Rroxscaffold_3G00270820

dnaJ homolog subfamily C member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010033
Physical Location & Seq
Forward (+)
63304426 .. 63307336
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00270820.1

Sequence Viewer

Length: 1944 bp
ATGGAGCGGCGGTGCCACTACGAGGTGCTCGGCGTCGACCGCGGCTGCACCGCCGACGAGATCAAGTCGGCGTACCGGAAACTCGCCCTGCAGCGCCACCCCGACAAGCTCATCCCCACCGGCGTCTCCCAGGCCGACGCCAACGCCCAGTTCCAGGAGCTCGGCCACGCCTACGAGGTCCTCTCCGACCCCAAGGAGCGAGCCTGGTACGACTCCCACCGCTCCCAGATCCTCTTCGCCGATCCCTCCGCCGCCAACTCCGTCCCCGACTCCGTCATCCCCAACCTCTTCAGCTTCTTCTCCACCACCGTCTTCTCCGGCTACTCCGACTCCGGCAAGGGCTTCTACAAGGTCTACGCCGACGTCTTCAATAAAATCTACTCGAACGAGCTGAGTTTCGCGAGGAAGTTAGGGTTAGGGATTGACGCCGTGAGGGAGGCTCCGGCGTTGGGGAATTTGAAGAGCGATTATGCTCAGGTGACGGCGTTTTATGGCTACTGGCTAGGTTTTTGTACGGTGATGGATTTCTGCTGGGTGGATCAGTATGACGTCATGGCGGGGCCGAATCGGAAGGTGAGGAGGTTGATGGAGGAGGATAATAAGAAGCAGAGGAAGAAGGCTAAGAGAGAGTATAATGACACTGTGCGGGGGTTGGCGGAGTTTGTGAAGAAGAGGGATAAGAGGGTGATGGATATGATGGTGAAGAGGGAGGAGGAGAGGGAGAGGAGGAAGAAGGAGGAGAGGGAGAAGAAGAAGAAGATGGAGAAGGAGAAATTGGAGAGAGCTATGGCGTATGAGGAGCCGGAGTGGGCGAAAGTGGTTGAGGAGGAAGAGGAAGGGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGAAGAGGAACGAGTTGTATTGTGTGGTGTGTGGGAAGAAGTTTAAGAGTGAGAAGCAGTGGAAGAATCATGAGCAGTCAAAGAAGCATAAGGATAAGATTGCGGAGTTTAGGGAGTCGATTGGGGATGAAGAGCTTGATGAAGAGGAAGTGGATGATTTAGGTGAGCAAATGAGGGAGGGTTTGGAGATTGGGGAGGAGGATGATGGGGCTGGAGTGAGTGCCGGCGAGGATGAGTTTTATGATTTTGGTGATGAAATTCAGAGGGAAAACCTTGATGATGATGATGAGGATGATAATGGTGGTGGTGATGATGATGATGAGATGGAACTTCTTCAAGCAATGGCGGCCAGGCACAAGAGTAGGGAAAAGCTTGATGTTGATGGTGATGGTGATGACGACGACGACGACGGTGAAATGGAACTTCTAAAAGCAATGGCAGCCAGGCAGAAGAGTGGGGAAAATGTTGGTGAAGCAGTTGGAGTTGATGACGGTGATAGTGGGAGCGAGGATGAAATGGATGTTCTTGAAGCAATGGTGGCAGGGCGAAAGAGTAGAAAAAATGCAGCTTCAAGGGTTGAGGTTGAGGATCCGTTGGTGACTGGTGTTCATGTGGATCATGATAGCAATGGCGTAGAGTCCATTCCTATGGAATATGAGAATCGGAAGCCCACCAGAAGGAAAGGGAAGAGTAAGAAGAGTGGTGGAGAAACTAAAAGGGTCGATACGAATGAAATTAGTAATGGTCAAAGTGAGGCAGCTAGTGATAATGATAATTCAGATATGAAGGAATCCACATCTGATTCTATGGTGGAAAATGCGAGTACTAACAATAAACAGGATGATCAAATAGCCAGAAAGAAGAAATCTTCGAAACAAACTGTTGAGAAGAAGAAAGAGAACGTGAAGAAAGAGGGCAACGGCAAATCAAAGAGCTCCTCCAAAGGGAAGAAAGCTAAGGCAACGTCAAAGAATTCTAGCAATGCATGTGAGGCATGTGGAGAGGAGTTTGGATCAAGGAATCAATTACATAAGCATTTAGGTGACACTGGACATGCTTCACTGAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ zf-C2H2_jaz

Protein Analysis

647

Amino Acids

73.25

Weight (kDa)

4.94

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 6 - 71 7.3e-22 DnaJ domain
ZUO1-like_ZHD PF21884 120 - 229 7.7e-21 Zuotin-like, zuotin homology domain
