Prupe.5G204600_v2.0.a1

dnaJ homolog subfamily C member

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
Physical Location & Seq
Reverse (-)
16396850 .. 16400686
3837 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G204600.2

Sequence Viewer

Length: 1818 bp
ATGTCATCGTCGGAGAGGCGGTGCCACTATGAGGTCTTAGGTCTCTCACGCGATTGCTCACCCGACGAGATCCGCTCGGCTTACAAGAAGCTCGCTCTGCAGCGCCACCCGGACAAGCTCGTCCAATCCGGCTTGTCCCAGGCCCAAGCCACGGCTCAGTTCCAGGAGCTGAGCCAGGCCTACGAGGTTCTCTCCGACCCTAAAGAGCGAGCTTGGTACGACTCTCACCGCTCCCAAATCCTCTTCGCCGATCCCAACTCGGCCAACTCGGTCCCCGACTCGGTCATCCCCAACCTCTTCTCCTTCTTCTCCACCACCGTGTTCTCCGGCTACTCCGACTCCGGTCGCGGATTCTACAAGGTCTACGCCGATGTTTTCAATAAAATTTACGCCAACGAGCTCAGCTACGTTCGTAAATTAGGGTTAGGGTTAGACACGGTGCGTGAAGCTCCGGCTATGGGGAATTTGGAAAGTCCCTACGCGCAGGTGACGGCGTTTTATAACTACTGGTTGGGCTTTTGTACGGTGATGGACTTTTTCTGGGTGGACCAGTATGATGTGATGAGCGGCCCGAACCGGAAGGTGAGGAGGCTGATGGAGGAGGATAACAAGAAGCTGAGGAAGAAGGCGAAGAGAGAGTACAACGACACGGTGCGGGGTTTGGCAGAATTTGTGAAGAAGAGGGACAAGAGGGTGATGGATATGATGGTGAAGAGAGAGGAGGAGAGGGAGAGGAAGAGGGAAGAAGAGAGAGAAAAGAAGAAGAAGTTGGAGAAGGAGAAATTGGAGAGAGCTATGGCGTATGAGGAGCCAGAGTGGGCGAAAGTGGTTGAGGAAGAGGAAGGAGGAAATGGGGTTGAGGAAATGGAGCAAGAGGAGGAGGAGAGGAGGAAGGAATTGTATTGTGTGGTATGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAATCACGAGCAGTCGAAGAAGCACCGCGATAAGGTTGCAGAGTTTAGGGAGTCAATTGGGGATGAAGAGTTTGATGCTCAAGAGATTTTGGAAGGAGAGGCTGAAGAAAGGGGTGAGGTGGATGATATTGATGGGGTTGATACTGATGAATTAGGTGAGGGGATTAGGGAAGGGTTGAAGATTGGGGAGGAGGAAAATGGGGTAGGAGTGAGTGATAGGGAGGATAAGTTTTATGAAGTTGGTGATGAAAATGAGAGGGAAAAGGTTGATGAGGCAGTTGGATTGGATGGAGATGATGGTGAAGATGAGATGGGTGTTCTGGAAGCAATGTTGGCTGGCCGAAACAGTAGGAAAAATGCAGCTTTGAGGGTTGAGCAAGAGGATTCCTTCGTGACTGATATTCATGTGGAGAATGATGACGATGAGGTAGAGTTTATGGAATATGATAACCGGAAGAGTACAAGAAGGAAAGGAGGAGCGAGGAAAGATAGGAGTAAGAAGAGTAGTGGAGAATCTAAAAAGGTTGGTAGAAGTGAAATTAATAGTGATCGGGGTGAGGAGCTTAATGAACATGATAATTCACATATAGAAGAATCCGCATCTCATTCTTTTGTAAAAAAAGAGAGTAATGATAAAGGGGACGATCAGTTAGCAAGAAAGAAAAAGAGCTCAAGCCAACCTGTTGATAAGAAAGAGAATGTGAAGAAAGAGGCAAACAGCAAATCAAAGAACTCATCTAAAGGGAAGAAGGCTAAGGCAGCATCAAAGAATTCTAGCAATCTGTGTGACACATGCGGAGAGGAATTCGACTCAAGAAACCAGTTACATAAGCATTTGGGTGATACTGGACATGCTAAGCTGAAGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

