Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000421.1

Orthogroup ID

OG0011559

Physical Location & Seq

Genomic Coordinates Forward (+)

145252 .. 147351

Gene Structure 2100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000421.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

atggaaggactagaaggtaacacaaacaactatgaagctggtttgagcattgaacaagctcgaacaaagtgtgatcaagatcatgaatatacactcccctcagctcacgctattggtcatgattcatggcagcaggttgggttgatgatggtgactggcttcaattgcgggtacatattgagcttttcaaatctgatgcttgtgcctttgggttggacatggggtatcatctgcctcgttgttgttggcttttataccgcctatgctaactggcttttggctgcttttcacttcatcaatggccaaagattcatcagatacagagatattatgggctatttatatggcagagaaatgtattacataacatgggttttacagttctcgaccctacttcttggaaatatgggtttcattcttctagggggtagagcactcaaggagattaactcagaactcagtgattctccactgaggctccaatactttattgtcatcaccggagtgacctatttcatattcgcctttttcattccaacaatgtctaaaatgagattttggcttggaccctctaccattgtcacttttgcttacattgtcatactcttggtggtactagttaaagatgggaaaacaaagacgacagagcgaaattatgaaatccatggaaacaaagctgagagagtgttcaatgccttcaatgcagtttcagctattattgtctgcaacacctcaggcttgctactagaaatacagtcaaccctgcagaagccagcagtaacaaatatgaggaaagctttatatctgcagtatagtgcagggctcttattttactatggagtcagcatagtaggatactgggcatatggcgcaaccgtatctgaataccttcctgaagagctaagtggtcctaaatcggttaaggtcctcataaacgctgccgtgtttctacaatccatagtctcacaacatatgtttgttgcaccaattcatgaggcccttgataccaagttccttaaacttgatgagatcatgcactggaaatataacttcaagcggaggttctacctccgagcccttctcttcatgggaaatacatttgtgacagcagctattcctttcatgggggactttgtgaacttatttggatcgtttacactcgttcctctaacttttgtttttccaagcatgattttcattaaggtgaagggaaagacagctagactggagaaaaatttgtggcattggttcaacattgttattttttctctgcttgcgattataactacgatttctgcagttcgtttgattgtcaacaatgttaaggaatacaatttctttgcagatacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

450

Amino Acids

51.33

Weight (kDa)