zf-C2H2_jaz PF12171 296 - 321 1.6e-10 Zinc-finger double-stranded RNA-binding
zf-met PF12874 296 - 320 1.9e-08 Zinc-finger of C2H2 type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 366, 552
AccB1I GGYRCC 1 cut(s) 12
AccBSI CCGCTC 2 cut(s) 7, 222
AccI GTMKAC 2 cut(s) 36, 354
AccII CGCG 2 cut(s) 42, 401
AclWI GGATC 7 cut(s) 223, 236, 546, 1454, 1467, 1494, 1891
AcoI YGGCCR 2 cut(s) 163, 1218
AcsI RAATTY 3 cut(s) 454, 1128, 1843
AcuI CTGAAG 1 cut(s) 274
AcyI GRCGYC 6 cut(s) 33, 123, 138, 363, 426, 549
AfaI GTAC 4 cut(s) 74, 209, 514, 1696
AfiI CCNNNNNNNGG 5 cut(s) 22, 154, 449, 1548, 1815
AgsI TTSAA 5 cut(s) 370, 460, 1208, 1400, 1443
AjnI CCWGG 5 cut(s) 129, 153, 203, 1220, 1313
AjuI GAANNNNNNNTTGG 4 cut(s) 134, 166, 758, 790
Alw21I GWGCWC 3 cut(s) 30, 162, 1808
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 7 cut(s) 223, 236, 546, 1454, 1467, 1494, 1891
AoxI GGCC 4 cut(s) 132, 163, 560, 1218
ApeKI GCWGC 5 cut(s) 45, 91, 1310, 1436, 1628
ApoI RAATTY 3 cut(s) 454, 1128, 1843
Asp700I GAANNNNTTC 1 cut(s) 1203
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 178, 560
AsuII TTCGAA 1 cut(s) 1742
AvaII GGWCC 1 cut(s) 178
BamHI GGATCC 1 cut(s) 1459
BanI GGYRCC 1 cut(s) 12
BanII GRGCYC 2 cut(s) 162, 1808
BbsI GAAGAC 2 cut(s) 304, 358
Bbv12I GWGCWC 3 cut(s) 30, 162, 1808
BbvI GCAGC 5 cut(s) 32, 103, 1322, 1448, 1640
BccI CCATC 9 cut(s) 514, 580, 682, 691, 754, 1070, 1189, 1247, 1253
BceAI ACGGC 3 cut(s) 413, 498, 1807
BciT130I CCWGG 5 cut(s) 131, 155, 205, 1222, 1315
BclI TGATCA 1 cut(s) 1714
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 3 cut(s) 503, 1632, 1848
BfmI CTRYAG 1 cut(s) 89
BfoI RGCGCY 1 cut(s) 97
BisI GCNGC 9 cut(s) 8, 43, 46, 92, 252, 1218, 1311, 1437, 1629
BlsI GCNGC 9 cut(s) 9, 44, 47, 93, 253, 1219, 1312, 1438, 1630
BmcAI AGTACT 1 cut(s) 1696
Bme1390I CCNGG 5 cut(s) 131, 155, 205, 1222, 1315
Bme18I GGWCC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 178, 560
BmiI GGNNCC 5 cut(s) 14, 441, 561, 801, 1461
BmrFI CCNGG 5 cut(s) 131, 155, 205, 1222, 1315
BmrI ACTGGG 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 142
BpiI GAAGAC 2 cut(s) 304, 358
BplI GAGNNNNNCTC 4 cut(s) 167, 199, 424, 456
BpmI CTGGAG 1 cut(s) 1104
Bpu10I CCTNAGC 2 cut(s) 474, 1827
Bpu14I TTCGAA 1 cut(s) 1742
BsaHI GRCGYC 6 cut(s) 33, 123, 138, 363, 426, 549
BsaJI CCNNGG 3 cut(s) 40, 129, 192
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 5 cut(s) 26, 314, 344, 791, 821
Bsc4I CCNNNNNNNGG 5 cut(s) 22, 154, 449, 1548, 1815
Bse118I RCCGGY 2 cut(s) 119, 1094
Bse1I ACTGG 4 cut(s) 148, 503, 1477, 1924