606

Amino Acids

69.49

Weight (kDa)

5.27

Isoelectric Point (pI)

48.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 501
AarI CACCTGC 1 cut(s) 475
AasI GACNNNNNNGTC 1 cut(s) 119
Acc36I ACCTGC 1 cut(s) 475
AccB1I GGYRCC 1 cut(s) 21
AccBSI CCGCTC 3 cut(s) 75, 231, 567
AccI GTMKAC 1 cut(s) 363
AccII CGCG 4 cut(s) 51, 348, 482, 975
AciI CCGC 9 cut(s) 19, 73, 229, 348, 567, 655, 973, 1545, 1743
AclWI GGATC 2 cut(s) 64, 245
AcoI YGGCCR 2 cut(s) 261, 1285
AcsI RAATTY 5 cut(s) 384, 463, 668, 1717, 1751
AcuI CTGAAG 1 cut(s) 1071
AfaI GTAC 4 cut(s) 218, 523, 641, 1408
AfiI CCNNNNNNNGG 5 cut(s) 31, 151, 280, 458, 979
AgsI TTSAA 2 cut(s) 379, 1126
AjnI CCWGG 3 cut(s) 138, 162, 174
AjuI GAANNNNNNNTTGG 4 cut(s) 752, 767, 784, 799
AleI CACNNNNGTG 1 cut(s) 317
Alw21I GWGCWC 2 cut(s) 402, 1619
Alw26I GTCTC 1 cut(s) 47
AlwI GGATC 2 cut(s) 64, 245
AlwNI CAGNNNCTG 1 cut(s) 169
AoxI GGCC 5 cut(s) 141, 177, 261, 568, 1285
ApeKI GCWGC 3 cut(s) 100, 1307, 1706
ApoI RAATTY 5 cut(s) 384, 463, 668, 1717, 1751
AseI ATTAAT 1 cut(s) 1488
AspLEI GCGC 2 cut(s) 105, 484
AspS9I GGNCC 4 cut(s) 142, 271, 547, 569
AsuC2I CCSGG 1 cut(s) 110
AvaII GGWCC 2 cut(s) 271, 547
BanI GGYRCC 1 cut(s) 21
BanII GRGCYC 2 cut(s) 402, 1619
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BauI CACGAG 1 cut(s) 953
Bbv12I GWGCWC 2 cut(s) 402, 1619
BbvCI CCTCAGC 1 cut(s) 617
BbvI GCAGC 3 cut(s) 112, 1319, 1718
BccI CCATC 8 cut(s) 523, 589, 691, 700, 1073, 1229, 1238, 1252
BceAI ACGGC 2 cut(s) 168, 507
BcgI CGANNNNNNTGC 2 cut(s) 965, 999
BciT130I CCWGG 3 cut(s) 140, 164, 176
BcnI CCSGG 1 cut(s) 110
BcoDI GTCTC 1 cut(s) 47
BfaI CTAG 1 cut(s) 1722
BfmI CTRYAG 1 cut(s) 98
BfoI RGCGCY 1 cut(s) 106
BfuAI ACCTGC 1 cut(s) 475
BisI GCNGC 4 cut(s) 101, 568, 1308, 1707
BlpI GCTNAGC 3 cut(s) 170, 401, 1803
BlsI GCNGC 4 cut(s) 102, 569, 1309, 1708
Bme1390I CCNGG 4 cut(s) 110, 140, 164, 176
Bme18I GGWCC 2 cut(s) 271, 547
BmgT120I GGNCC 4 cut(s) 142, 271, 547, 569
BmiI GGNNCC 3 cut(s) 23, 273, 810
BmrFI CCNGG 4 cut(s) 110, 140, 164, 176
BmsI GCATC 3 cut(s) 1012, 1556, 1718
BoxI GACNNNNGTC 1 cut(s) 342
BplI GAGNNNNNCTC 4 cut(s) 59, 91, 176, 208
