Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0011559

Physical Location & Seq

Genomic Coordinates Forward (+)

19214021 .. 19215905

Gene Structure 1885 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g14490.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGTGGGGGTTCATATGCCTTCTGGTTTTTGGGCTCTACAGTGCCTATGCAATCCGGCTTTTGGCTGCTTTTCACTTCATCGATGGCCAAAGGTTCATCAGATACAGAGATCTCATGGGTTTTTTATTTGGCAGAGAGATGTTTTACACCACTTGGGTTTTCCAATTTTTGACCCTTCTACTTGGAAACATGGGTTTCATTCTACTTGGGGGAAGAGCGCTCAAGGAAATTAACTCCGAATTCAGCGACTCACCATTTCGGCTTCAGTATTTTATCGCCATCACCGGAGTGACCTACTTTGTATTTGCATTCTTCATTCCAACATTGTCTGCAATGAGAAGTTGGCTCGGACCATCTACCGTTATCACCTTCGCTTACATTGTCATACTCTTGGTGGTAGTGGTTAAAGATGGGAAAGCTAACACCAAGAGAGATTATGCGATCCATGGAAACGAAGCAGACAGAGTACTCAATGCCTTTGGTGCAATTGCTGCTATTATCGTGTGCAACTCCTCCGGATTGCTACTCGAAATACAGTCAACACTAAGAGCTCCTGCAGTAACAAATATGAGGAAAGCTTTATATCTGCAGTTTACTGTGGGACTGGTATTTTACTATGGAGTGAGCATAGTAGGATACTGGGCTTATGGCTCAACTGTATCCGAATACCTTCCTCAAGAGCTAAGCGGTCCTAAATCGGTTAAGGTTCTCATAAATGCCGCTGTTTTTCTACAATCCATAGTCTCCCAACATATGTTCGTGGCACCAATCCACGAGTTCCTCGATACCAAGTTCCTCAAACTCGATAAGAGCATGAACTCAAAAGGAAATTTGAAGCGCAGATTGTATGTTCGAGCCCTCCTCTTTGCAGTAAATACATTTGTAACAGCAGCTTTTCCTTTCATGGGGGACTTTGTAAACTTGTTTGGATCCTTTACACTCGTTCCTCTAACTTTCGTGTTCCCGAGCATGATTTTCATCAAGGTGAAGGGAAAGGCAGCTTCACTGGAGAAGATTTTATGGCATTGGTTCAACATCGTTATTTTTTCGCTCCTTGCCGTCGTCACCACAATTTCTGCCGTTCGATTGATAGTCAACAATGTTAAGGAATATAGTTTCTTTGCAAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

378

Amino Acids

42.55

Weight (kDa)

9.71

Isoelectric Point (pI)