9.0

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06650 FvH4_5g06650 FvH4_5g06650 FvH4_5g06650
malus_domestica	MD06G1162100.v1.1
prunus_persica	Prupe.5G162500_v2.0.a1 Prupe.5G162500_v2.0.a1
pyrus_communis	pycom06g14490
rosa_chinensis	RchiOBHm_Chr7g0192031
rosa_laevigata	RLG00000004407
rosa_multiflora	Rmu_ssc0000421.1_g000036
rosa_roxburghii	Rroxscaffold_3G00263350
rosa_rugosa	Rorug06G0512500 Rorug06G0512600 Rorug06G0512600
rosa_samantha	Rh7AG122900 Rh7BG124500 Rh7CG127200 Rh7DG126000
rosa_wichuraiana	Rw7G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1283
Acc36I	ACCTGC	1 cut(s)	124
AciI	CCGC	3 cut(s)	168, 258, 1057
AclWI	GGATC	1 cut(s)	1156
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	1234
AcuI	CTGAAG	1 cut(s)	915
AfaI	GTAC	2 cut(s)	173, 615
AfiI	CCNNNNNNNGG	1 cut(s)	1124
AgsI	TTSAA	7 cut(s)	53, 163, 189, 691, 700, 1054, 1252
AhlI	ACTAGT	1 cut(s)	616
AleI	CACNNNNGTG	1 cut(s)	503
Alw21I	GWGCWC	1 cut(s)	436
Alw26I	GTCTC	1 cut(s)	967
AlwI	GGATC	1 cut(s)	1156
AoxI	GGCC	2 cut(s)	301, 996
ApeKI	GCWGC	4 cut(s)	130, 281, 938, 1109
ApoI	RAATTY	1 cut(s)	1234
Asp700I	GAANNNNTTC	1 cut(s)	888
AspLEI	GCGC	1 cut(s)	872
AspS9I	GGNCC	4 cut(s)	566, 908, 925, 997
AsuHPI	GGTGA	3 cut(s)	163, 490, 1216
AvaII	GGWCC	3 cut(s)	566, 908, 925
AxyI	CCTNAGG	1 cut(s)	733
BalI	TGGCCA	1 cut(s)	303
BanII	GRGCYC	2 cut(s)	825, 1078
Bbv12I	GWGCWC	1 cut(s)	436
BbvCI	CCTCAGC	1 cut(s)	100
BbvI	GCAGC	4 cut(s)	142, 268, 925, 1121
BccI	CCATC	2 cut(s)	142, 620
BceAI	ACGGC	1 cut(s)	926
BciVI	GTATCC	1 cut(s)	848
BclI	TGATCA	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	967
BcuI	ACTAGT	1 cut(s)	616
BfaI	CTAG	5 cut(s)	11, 422, 617, 746, 1221
BfmI	CTRYAG	3 cut(s)	764, 806, 1296
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	848
BisI	GCNGC	4 cut(s)	131, 282, 939, 1110
BlsI	GCNGC	4 cut(s)	132, 283, 940, 1111
Bme18I	GGWCC	3 cut(s)	566, 908, 925
BmgT120I	GGNCC	4 cut(s)	566, 908, 925, 997
BmiI	GGNNCC	2 cut(s)	479, 568
BmrI	ACTGGG	1 cut(s)	868
BmsI	GCATC	1 cut(s)	186
BmuI	ACTGGG	1 cut(s)	868
BplI	GAGNNNNNCTC	4 cut(s)	434, 466, 1065, 1097
BpmI	CTGGAG	1 cut(s)	1247
Bpu10I	CCTNAGC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	664
BsaWI	WCCGGW	1 cut(s)	500
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bsc4I	CCNNNNNNNGG	1 cut(s)	1124
Bse1I	ACTGG	5 cut(s)	160, 275, 863, 1043, 1230
Bse21I	CCTNAGG	1 cut(s)	733
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	664
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	1124
BseMII	CTCAG	6 cut(s)	114, 464, 465, 472, 669, 747
BseNI	ACTGG	5 cut(s)	160, 275, 863, 1043, 1230
BseXI	GCAGC	4 cut(s)	142, 268, 925, 1121
BsgI	GTGCAG	1 cut(s)	837
BshFI	GGCC	2 cut(s)	303, 998
BsiHKAI	GWGCWC	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	501
BslFI	GGGAC	1 cut(s)	1142
BslI	CCNNNNNNNGG	1 cut(s)	1124
BsmAI	GTCTC	1 cut(s)	967
BsmFI	GGGAC	1 cut(s)	1142
BsnI	GGCC	2 cut(s)	303, 998
Bsp1286I	GDGCHC	3 cut(s)	436, 825, 1078
Bsp143I	GATC	4 cut(s)	73, 79, 1029, 1148
