Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0010033

Physical Location & Seq

Genomic Coordinates Forward (+)

58118515 .. 58119573

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0452000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCCACAAACAGCAGAGAAGCCCGAAGGAGGAGGATCCTGGAGAGAGGGTCCGACCGCCTAGCTCTAATAACGGGTCGGATCCAAACACTACCATCTTCCTCTTCATCACCCGACCCACAAACCCAGTTTGAAGATACAACAAACCCATCTTCTCCGCCGCCAACTTCCGATGTTCAGGACCAAATCGCCGAGTTGCCTTCTGAGATTGAAGAAAACGAGTCTGATTCAACATTGCCAAGAAGCCAATCTGATACAAACACTGAAGCCTTGAGGGCCATTGATACCCAAGTCCAGCAACTCCTCTCCTCATTAACAGCTCAAAATGCACCACCACCACCACCACCATCATCGTCTGAAAATCAAAGGCGGCCGCTTTTCACTGCCAGTGGAGTGAGTAGTGCCATTGCAGAAACAGAAAGAACCCGCCTTTTGTTTTCGGTAGCAGTAGCAATGTTGGTGGTTTTAGTTCATCTGGGTTTTCCTTTGATGGGGACTAGTAACATAGTGAAGACCCTGTTGGGTTTTCGGCCGTTGTACTTGGTTTTGCTGACCAATGTGACATTTGTGCTGGCAAGGATTCTTGGTAAGCAGAGAGTCTCTGAAAGGCCTGGAGAGATTAGAACTTCGGCTGAAGGAATTGAGTGGGTTGCGCAGTTAGGGAGGGCTGTAGAGATAGGCTTGGTAGCGCAGAAGGTACTTGATGCTCTGTTTATGGATTGTGCTGTGTATGCAATAATAGTTGTATGTGGTCTCTCTTCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ zf-C2H2_jaz

Protein Analysis

255

Amino Acids

27.59

Weight (kDa)

5.21

Isoelectric Point (pI)