Bpu10I CCTNAGC 2 cut(s) 617, 1701
Bpu1102I GCTNAGC 3 cut(s) 170, 401, 1803
BpuEI CTTGAG 3 cut(s) 1011, 1603, 1744
BpuMI CCSGG 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 138, 150
BsaWI WCCGGW 3 cut(s) 341, 576, 1398
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 151, 280, 458, 979
Bse1I ACTGG 4 cut(s) 512, 550, 1768, 1798
Bse3DI GCAATG 1 cut(s) 1281
BseBI CCWGG 3 cut(s) 140, 164, 176
BseDI CCNNGG 2 cut(s) 138, 150
BseGI GGATG 4 cut(s) 285, 1015, 1075, 1240
BseLI CCNNNNNNNGG 5 cut(s) 31, 151, 280, 458, 979
BseMI GCAATG 1 cut(s) 1281
BseMII CTCAG 4 cut(s) 161, 170, 415, 608
BseNI ACTGG 4 cut(s) 512, 550, 1768, 1798
BseXI GCAGC 3 cut(s) 112, 1319, 1718
Bsh1236I CGCG 4 cut(s) 51, 348, 482, 975
Bsh1285I CGRYCG 1 cut(s) 346
BshFI GGCC 5 cut(s) 143, 179, 263, 570, 1287
BshNI GGYRCC 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 346
BsiHKAI GWGCWC 2 cut(s) 402, 1619
BsiSI CCGG 7 cut(s) 110, 129, 327, 342, 452, 577, 1399
BslFI GGGAC 5 cut(s) 121, 257, 459, 698, 1601
BslI CCNNNNNNNGG 5 cut(s) 31, 151, 280, 458, 979
BsmAI GTCTC 1 cut(s) 47
BsmFI GGGAC 5 cut(s) 121, 257, 459, 698, 1601
BsnI GGCC 5 cut(s) 143, 179, 263, 570, 1287
Bso31I GGTCTC 1 cut(s) 47
Bsp1286I GDGCHC 2 cut(s) 402, 1619
Bsp143I GATC 4 cut(s) 69, 250, 1495, 1591
Bsp1720I GCTNAGC 3 cut(s) 170, 401, 1803
BspACI CCGC 9 cut(s) 19, 73, 229, 348, 567, 655, 973, 1545, 1743
BspANI GGCC 5 cut(s) 143, 179, 263, 570, 1287
BspCNI CTCAG 4 cut(s) 162, 169, 414, 609
BspFNI CGCG 4 cut(s) 51, 348, 482, 975
BspLI GGNNCC 3 cut(s) 23, 273, 810
BspMAI CTGCAG 1 cut(s) 102
BspMI ACCTGC 1 cut(s) 475
BspPI GGATC 2 cut(s) 64, 245
BspT107I GGYRCC 1 cut(s) 21
BspTNI GGTCTC 1 cut(s) 47
BsrBI CCGCTC 3 cut(s) 75, 231, 567
BsrDI GCAATG 1 cut(s) 1281
BsrI ACTGG 4 cut(s) 512, 550, 1768, 1798
BssECI CCNNGG 2 cut(s) 138, 150
BssMI GATC 4 cut(s) 69, 250, 1495, 1591
BssSI CACGAG 1 cut(s) 953
Bst2BI CACGAG 1 cut(s) 953
Bst2UI CCWGG 3 cut(s) 140, 164, 176
Bst4CI ACNGT 5 cut(s) 319, 439, 526, 652, 1295
BstC8I GCNNGC 3 cut(s) 93, 210, 1285
BstDEI CTNAG 7 cut(s) 37, 156, 170, 401, 617, 1701, 1803
BstDSI CCRYGG 1 cut(s) 150