27.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011559)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g06650 FvH4_5g06650 FvH4_5g06650 FvH4_5g06650
malus_domestica	MD06G1162100.v1.1
prunus_persica	Prupe.5G162500_v2.0.a1 Prupe.5G162500_v2.0.a1
pyrus_communis	pycom06g14490
rosa_chinensis	RchiOBHm_Chr7g0192031
rosa_laevigata	RLG00000004407
rosa_multiflora	Rmu_ssc0000421.1_g000036
rosa_roxburghii	Rroxscaffold_3G00263350
rosa_rugosa	Rorug06G0512500 Rorug06G0512600 Rorug06G0512600
rosa_samantha	Rh7AG122900 Rh7BG124500 Rh7CG127200 Rh7DG126000
rosa_wichuraiana	Rw7G010460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	763
AccIII	TCCGGA	1 cut(s)	515
AciI	CCGC	2 cut(s)	687, 720
AclWI	GGATC	3 cut(s)	436, 924, 937
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	239, 829
AcuI	CTGAAG	1 cut(s)	248
AfaI	GTAC	1 cut(s)	468
AfeI	AGCGCT	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	61, 905
AgsI	TTSAA	2 cut(s)	835, 1033
AleI	CACNNNNGTG	1 cut(s)	287
AluBI	AGCT	6 cut(s)	419, 551, 578, 682, 893, 1001
AluI	AGCT	6 cut(s)	419, 551, 578, 682, 893, 1001
Alw21I	GWGCWC	1 cut(s)	553
Alw26I	GTCTC	1 cut(s)	748
AlwI	GGATC	3 cut(s)	436, 924, 937
Ama87I	CYCGRG	1 cut(s)	964
Aor13HI	TCCGGA	1 cut(s)	515
Aor51HI	AGCGCT	1 cut(s)	219
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	4 cut(s)	65, 491, 890, 998
ApoI	RAATTY	2 cut(s)	239, 829
Asp700I	GAANNNNTTC	1 cut(s)	669
AspLEI	GCGC	2 cut(s)	220, 840
AspS9I	GGNCC	2 cut(s)	350, 689
AsuHPI	GGTGA	5 cut(s)	243, 274, 358, 997, 1057
AvaI	CYCGRG	1 cut(s)	964
AvaII	GGWCC	2 cut(s)	350, 689
BalI	TGGCCA	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	929
BanI	GGYRCC	1 cut(s)	763
BanII	GRGCYC	3 cut(s)	36, 553, 859
BauI	CACGAG	1 cut(s)	773
Bbv12I	GWGCWC	1 cut(s)	553
BbvI	GCAGC	4 cut(s)	52, 478, 902, 1010
BccI	CCATC	4 cut(s)	77, 287, 361, 404
BceAI	ACGGC	2 cut(s)	1043, 1064
BciVI	GTATCC	2 cut(s)	629, 670
BcoDI	GTCTC	1 cut(s)	748
BfmI	CTRYAG	3 cut(s)	37, 555, 587
BfoI	RGCGCY	1 cut(s)	221
BfuI	GTATCC	2 cut(s)	629, 670
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	5 cut(s)	66, 492, 720, 891, 999
BlpI	GCTNAGC	1 cut(s)	683
BlsI	GCNGC	5 cut(s)	67, 493, 721, 892, 1000
BmcAI	AGTACT	1 cut(s)	468
Bme18I	GGWCC	2 cut(s)	350, 689
BmeT110I	CYCGRG	1 cut(s)	964
BmgT120I	GGNCC	2 cut(s)	350, 689
BmiI	GGNNCC	2 cut(s)	765, 931
BmrI	ACTGGG	1 cut(s)	649
BmuI	ACTGGG	1 cut(s)	649
BplI	GAGNNNNNCTC	2 cut(s)	846, 878
BpmI	CTGGAG	1 cut(s)	1028
Bpu1102I	GCTNAGC	1 cut(s)	683
BpuEI	CTTGAG	2 cut(s)	206, 660
Bsa29I	ATCGAT	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	977
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	2 cut(s)	284, 515
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 905
Bse1I	ACTGG	3 cut(s)	609, 644, 1011
Bse3DI	GCAATG	1 cut(s)	339
Bse8I	GATNNNNATC	1 cut(s)	977
BseAI	TCCGGA	1 cut(s)	515
BseCI	ATCGAT	1 cut(s)	81
BseDI	CCNNGG	1 cut(s)	445
BseJI	GATNNNNATC	1 cut(s)	977
BseLI	CCNNNNNNNGG	2 cut(s)	61, 905
BseMI	GCAATG	1 cut(s)	339
BseNI	ACTGG	3 cut(s)	609, 644, 1011
BseRI	GAGGAG	2 cut(s)	502, 851
BseXI	GCAGC	4 cut(s)	52, 478, 902, 1010
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	763
BshVI	ATCGAT	1 cut(s)	81
BsiHKAI	GWGCWC	1 cut(s)	553
BsiHKCI	CYCGRG	1 cut(s)	964
BsiSI	CCGG	3 cut(s)	55, 285, 516