Bse3DI GCAATG 5 cut(s) 1218, 1311, 1410, 1504, 1858
BseBI CCWGG 5 cut(s) 131, 155, 205, 1222, 1315
BseDI CCNNGG 3 cut(s) 40, 129, 192
BseLI CCNNNNNNNGG 5 cut(s) 22, 154, 449, 1548, 1815
BseMI GCAATG 5 cut(s) 1218, 1311, 1410, 1504, 1858
BseMII CTCAG 2 cut(s) 383, 488
BseNI ACTGG 4 cut(s) 148, 503, 1477, 1924
BseXI GCAGC 5 cut(s) 32, 103, 1322, 1448, 1640
BseYI CCCAGC 1 cut(s) 531
BsgI GTGCAG 1 cut(s) 31
Bsh1236I CGCG 2 cut(s) 42, 401
Bsh1285I CGRYCG 1 cut(s) 40
BshFI GGCC 4 cut(s) 134, 165, 562, 1220
BshNI GGYRCC 1 cut(s) 12
BsiEI CGRYCG 1 cut(s) 40
BsiHKAI GWGCWC 3 cut(s) 30, 162, 1808
BsiSI CCGG 7 cut(s) 76, 120, 318, 333, 443, 803, 1095
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 5 cut(s) 22, 154, 449, 1548, 1815
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 4 cut(s) 134, 165, 562, 1220
Bsp119I TTCGAA 1 cut(s) 1742
Bsp1286I GDGCHC 3 cut(s) 30, 162, 1808
Bsp143I GATC 8 cut(s) 60, 228, 241, 538, 1459, 1486, 1714, 1883
Bsp68I TCGCGA 1 cut(s) 401
BspANI GGCC 4 cut(s) 134, 165, 562, 1220
BspCNI CTCAG 2 cut(s) 384, 487
BspFNI CGCG 2 cut(s) 42, 401
BspHI TCATGA 2 cut(s) 940, 1489
BspLI GGNNCC 5 cut(s) 14, 441, 561, 801, 1461
BspMAI CTGCAG 1 cut(s) 93
BspPI GGATC 7 cut(s) 223, 236, 546, 1454, 1467, 1494, 1891
BspQI GCTCTTC 2 cut(s) 455, 996
BspT104I TTCGAA 1 cut(s) 1742
BspT107I GGYRCC 1 cut(s) 12
BsrBI CCGCTC 2 cut(s) 7, 222
BsrDI GCAATG 5 cut(s) 1218, 1311, 1410, 1504, 1858
BsrFI RCCGGY 2 cut(s) 119, 1094
BsrI ACTGG 4 cut(s) 148, 503, 1477, 1924
BssAI RCCGGY 2 cut(s) 119, 1094
BssECI CCNNGG 3 cut(s) 40, 129, 192
BssMI GATC 8 cut(s) 60, 228, 241, 538, 1459, 1486, 1714, 1883
BssNI GRCGYC 6 cut(s) 33, 123, 138, 363, 426, 549
BssT1I CCWWGG 1 cut(s) 192
Bst2UI CCWGG 5 cut(s) 131, 155, 205, 1222, 1315
Bst4CI ACNGT 6 cut(s) 310, 517, 643, 1283, 1364, 1753
BstACI GRCGYC 6 cut(s) 33, 123, 138, 363, 426, 549
BstBI TTCGAA 1 cut(s) 1742
BstC8I GCNNGC 2 cut(s) 201, 1096
BstDEI CTNAG 4 cut(s) 392, 474, 621, 1827
BstDSI CCRYGG 1 cut(s) 40
BstFNI CGCG 2 cut(s) 42, 401
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 8 cut(s) 63, 231, 244, 541, 1462, 1489, 1717, 1886
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 8 cut(s) 60, 228, 241, 538, 1459, 1486, 1714, 1883
BstMCI CGRYCG 1 cut(s) 40
BstMWI GCNNNNNNNGC 5 cut(s) 39, 1217, 1310, 1409, 1862
BstNI CCWGG 5 cut(s) 131, 155, 205, 1222, 1315
BstNSI RCATGY 3 cut(s) 1860, 1869, 1928
BstSCI CCNGG 5 cut(s) 129, 153, 203, 1220, 1313
BstSFI CTRYAG 1 cut(s) 89
BstUI CGCG 2 cut(s) 42, 401
BstV1I GCAGC 5 cut(s) 32, 103, 1322, 1448, 1640