BstF5I GGATG 4 cut(s) 285, 1015, 1075, 1240
BstFNI CGCG 4 cut(s) 51, 348, 482, 975
BstH2I RGCGCY 1 cut(s) 106
BstHHI GCGC 2 cut(s) 105, 484
BstKTI GATC 4 cut(s) 72, 253, 1498, 1594
BstMAI GTCTC 1 cut(s) 47
BstMBI GATC 4 cut(s) 69, 250, 1495, 1591
BstMCI CGRYCG 1 cut(s) 346
BstMWI GCNNNNNNNGC 3 cut(s) 97, 1280, 1706
BstNI CCWGG 3 cut(s) 140, 164, 176
BstNSI RCATGY 2 cut(s) 1743, 1802
BstPAI GACNNNNGTC 1 cut(s) 342
BstSCI CCNGG 4 cut(s) 108, 138, 162, 174
BstSFI CTRYAG 1 cut(s) 98
BstUI CGCG 4 cut(s) 51, 348, 482, 975
BstV1I GCAGC 3 cut(s) 112, 1319, 1718
BstX2I RGATCY 1 cut(s) 69
BstYI RGATCY 1 cut(s) 69
BsuRI GGCC 5 cut(s) 143, 179, 263, 570, 1287
BtgI CCRYGG 1 cut(s) 150
BtsCI GGATG 4 cut(s) 285, 1015, 1075, 1240
BtsI GCAGTG 1 cut(s) 947
BtsIMutI CAGTG 1 cut(s) 947
BveI ACCTGC 1 cut(s) 475
Cac8I GCNNGC 3 cut(s) 93, 210, 1285
CaiI CAGNNNCTG 1 cut(s) 169
CfoI GCGC 2 cut(s) 105, 484
Cfr13I GGNCC 4 cut(s) 142, 271, 547, 569
Csp6I GTAC 4 cut(s) 217, 522, 640, 1407
CviAII CATG 4 cut(s) 1352, 1520, 1740, 1799
CviQI GTAC 4 cut(s) 217, 522, 640, 1407
DdeI CTNAG 7 cut(s) 37, 156, 170, 401, 617, 1701, 1803
DpnI GATC 4 cut(s) 71, 252, 1497, 1593
DpnII GATC 4 cut(s) 69, 250, 1495, 1591
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 2 cut(s) 261, 1285
Ecl136II GAGCTC 2 cut(s) 400, 1617
Eco147I AGGCCT 1 cut(s) 179
Eco24I GRGCYC 2 cut(s) 402, 1619
Eco31I GGTCTC 1 cut(s) 47
Eco47I GGWCC 2 cut(s) 271, 547
Eco53kI GAGCTC 2 cut(s) 400, 1617
Eco57I CTGAAG 1 cut(s) 1071
EcoICRI GAGCTC 2 cut(s) 400, 1617
EcoRI GAATTC 2 cut(s) 1717, 1751
EcoRII CCWGG 3 cut(s) 138, 162, 174
EcoT38I GRGCYC 2 cut(s) 402, 1619
FaeI CATG 4 cut(s) 1355, 1523, 1743, 1802
FaqI GGGAC 5 cut(s) 121, 257, 459, 698, 1601
FatI CATG 4 cut(s) 1351, 1519, 1739, 1798
FauI CCCGC 1 cut(s) 648
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 4 cut(s) 101, 568, 1308, 1707
FokI GGATG 4 cut(s) 272, 1022, 1082, 1247
FriOI GRGCYC 2 cut(s) 402, 1619
Fsp4HI GCNGC 4 cut(s) 101, 568, 1308, 1707
FspBI CTAG 1 cut(s) 1722
GlaI GCGC 2 cut(s) 104, 483
GluI GCNGC 4 cut(s) 101, 568, 1308, 1707
HaeII RGCGCY 1 cut(s) 106
HaeIII GGCC 5 cut(s) 143, 179, 263, 570, 1287