BslFI	GGGAC	2 cut(s)	615, 923
BslI	CCNNNNNNNGG	2 cut(s)	61, 905
BsmAI	GTCTC	1 cut(s)	748
BsmFI	GGGAC	2 cut(s)	615, 923
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	964
Bsp1286I	GDGCHC	3 cut(s)	36, 553, 859
Bsp13I	TCCGGA	1 cut(s)	515
Bsp143I	GATC	3 cut(s)	109, 441, 929
Bsp1720I	GCTNAGC	1 cut(s)	683
Bsp19I	CCATGG	1 cut(s)	445
BspACI	CCGC	2 cut(s)	687, 720
BspANI	GGCC	1 cut(s)	87
BspDI	ATCGAT	1 cut(s)	81
BspEI	TCCGGA	1 cut(s)	515
BspLI	GGNNCC	2 cut(s)	765, 931
BspMAI	CTGCAG	2 cut(s)	559, 591
BspPI	GGATC	3 cut(s)	436, 924, 937
BspQI	GCTCTTC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	3 cut(s)	609, 644, 1011
BssECI	CCNNGG	1 cut(s)	445
BssMI	GATC	3 cut(s)	109, 441, 929
BssSI	CACGAG	1 cut(s)	773
BssT1I	CCWWGG	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	773
Bst4CI	ACNGT	5 cut(s)	41, 361, 537, 598, 658
Bst6I	CTCTTC	1 cut(s)	208
BstAPI	GCANNNNNTGC	1 cut(s)	491
BstDEI	CTNAG	2 cut(s)	545, 683
BstDSI	CCRYGG	1 cut(s)	445
BstH2I	RGCGCY	1 cut(s)	221
BstHHI	GCGC	2 cut(s)	220, 840
BstKTI	GATC	3 cut(s)	112, 444, 932
BstMAI	GTCTC	1 cut(s)	748
BstMBI	GATC	3 cut(s)	109, 441, 929
BstMWI	GCNNNNNNNGC	2 cut(s)	482, 491
BstSFI	CTRYAG	3 cut(s)	37, 555, 587
BstV1I	GCAGC	4 cut(s)	52, 478, 902, 1010
BstX2I	RGATCY	2 cut(s)	109, 929
BstYI	RGATCY	2 cut(s)	109, 929
Bsu15I	ATCGAT	1 cut(s)	81
BsuI	GTATCC	2 cut(s)	629, 670
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	445
BtsIMutI	CAGTG	2 cut(s)	46, 1004
CfoI	GCGC	2 cut(s)	220, 840
Cfr13I	GGNCC	2 cut(s)	350, 689
ClaI	ATCGAT	1 cut(s)	81
Csp6I	GTAC	1 cut(s)	467
CviAII	CATG	7 cut(s)	115, 190, 446, 814, 904, 970, 1131
CviQI	GTAC	1 cut(s)	467
DdeI	CTNAG	2 cut(s)	545, 683
DpnI	GATC	3 cut(s)	111, 443, 931
DpnII	GATC	3 cut(s)	109, 441, 929
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	1 cut(s)	208
EarI	CTCTTC	1 cut(s)	208
Ecl136II	GAGCTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	445
Eco24I	GRGCYC	3 cut(s)	36, 553, 859
Eco47I	GGWCC	2 cut(s)	350, 689
Eco47III	AGCGCT	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	964
EcoICRI	GAGCTC	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	239
EcoT14I	CCWWGG	1 cut(s)	445
EcoT38I	GRGCYC	3 cut(s)	36, 553, 859
ErhI	CCWWGG	1 cut(s)	445
FaeI	CATG	7 cut(s)	118, 193, 449, 817, 907, 973, 1134
FaqI	GGGAC	2 cut(s)	615, 923
FatI	CATG	7 cut(s)	114, 189, 445, 813, 903, 969, 1130
FauNDI	CATATG	2 cut(s)	14, 753
Fnu4HI	GCNGC	5 cut(s)	66, 492, 720, 891, 999
FriOI	GRGCYC	3 cut(s)	36, 553, 859
Fsp4HI	GCNGC	5 cut(s)	66, 492, 720, 891, 999
GlaI	GCGC	2 cut(s)	219, 839
GluI	GCNGC	5 cut(s)	66, 492, 720, 891, 999
GsuI	CTGGAG	1 cut(s)	1028
HaeII	RGCGCY	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	3 cut(s)	55, 285, 516
HhaI	GCGC	2 cut(s)	220, 840
Hin1II	CATG	7 cut(s)	118, 193, 449, 817, 907, 973, 1134
Hin6I	GCGC	2 cut(s)	218, 838
HinP1I	GCGC	2 cut(s)	218, 838
HincII	GTYRAC	2 cut(s)	540, 1096
HindII	GTYRAC	2 cut(s)	540, 1096
HindIII	AAGCTT	1 cut(s)	576
HinfI	GANTC	1 cut(s)	248
HpaII	CCGG	3 cut(s)	55, 285, 516
HphI	GGTGA	5 cut(s)	243, 274, 358, 997, 1057
Hpy166II	GTNNAC	4 cut(s)	540, 594, 919, 1096
Hpy188I	TCNGA	4 cut(s)	101, 238, 350, 664
Hpy188III	TCNNGA	3 cut(s)	516, 677, 964
Hpy8I	GTNNAC	4 cut(s)	540, 594, 919, 1096
Hpy99I	CGWCG	1 cut(s)	1064
HpyAV	CCTTC	5 cut(s)	29, 185, 379, 680, 982