Bsp19I	CCATGG	1 cut(s)	664
BspACI	CCGC	3 cut(s)	168, 258, 1057
BspANI	GGCC	2 cut(s)	303, 998
BspCNI	CTCAG	6 cut(s)	113, 464, 465, 471, 670, 746
BspHI	TCATGA	3 cut(s)	82, 118, 991
BspLI	GGNNCC	2 cut(s)	479, 568
BspMAI	CTGCAG	3 cut(s)	768, 810, 1300
BspMI	ACCTGC	1 cut(s)	124
BspPI	GGATC	1 cut(s)	1156
BspQI	GCTCTTC	1 cut(s)	891
BsrI	ACTGG	5 cut(s)	160, 275, 863, 1043, 1230
BssECI	CCNNGG	1 cut(s)	664
BssMI	GATC	4 cut(s)	73, 79, 1029, 1148
BssT1I	CCWWGG	1 cut(s)	664
Bst4CI	ACNGT	3 cut(s)	381, 756, 877
Bst6I	CTCTTC	2 cut(s)	891, 1088
BstC8I	GCNNGC	3 cut(s)	740, 774, 1275
BstDEI	CTNAG	7 cut(s)	100, 451, 458, 473, 678, 733, 902
BstDSI	CCRYGG	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	872
BstKTI	GATC	4 cut(s)	76, 82, 1032, 1151
BstMAI	GTCTC	1 cut(s)	967
BstMBI	GATC	4 cut(s)	73, 79, 1029, 1148
BstMWI	GCNNNNNNNGC	4 cut(s)	165, 701, 710, 869
BstSFI	CTRYAG	3 cut(s)	764, 806, 1296
BstV1I	GCAGC	4 cut(s)	142, 268, 925, 1121
Bsu36I	CCTNAGG	1 cut(s)	733
BsuI	GTATCC	1 cut(s)	848
BsuRI	GGCC	2 cut(s)	303, 998
BtgI	CCRYGG	1 cut(s)	664
BtsIMutI	CAGTG	3 cut(s)	466, 470, 1036
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	3 cut(s)	740, 774, 1275
CciI	TCATGA	3 cut(s)	82, 118, 991
CfoI	GCGC	1 cut(s)	872
Cfr13I	GGNCC	4 cut(s)	566, 908, 925, 997
Csp6I	GTAC	2 cut(s)	172, 614
CviQI	GTAC	2 cut(s)	172, 614
DdeI	CTNAG	7 cut(s)	100, 451, 458, 473, 678, 733, 902
DpnI	GATC	4 cut(s)	75, 81, 1031, 1150
DpnII	GATC	4 cut(s)	73, 79, 1029, 1148
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	2 cut(s)	891, 1088
EarI	CTCTTC	2 cut(s)	891, 1088
Eco130I	CCWWGG	1 cut(s)	664
Eco24I	GRGCYC	2 cut(s)	825, 1078
Eco47I	GGWCC	3 cut(s)	566, 908, 925
Eco57I	CTGAAG	1 cut(s)	915
Eco81I	CCTNAGG	1 cut(s)	733
EcoO109I	RGGNCCY	2 cut(s)	925, 997
EcoT14I	CCWWGG	1 cut(s)	664
EcoT38I	GRGCYC	2 cut(s)	825, 1078
ErhI	CCWWGG	1 cut(s)	664
FaqI	GGGAC	1 cut(s)	1142
FauI	CCCGC	1 cut(s)	161
FauNDI	CATATG	2 cut(s)	865, 972
FbaI	TGATCA	1 cut(s)	73
Fnu4HI	GCNGC	4 cut(s)	131, 282, 939, 1110
FriOI	GRGCYC	2 cut(s)	825, 1078
Fsp4HI	GCNGC	4 cut(s)	131, 282, 939, 1110
FspBI	CTAG	5 cut(s)	11, 422, 617, 746, 1221
GlaI	GCGC	1 cut(s)	871
GluI	GCNGC	4 cut(s)	131, 282, 939, 1110
GsuI	CTGGAG	1 cut(s)	1247
HaeIII	GGCC	2 cut(s)	303, 998
HapII	CCGG	1 cut(s)	501
HhaI	GCGC	1 cut(s)	872
Hin6I	GCGC	1 cut(s)	870
HinP1I	GCGC	1 cut(s)	870
HincII	GTYRAC	2 cut(s)	759, 1315
HindII	GTYRAC	2 cut(s)	759, 1315
HindIII	AAGCTT	1 cut(s)	795
HinfI	GANTC	4 cut(s)	122, 309, 464, 840
HpaII	CCGG	1 cut(s)	501
HphI	GGTGA	3 cut(s)	163, 490, 1216
Hpy166II	GTNNAC	4 cut(s)	759, 1138, 1155, 1315
Hpy188I	TCNGA	5 cut(s)	195, 317, 454, 883, 1073
Hpy188III	TCNNGA	6 cut(s)	77, 83, 119, 385, 893, 992
Hpy8I	GTNNAC	4 cut(s)	759, 1138, 1155, 1315
HpyAV	CCTTC	5 cut(s)	8, 706, 899, 1088, 1201
HpyCH4III	ACNGT	3 cut(s)	381, 756, 877
HpyCH4V	TGCA	9 cut(s)	704, 726, 766, 808, 818, 983, 1036, 1298, 1343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	165, 701, 710, 869
HpyF3I	CTNAG	7 cut(s)	100, 451, 458, 473, 678, 733, 902