HapII CCGG 7 cut(s) 110, 129, 327, 342, 452, 577, 1399
HhaI GCGC 2 cut(s) 105, 484
Hin1II CATG 4 cut(s) 1355, 1523, 1743, 1802
Hin6I GCGC 2 cut(s) 103, 482
HinP1I GCGC 2 cut(s) 103, 482
HpaII CCGG 7 cut(s) 110, 129, 327, 342, 452, 577, 1399
Hpy166II GTNNAC 2 cut(s) 364, 547
Hpy188I TCNGA 3 cut(s) 13, 196, 337
Hpy188III TCNNGA 5 cut(s) 953, 1028, 1268, 1339, 1761
Hpy8I GTNNAC 2 cut(s) 364, 547
Hpy99I CGWCG 2 cut(s) 13, 68
HpyCH4III ACNGT 5 cut(s) 319, 439, 526, 652, 1295
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 3 cut(s) 100, 986, 1307
HpyF10VI GCNNNNNNNGC 3 cut(s) 97, 1280, 1706
HpyF3I CTNAG 7 cut(s) 37, 156, 170, 401, 617, 1701, 1803
HpySE526I ACGT 1 cut(s) 408
Hsp92II CATG 4 cut(s) 1355, 1523, 1743, 1802
HspAI GCGC 2 cut(s) 103, 482
Kzo9I GATC 4 cut(s) 69, 250, 1495, 1591
LmnI GCTCC 7 cut(s) 166, 236, 454, 808, 868, 1424, 1507
Lsp1109I GCAGC 3 cut(s) 112, 1319, 1718
LweI GCATC 3 cut(s) 1012, 1556, 1718
MaeI CTAG 1 cut(s) 1722
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 4 cut(s) 487, 1339, 1733, 1770
MalI GATC 4 cut(s) 71, 252, 1497, 1593
MbiI CCGCTC 3 cut(s) 75, 231, 567
MboI GATC 4 cut(s) 69, 250, 1495, 1591
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 1 cut(s) 69
MhlI GDGCHC 2 cut(s) 402, 1619
MlyI GAGTC 5 cut(s) 215, 272, 332, 1007, 1751
MmeI TCCRAC 4 cut(s) 219, 360, 750, 1207
MseI TTAA 3 cut(s) 927, 1488, 1512
MslI CAYNNNNRTG 2 cut(s) 317, 1785
MspI CCGG 7 cut(s) 110, 129, 327, 342, 452, 577, 1399
MspR9I CCNGG 4 cut(s) 110, 140, 164, 176
MunI CAATTG 1 cut(s) 1002
MvaI CCWGG 3 cut(s) 140, 164, 176
MvnI CGCG 4 cut(s) 51, 348, 482, 975
MwoI GCNNNNNNNGC 3 cut(s) 97, 1280, 1706
NciI CCSGG 1 cut(s) 110
NdeII GATC 4 cut(s) 69, 250, 1495, 1591
NlaIII CATG 4 cut(s) 1355, 1523, 1743, 1802
NlaIV GGNNCC 3 cut(s) 23, 273, 810
NmeAIII GCCGAG 2 cut(s) 56, 239
NmuCI GTSAC 3 cut(s) 487, 1339, 1733
NspI RCATGY 2 cut(s) 1743, 1802
OliI CACNNNNGTG 1 cut(s) 317
PaqCI CACCTGC 1 cut(s) 475
PceI AGGCCT 1 cut(s) 179
PfeI GAWTC 5 cut(s) 351, 949, 1331, 1460, 1541
PflFI GACNNNGTC 1 cut(s) 281
PfoI TCCNGGA 1 cut(s) 162
PkrI GCNGC 4 cut(s) 102, 569, 1309, 1708