BstV2I GAAGAC 2 cut(s) 304, 358
BstX2I RGATCY 2 cut(s) 228, 1459
BstXI CCANNNNNNTGG 1 cut(s) 1519
BstYI RGATCY 2 cut(s) 228, 1459
BsuRI GGCC 4 cut(s) 134, 165, 562, 1220
BtgI CCRYGG 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 935
BtsIMutI CAGTG 4 cut(s) 639, 935, 1917, 1931
BtuMI TCGCGA 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 201, 1096
CciI TCATGA 2 cut(s) 940, 1489
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 119, 1094
Cfr13I GGNCC 2 cut(s) 178, 560
Cfr42I CCGCGG 1 cut(s) 43
CseI GACGC 4 cut(s) 22, 112, 146, 434
Csp6I GTAC 4 cut(s) 73, 208, 513, 1695
CviAII CATG 7 cut(s) 553, 941, 1481, 1490, 1857, 1866, 1925
CviQI GTAC 4 cut(s) 73, 208, 513, 1695
DdeI CTNAG 4 cut(s) 392, 474, 621, 1827
DpnI GATC 8 cut(s) 62, 230, 243, 540, 1461, 1488, 1716, 1885
DpnII GATC 8 cut(s) 60, 228, 241, 538, 1459, 1486, 1714, 1883
EaeI YGGCCR 2 cut(s) 163, 1218
EciI GGCGGA 2 cut(s) 238, 671
Ecl136II GAGCTC 2 cut(s) 160, 1806
Eco130I CCWWGG 1 cut(s) 192
Eco24I GRGCYC 2 cut(s) 162, 1808
Eco47I GGWCC 1 cut(s) 178
Eco53kI GAGCTC 2 cut(s) 160, 1806
Eco57I CTGAAG 1 cut(s) 274
EcoICRI GAGCTC 2 cut(s) 160, 1806
EcoO109I RGGNCCY 1 cut(s) 178
EcoRI GAATTC 1 cut(s) 1843
EcoRII CCWGG 5 cut(s) 129, 153, 203, 1220, 1313
EcoT14I CCWWGG 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 1858
EcoT38I GRGCYC 2 cut(s) 162, 1808
ErhI CCWWGG 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 7 cut(s) 556, 944, 1484, 1493, 1860, 1869, 1928
FaqI GGGAC 1 cut(s) 248
FatI CATG 7 cut(s) 552, 940, 1480, 1489, 1856, 1865, 1924
FauI CCCGC 2 cut(s) 550, 639
FbaI TGATCA 1 cut(s) 1714
FblI GTMKAC 2 cut(s) 36, 354
Fnu4HI GCNGC 9 cut(s) 8, 43, 46, 92, 252, 1218, 1311, 1437, 1629
FriOI GRGCYC 2 cut(s) 162, 1808
Fsp4HI GCNGC 9 cut(s) 8, 43, 46, 92, 252, 1218, 1311, 1437, 1629
FspBI CTAG 3 cut(s) 503, 1632, 1848
GlaI GCGC 1 cut(s) 95
GluI GCNGC 9 cut(s) 8, 43, 46, 92, 252, 1218, 1311, 1437, 1629
GsaI CCCAGC 1 cut(s) 535
GsuI CTGGAG 1 cut(s) 1104
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 4 cut(s) 134, 165, 562, 1220
HapII CCGG 7 cut(s) 76, 120, 318, 333, 443, 803, 1095
HgaI GACGC 4 cut(s) 22, 112, 146, 434
HhaI GCGC 1 cut(s) 96
Hin1I GRCGYC 6 cut(s) 33, 123, 138, 363, 426, 549
Hin1II CATG 7 cut(s) 556, 944, 1484, 1493, 1860, 1869, 1928
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HindIII AAGCTT 1 cut(s) 1241
HpaII CCGG 7 cut(s) 76, 120, 318, 333, 443, 803, 1095
Hpy166II GTNNAC 2 cut(s) 37, 355
Hpy188I TCNGA 7 cut(s) 187, 328, 570, 1134, 1536, 1651, 1672
Hpy188III TCNNGA 4 cut(s) 400, 941, 1397, 1490