HspAI	GCGC	1 cut(s)	870
Ksp22I	TGATCA	1 cut(s)	73
Kzo9I	GATC	4 cut(s)	73, 79, 1029, 1148
LguI	GCTCTTC	1 cut(s)	891
LmnI	GCTCC	1 cut(s)	483
Lsp1109I	GCAGC	4 cut(s)	142, 268, 925, 1121
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	5 cut(s)	11, 422, 617, 746, 1221
MaeIII	GTNAC	6 cut(s)	17, 151, 505, 580, 778, 1102
MalI	GATC	4 cut(s)	75, 81, 1031, 1150
MboI	GATC	4 cut(s)	73, 79, 1029, 1148
MboII	GAAGA	3 cut(s)	410, 908, 1075
MfeI	CAATTG	1 cut(s)	163
MhlI	GDGCHC	3 cut(s)	436, 825, 1078
MlsI	TGGCCA	1 cut(s)	303
MluCI	AATT	5 cut(s)	163, 652, 987, 1234, 1333
MluNI	TGGCCA	1 cut(s)	303
MlyI	GAGTC	1 cut(s)	849
MmeI	TCCRAC	2 cut(s)	194, 560
Mox20I	TGGCCA	1 cut(s)	303
MroXI	GAANNNNTTC	1 cut(s)	888
MscI	TGGCCA	1 cut(s)	303
MseI	TTAA	6 cut(s)	447, 621, 921, 1017, 1200, 1323
MslI	CAYNNNNRTG	2 cut(s)	503, 1202
Msp20I	TGGCCA	1 cut(s)	303
MspI	CCGG	1 cut(s)	501
MunI	CAATTG	1 cut(s)	163
MwoI	GCNNNNNNNGC	4 cut(s)	165, 701, 710, 869
NcoI	CCATGG	1 cut(s)	664
NdeI	CATATG	2 cut(s)	865, 972
NdeII	GATC	4 cut(s)	73, 79, 1029, 1148
NlaIV	GGNNCC	2 cut(s)	479, 568
NmuCI	GTSAC	4 cut(s)	151, 505, 580, 1102
OliI	CACNNNNGTG	1 cut(s)	503
PagI	TCATGA	3 cut(s)	82, 118, 991
PciSI	GCTCTTC	1 cut(s)	891
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	3 cut(s)	122, 309, 464
PkrI	GCNGC	4 cut(s)	132, 283, 940, 1111
PleI	GAGTC	1 cut(s)	848
PpsI	GAGTC	1 cut(s)	848
PpuMI	RGGWCCY	1 cut(s)	925
PsiI	TTATAA	1 cut(s)	1283
Psp5II	RGGWCCY	1 cut(s)	925
PspN4I	GGNNCC	2 cut(s)	479, 568
PspPI	GGNCC	4 cut(s)	566, 908, 925, 997
PspPPI	RGGWCCY	1 cut(s)	925
PstI	CTGCAG	3 cut(s)	768, 810, 1300
RsaI	GTAC	2 cut(s)	173, 615
RsaNI	GTAC	2 cut(s)	172, 614
RseI	CAYNNNNRTG	2 cut(s)	503, 1202
SapI	GCTCTTC	1 cut(s)	891
SaqAI	TTAA	6 cut(s)	447, 621, 921, 1017, 1200, 1323
SatI	GCNGC	4 cut(s)	131, 282, 939, 1110
Sau3AI	GATC	4 cut(s)	73, 79, 1029, 1148
Sau96I	GGNCC	4 cut(s)	566, 908, 925, 997
SchI	GAGTC	1 cut(s)	849
SduI	GDGCHC	3 cut(s)	436, 825, 1078
SfaNI	GCATC	1 cut(s)	186
SfcI	CTRYAG	3 cut(s)	764, 806, 1296
SinI	GGWCC	3 cut(s)	566, 908, 925
SmiMI	CAYNNNNRTG	2 cut(s)	503, 1202
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
SpeI	ACTAGT	1 cut(s)	616
Sse9I	AATT	5 cut(s)	163, 652, 987, 1234, 1333
SsiI	CCGC	3 cut(s)	168, 258, 1057
SspMI	CTAG	5 cut(s)	11, 422, 617, 746, 1221
StyI	CCWWGG	1 cut(s)	664
TaaI	ACNGT	3 cut(s)	381, 756, 877
TaqI	TCGA	2 cut(s)	61, 386
TasI	AATT	5 cut(s)	163, 652, 987, 1234, 1333
TfiI	GAWTC	3 cut(s)	122, 309, 464
Tru1I	TTAA	6 cut(s)	447, 621, 921, 1017, 1200, 1323
Tru9I	TTAA	6 cut(s)	447, 621, 921, 1017, 1200, 1323
TscAI	CASTG	3 cut(s)	466, 477, 1043
TseFI	GTSAC	4 cut(s)	151, 505, 580, 1102
TseI	GCWGC	4 cut(s)	130, 281, 938, 1109
Tsp45I	GTSAC	4 cut(s)	151, 505, 580, 1102
TspRI	CASTG	3 cut(s)	466, 477, 1043
VpaK11BI	GGWCC	3 cut(s)	566, 908, 925
XapI	RAATTY	1 cut(s)	1234
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	5 cut(s)	11, 422, 617, 746, 1221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.