PleI GAGTC 5 cut(s) 215, 272, 332, 1006, 1751
PpsI GAGTC 5 cut(s) 215, 272, 332, 1006, 1751
PshAI GACNNNNGTC 1 cut(s) 342
PshBI ATTAAT 1 cut(s) 1488
PsiI TTATAA 1 cut(s) 501
Psp124BI GAGCTC 2 cut(s) 402, 1619
Psp6I CCWGG 3 cut(s) 138, 162, 174
PspGI CCWGG 3 cut(s) 138, 162, 174
PspN4I GGNNCC 3 cut(s) 23, 273, 810
PspPI GGNCC 4 cut(s) 142, 271, 547, 569
PstI CTGCAG 1 cut(s) 102
PstNI CAGNNNCTG 1 cut(s) 169
PsuI RGATCY 1 cut(s) 69
PsyI GACNNNGTC 1 cut(s) 281
RsaI GTAC 4 cut(s) 218, 523, 641, 1408
RsaNI GTAC 4 cut(s) 217, 522, 640, 1407
RseI CAYNNNNRTG 2 cut(s) 317, 1785
SacI GAGCTC 2 cut(s) 402, 1619
SaqAI TTAA 3 cut(s) 927, 1488, 1512
SatI GCNGC 4 cut(s) 101, 568, 1308, 1707
Sau3AI GATC 4 cut(s) 69, 250, 1495, 1591
Sau96I GGNCC 4 cut(s) 142, 271, 547, 569
SchI GAGTC 5 cut(s) 215, 272, 332, 1007, 1751
ScrFI CCNGG 4 cut(s) 110, 140, 164, 176
SduI GDGCHC 2 cut(s) 402, 1619
SfaNI GCATC 3 cut(s) 1012, 1556, 1718
SfcI CTRYAG 1 cut(s) 98
SinI GGWCC 2 cut(s) 271, 547
SmiMI CAYNNNNRTG 2 cut(s) 317, 1785
SmlI CTYRAG 3 cut(s) 1026, 1618, 1759
SmoI CTYRAG 3 cut(s) 1026, 1618, 1759
SseBI AGGCCT 1 cut(s) 179
SsiI CCGC 9 cut(s) 19, 73, 229, 348, 567, 655, 973, 1545, 1743
SspMI CTAG 1 cut(s) 1722
SstI GAGCTC 2 cut(s) 402, 1619
StuI AGGCCT 1 cut(s) 179
StyD4I CCNGG 4 cut(s) 108, 138, 162, 174
TaaI ACNGT 5 cut(s) 319, 439, 526, 652, 1295
TaiI ACGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 962, 1755
TaqII GACCGA 2 cut(s) 259, 271
TatI WGTACW 2 cut(s) 639, 1406
TauI GCSGC 1 cut(s) 570
TfiI GAWTC 5 cut(s) 351, 949, 1331, 1460, 1541
Tru1I TTAA 3 cut(s) 927, 1488, 1512
Tru9I TTAA 3 cut(s) 927, 1488, 1512
TscAI CASTG 1 cut(s) 947
TseFI GTSAC 3 cut(s) 487, 1339, 1733
TseI GCWGC 3 cut(s) 100, 1307, 1706
Tsp45I GTSAC 3 cut(s) 487, 1339, 1733
TspDTI ATGAA 6 cut(s) 1026, 1110, 1197, 1209, 1340, 1530
TspRI CASTG 1 cut(s) 947
Tth111I GACNNNGTC 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 271, 547
VspI ATTAAT 1 cut(s) 1488
XapI RAATTY 5 cut(s) 384, 463, 668, 1717, 1751
XceI RCATGY 2 cut(s) 1743, 1802
XmiI GTMKAC 1 cut(s) 363
XspI CTAG 1 cut(s) 1722
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.