HpyCH4III	ACNGT	5 cut(s)	41, 361, 537, 598, 658
HpyCH4V	TGCA	9 cut(s)	50, 308, 332, 485, 507, 557, 589, 869, 1124
HpyF10VI	GCNNNNNNNGC	2 cut(s)	482, 491
HpyF3I	CTNAG	2 cut(s)	545, 683
Hsp92II	CATG	7 cut(s)	118, 193, 449, 817, 907, 973, 1134
HspAI	GCGC	2 cut(s)	218, 838
Kpn2I	TCCGGA	1 cut(s)	515
Kzo9I	GATC	3 cut(s)	109, 441, 929
LguI	GCTCTTC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	556, 1056
LpnPI	CCDG	8 cut(s)	8, 68, 298, 529, 567, 590, 625, 992
Lsp1109I	GCAGC	4 cut(s)	52, 478, 902, 1010
MaeIII	GTNAC	4 cut(s)	289, 559, 883, 1063
MalI	GATC	3 cut(s)	111, 443, 931
MboI	GATC	3 cut(s)	109, 441, 929
MboII	GAAGA	3 cut(s)	225, 304, 1024
MfeI	CAATTG	1 cut(s)	486
MflI	RGATCY	2 cut(s)	109, 929
MhlI	GDGCHC	3 cut(s)	36, 553, 859
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	6 cut(s)	164, 228, 239, 486, 829, 1071
MluNI	TGGCCA	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	8 cut(s)	523, 564, 684, 791, 806, 869, 872, 957
Mox20I	TGGCCA	1 cut(s)	87
MroI	TCCGGA	1 cut(s)	515
MroXI	GAANNNNTTC	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	87
MseI	TTAA	4 cut(s)	231, 405, 702, 1104
MslI	CAYNNNNRTG	2 cut(s)	287, 983
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	3 cut(s)	55, 285, 516
MunI	CAATTG	1 cut(s)	486
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	482, 491
NcoI	CCATGG	1 cut(s)	445
NdeI	CATATG	2 cut(s)	14, 753
NdeII	GATC	3 cut(s)	109, 441, 929
NlaIII	CATG	7 cut(s)	118, 193, 449, 817, 907, 973, 1134
NlaIV	GGNNCC	2 cut(s)	765, 931
NmuCI	GTSAC	2 cut(s)	289, 1063
OliI	CACNNNNGTG	1 cut(s)	287
PciSI	GCTCTTC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	1 cut(s)	780
PctI	GAATGC	1 cut(s)	308
PdmI	GAANNNNTTC	1 cut(s)	669
PkrI	GCNGC	5 cut(s)	67, 493, 721, 892, 1000
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
Psp124BI	GAGCTC	1 cut(s)	553
PspN4I	GGNNCC	2 cut(s)	765, 931
PspPI	GGNCC	2 cut(s)	350, 689
PstI	CTGCAG	2 cut(s)	559, 591
PsuI	RGATCY	2 cut(s)	109, 929
RsaI	GTAC	1 cut(s)	468
RsaNI	GTAC	1 cut(s)	467
RseI	CAYNNNNRTG	2 cut(s)	287, 983
SacI	GAGCTC	1 cut(s)	553
SapI	GCTCTTC	1 cut(s)	208
SaqAI	TTAA	4 cut(s)	231, 405, 702, 1104
SatI	GCNGC	5 cut(s)	66, 492, 720, 891, 999
Sau3AI	GATC	3 cut(s)	109, 441, 929
Sau96I	GGNCC	2 cut(s)	350, 689
ScaI	AGTACT	1 cut(s)	468
SchI	GAGTC	1 cut(s)	242
SduI	GDGCHC	3 cut(s)	36, 553, 859
SfcI	CTRYAG	3 cut(s)	37, 555, 587
SinI	GGWCC	2 cut(s)	350, 689
SmiMI	CAYNNNNRTG	2 cut(s)	287, 983
SmlI	CTYRAG	2 cut(s)	221, 675
SmoI	CTYRAG	2 cut(s)	221, 675
Sse9I	AATT	6 cut(s)	164, 228, 239, 486, 829, 1071
SsiI	CCGC	2 cut(s)	687, 720
SstI	GAGCTC	1 cut(s)	553
StyI	CCWWGG	1 cut(s)	445
TaaI	ACNGT	5 cut(s)	41, 361, 537, 598, 658
TaqI	TCGA	6 cut(s)	81, 528, 783, 804, 853, 1084
TasI	AATT	6 cut(s)	164, 228, 239, 486, 829, 1071
TatI	WGTACW	1 cut(s)	466
TauI	GCSGC	1 cut(s)	722
Tru1I	TTAA	4 cut(s)	231, 405, 702, 1104
Tru9I	TTAA	4 cut(s)	231, 405, 702, 1104
TscAI	CASTG	2 cut(s)	46, 1011
TseFI	GTSAC	2 cut(s)	289, 1063
TseI	GCWGC	4 cut(s)	65, 491, 890, 998
Tsp45I	GTSAC	2 cut(s)	289, 1063
TspDTI	ATGAA	7 cut(s)	67, 85, 187, 304, 830, 892, 967
TspRI	CASTG	2 cut(s)	46, 1011
VpaK11BI	GGWCC	2 cut(s)	350, 689
XapI	RAATTY	2 cut(s)	239, 829
XmnI	GAANNNNTTC	1 cut(s)	669
ZrmI	AGTACT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.