Hpy8I GTNNAC 2 cut(s) 37, 355
Hpy99I CGWCG 8 cut(s) 38, 59, 140, 365, 1274, 1277, 1280, 1283
HpyAV CCTTC 7 cut(s) 565, 610, 727, 760, 830, 1542, 1651
HpyCH4III ACNGT 6 cut(s) 310, 517, 643, 1283, 1364, 1753
HpyCH4IV ACGT 4 cut(s) 363, 549, 1773, 1835
HpyCH4V TGCA 4 cut(s) 48, 91, 1436, 1856
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 1217, 1310, 1409, 1862
HpyF3I CTNAG 4 cut(s) 392, 474, 621, 1827
HpySE526I ACGT 4 cut(s) 363, 549, 1773, 1835
Hsp92I GRCGYC 6 cut(s) 33, 123, 138, 363, 426, 549
Hsp92II CATG 7 cut(s) 556, 944, 1484, 1493, 1860, 1869, 1928
HspAI GCGC 1 cut(s) 94
KroI GCCGGC 1 cut(s) 1094
KroNI GCCGGC 1 cut(s) 1096
Ksp22I TGATCA 1 cut(s) 1714
KspI CCGCGG 1 cut(s) 43
Kzo9I GATC 8 cut(s) 60, 228, 241, 538, 1459, 1486, 1714, 1883
LguI GCTCTTC 2 cut(s) 455, 996
LmnI GCTCC 8 cut(s) 4, 157, 196, 227, 445, 799, 1374, 1811
Lsp1109I GCAGC 5 cut(s) 32, 103, 1322, 1448, 1640
MaeI CTAG 3 cut(s) 503, 1632, 1848
MaeII ACGT 4 cut(s) 363, 549, 1773, 1835
MaeIII GTNAC 3 cut(s) 478, 1468, 1913
MalI GATC 8 cut(s) 62, 230, 243, 540, 1461, 1488, 1716, 1885
MbiI CCGCTC 2 cut(s) 7, 222
MboI GATC 8 cut(s) 60, 228, 241, 538, 1459, 1486, 1714, 1883
MflI RGATCY 2 cut(s) 228, 1459
MhlI GDGCHC 3 cut(s) 30, 162, 1808
MluCI AATT 7 cut(s) 454, 773, 1128, 1605, 1645, 1843, 1895
MlyI GAGTC 5 cut(s) 206, 263, 323, 995, 1517
MmeI TCCRAC 3 cut(s) 210, 351, 1330
Mph1103I ATGCAT 1 cut(s) 1858
MroNI GCCGGC 1 cut(s) 1094
MroXI GAANNNNTTC 1 cut(s) 1203
MseI TTAA 1 cut(s) 915
MslI CAYNNNNRTG 2 cut(s) 1517, 1911
MspA1I CMGCKG 1 cut(s) 42
MspI CCGG 7 cut(s) 76, 120, 318, 333, 443, 803, 1095
MspR9I CCNGG 5 cut(s) 131, 155, 205, 1222, 1315
MvaI CCWGG 5 cut(s) 131, 155, 205, 1222, 1315
MvnI CGCG 2 cut(s) 42, 401
MwoI GCNNNNNNNGC 5 cut(s) 39, 1217, 1310, 1409, 1862
NaeI GCCGGC 1 cut(s) 1096
NdeII GATC 8 cut(s) 60, 228, 241, 538, 1459, 1486, 1714, 1883
NgoMIV GCCGGC 1 cut(s) 1094
NlaIII CATG 7 cut(s) 556, 944, 1484, 1493, 1860, 1869, 1928
NlaIV GGNNCC 5 cut(s) 14, 441, 561, 801, 1461
NmeAIII GCCGAG 2 cut(s) 9, 141
NmuCI GTSAC 3 cut(s) 478, 1468, 1913
NruI TCGCGA 1 cut(s) 401
NsiI ATGCAT 1 cut(s) 1858
NspI RCATGY 3 cut(s) 1860, 1869, 1928
NspV TTCGAA 1 cut(s) 1742
PagI TCATGA 2 cut(s) 940, 1489
PciSI GCTCTTC 2 cut(s) 455, 996
PcsI WCGNNNNNNNCGW 1 cut(s) 1275
PdiI GCCGGC 1 cut(s) 1096
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 6 cut(s) 565, 937, 1531, 1661, 1673, 1891
PflFI GACNNNGTC 1 cut(s) 272
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 9 cut(s) 9, 44, 47, 93, 253, 1219, 1312, 1438, 1630
PleI GAGTC 5 cut(s) 206, 263, 323, 994, 1516
PpsI GAGTC 5 cut(s) 206, 263, 323, 994, 1516
PpuMI RGGWCCY 1 cut(s) 178
Psp124BI GAGCTC 2 cut(s) 162, 1808
Psp5II RGGWCCY 1 cut(s) 178
Psp6I CCWGG 5 cut(s) 129, 153, 203, 1220, 1313
PspFI CCCAGC 1 cut(s) 531
PspGI CCWGG 5 cut(s) 129, 153, 203, 1220, 1313
PspN4I GGNNCC 5 cut(s) 14, 441, 561, 801, 1461
PspPI GGNCC 2 cut(s) 178, 560
PspPPI RGGWCCY 1 cut(s) 178
PstI CTGCAG 1 cut(s) 93
PsuI RGATCY 2 cut(s) 228, 1459
PsyI GACNNNGTC 1 cut(s) 272
RruI TCGCGA 1 cut(s) 401
RsaI GTAC 4 cut(s) 74, 209, 514, 1696
RsaNI GTAC 4 cut(s) 73, 208, 513, 1695
RseI CAYNNNNRTG 2 cut(s) 1517, 1911
SacI GAGCTC 2 cut(s) 162, 1808
SacII CCGCGG 1 cut(s) 43
SalI GTCGAC 1 cut(s) 35
SapI GCTCTTC 2 cut(s) 455, 996
SaqAI TTAA 1 cut(s) 915
SatI GCNGC 9 cut(s) 8, 43, 46, 92, 252, 1218, 1311, 1437, 1629
Sau3AI GATC 8 cut(s) 60, 228, 241, 538, 1459, 1486, 1714, 1883
Sau96I GGNCC 2 cut(s) 178, 560
ScaI AGTACT 1 cut(s) 1696
SchI GAGTC 5 cut(s) 206, 263, 323, 995, 1517
ScrFI CCNGG 5 cut(s) 131, 155, 205, 1222, 1315
SduI GDGCHC 3 cut(s) 30, 162, 1808
SfcI CTRYAG 1 cut(s) 89
Sfr303I CCGCGG 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 1742
SgrAI CRCCGGYG 1 cut(s) 119
SgrBI CCGCGG 1 cut(s) 43
SinI GGWCC 1 cut(s) 178
SmiMI CAYNNNNRTG 2 cut(s) 1517, 1911
Sse9I AATT 7 cut(s) 454, 773, 1128, 1605, 1645, 1843, 1895
SspMI CTAG 3 cut(s) 503, 1632, 1848
SstI GAGCTC 2 cut(s) 162, 1808
StyD4I CCNGG 5 cut(s) 129, 153, 203, 1220, 1313
StyI CCWWGG 1 cut(s) 192
TaaI ACNGT 6 cut(s) 310, 517, 643, 1283, 1364, 1753
TaiI ACGT 4 cut(s) 366, 552, 1776, 1838
TaqI TCGA 5 cut(s) 36, 383, 989, 1593, 1742
TasI AATT 7 cut(s) 454, 773, 1128, 1605, 1645, 1843, 1895
TatI WGTACW 1 cut(s) 1694
TauI GCSGC 4 cut(s) 10, 45, 254, 1220
TfiI GAWTC 6 cut(s) 565, 937, 1531, 1661, 1673, 1891
Tru1I TTAA 1 cut(s) 915
Tru9I TTAA 1 cut(s) 915
TscAI CASTG 4 cut(s) 646, 935, 1924, 1938
TseFI GTSAC 3 cut(s) 478, 1468, 1913
TseI GCWGC 5 cut(s) 45, 91, 1310, 1436, 1628
Tsp45I GTSAC 3 cut(s) 478, 1468, 1913
TspDTI ATGAA 7 cut(s) 1014, 1026, 1140, 1398, 1469, 1617, 1670
TspGWI ACGGA 3 cut(s) 250, 262, 1452
TspRI CASTG 4 cut(s) 646, 935, 1924, 1938
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 178
XapI RAATTY 3 cut(s) 454, 1128, 1843
XceI RCATGY 3 cut(s) 1860, 1869, 1928
XmiI GTMKAC 2 cut(s) 36, 354
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 3 cut(s) 503, 1632, 1848
ZraI GACGTC 2 cut(s) 364, 550
ZrmI AGTACT 1 cut(s) 1696
Zsp2I ATGCAT 1 cut(s) 1858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.