59.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010033)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74250
fragaria_vesca	FvH4_5g13920
malus_domestica	MD06G1202400.v1.1 MD14G1211500.v1.1
prunus_persica	Prupe.5G204600_v2.0.a1 Prupe.5G204600_v2.0.a1 Prupe.5G204600_v2.0.a1
pyrus_communis	pycom06g17840 pycom14g17510
rosa_chinensis	RchiOBHm_Chr7g0183041
rosa_laevigata	RLG00000005085
rosa_multiflora	Rmu_sc0000014.1_g000005 Rmu_sc0021698.1_g000001 Rmu_ssc0000111.1_g000001
rosa_roxburghii	Rroxscaffold_3G00270820
rosa_rugosa	Rorug06G0452000
rosa_samantha	Rh7AG055500 Rh7BG054900 Rh7CG056200 Rh7DG055000
rosa_wichuraiana	Rw7G004510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	654
AciI	CCGC	6 cut(s)	58, 158, 161, 370, 374, 427
AclWI	GGATC	4 cut(s)	31, 44, 76, 89
AcoI	YGGCCR	3 cut(s)	3, 371, 530
AcuI	CTGAAG	2 cut(s)	285, 654
AfaI	GTAC	2 cut(s)	539, 699
AfiI	CCNNNNNNNGG	2 cut(s)	30, 491
AgsI	TTSAA	3 cut(s)	134, 212, 231
AhlI	ACTAGT	1 cut(s)	497
AjnI	CCWGG	2 cut(s)	39, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	2 cut(s)	65, 320
AluI	AGCT	2 cut(s)	65, 320
Alw26I	GTCTC	2 cut(s)	604, 758
AlwI	GGATC	4 cut(s)	31, 44, 76, 89
AoxI	GGCC	5 cut(s)	3, 276, 371, 530, 608
AspLEI	GCGC	2 cut(s)	655, 691
AspS9I	GGNCC	3 cut(s)	51, 181, 276
AsuHPI	GGTGA	1 cut(s)	102
AvaII	GGWCC	2 cut(s)	51, 181
BaeI	ACNNNNGTAYC	2 cut(s)	276, 309
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	2 cut(s)	36, 81
BbsI	GAAGAC	1 cut(s)	518
BccI	CCATC	4 cut(s)	103, 157, 355, 484
BceAI	ACGGC	1 cut(s)	517
BciT130I	CCWGG	2 cut(s)	41, 612
BcoDI	GTCTC	2 cut(s)	604, 758
BcuI	ACTAGT	1 cut(s)	497
BfaI	CTAG	2 cut(s)	62, 498
BfmI	CTRYAG	1 cut(s)	669
BglI	GCCNNNNNGGC	1 cut(s)	275
BisI	GCNGC	3 cut(s)	161, 371, 374
BlsI	GCNGC	3 cut(s)	162, 372, 375
Bme1390I	CCNGG	2 cut(s)	41, 612
Bme18I	GGWCC	2 cut(s)	51, 181
BmgT120I	GGNCC	3 cut(s)	51, 181, 276
BmiI	GGNNCC	3 cut(s)	38, 52, 83
BmrFI	CCNGG	2 cut(s)	41, 612
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	1 cut(s)	694
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	518
BpmI	CTGGAG	2 cut(s)	62, 633
BpuEI	CTTGAG	1 cut(s)	292
BsaI	GGTCTC	1 cut(s)	758
BsaXI	ACNNNNNCTCC	2 cut(s)	35, 65
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 491
Bse1I	ACTGG	2 cut(s)	127, 387
Bse3DI	GCAATG	3 cut(s)	233, 405, 459
BseBI	CCWGG	2 cut(s)	41, 612
BseLI	CCNNNNNNNGG	2 cut(s)	30, 491
BseMI	GCAATG	3 cut(s)	233, 405, 459
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	127, 387
BseRI	GAGGAG	3 cut(s)	46, 293, 298
BseX3I	CGGCCG	2 cut(s)	371, 530
Bsh1285I	CGRYCG	3 cut(s)	58, 374, 533
BshFI	GGCC	5 cut(s)	5, 278, 373, 532, 610
BsiEI	CGRYCG	3 cut(s)	58, 374, 533
BslFI	GGGAC	1 cut(s)	508
BslI	CCNNNNNNNGG	2 cut(s)	30, 491
BsmAI	GTCTC	2 cut(s)	604, 758
BsmFI	GGGAC	1 cut(s)	508
BsnI	GGCC	5 cut(s)	5, 278, 373, 532, 610
Bso31I	GGTCTC	1 cut(s)	758
Bsp143I	GATC	2 cut(s)	36, 81
BspACI	CCGC	6 cut(s)	58, 158, 161, 370, 374, 427
BspANI	GGCC	5 cut(s)	5, 278, 373, 532, 610
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	38, 52, 83
BspPI	GGATC	4 cut(s)	31, 44, 76, 89
BspTNI	GGTCTC	1 cut(s)	758
BsrDI	GCAATG	3 cut(s)	233, 405, 459
BsrI	ACTGG	2 cut(s)	127, 387
BssMI	GATC	2 cut(s)	36, 81
Bst2UI	CCWGG	2 cut(s)	41, 612
Bst6I	CTCTTC	2 cut(s)	109, 763
BstC8I	GCNNGC	1 cut(s)	573
BstDEI	CTNAG	1 cut(s)	204
BstHHI	GCGC	2 cut(s)	655, 691
BstKTI	GATC	2 cut(s)	39, 84
BstMAI	GTCTC	2 cut(s)	604, 758
BstMBI	GATC	2 cut(s)	36, 81
BstMCI	CGRYCG	3 cut(s)	58, 374, 533
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 326, 731
BstNI	CCWGG	2 cut(s)	41, 612
BstSCI	CCNGG	2 cut(s)	39, 610
BstSFI	CTRYAG	1 cut(s)	669
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	2 cut(s)	36, 81
BstYI	RGATCY	2 cut(s)	36, 81
BstZI	CGGCCG	2 cut(s)	371, 530
BsuRI	GGCC	5 cut(s)	5, 278, 373, 532, 610
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	3 cut(s)	261, 381, 394
Cac8I	GCNNGC	1 cut(s)	573
CciNI	GCGGCCGC	1 cut(s)	371
CfoI	GCGC	2 cut(s)	655, 691
Cfr13I	GGNCC	3 cut(s)	51, 181, 276
Csp6I	GTAC	2 cut(s)	538, 698
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviQI	GTAC	2 cut(s)	538, 698
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	2 cut(s)	38, 83
DpnII	GATC	2 cut(s)	36, 81
EaeI	YGGCCR	3 cut(s)	3, 371, 530
EagI	CGGCCG	2 cut(s)	371, 530
Eam1104I	CTCTTC	2 cut(s)	109, 763
EarI	CTCTTC	2 cut(s)	109, 763
EciI	GGCGGA	1 cut(s)	147
EclXI	CGGCCG	2 cut(s)	371, 530
Eco147I	AGGCCT	1 cut(s)	610
Eco31I	GGTCTC	1 cut(s)	758
Eco47I	GGWCC	2 cut(s)	51, 181
Eco52I	CGGCCG	2 cut(s)	371, 530
Eco57I	CTGAAG	2 cut(s)	285, 654
EcoRII	CCWGG	2 cut(s)	39, 610
FaiI	YATR	5 cut(s)	506, 716, 732, 748, 766
FaqI	GGGAC	1 cut(s)	508
FauI	CCCGC	1 cut(s)	434
Fnu4HI	GCNGC	3 cut(s)	161, 371, 374
Fsp4HI	GCNGC	3 cut(s)	161, 371, 374
FspBI	CTAG	2 cut(s)	62, 498
FspI	TGCGCA	1 cut(s)	654
GlaI	GCGC	2 cut(s)	654, 690
GluI	GCNGC	3 cut(s)	161, 371, 374
GsuI	CTGGAG	2 cut(s)	62, 633
HaeIII	GGCC	5 cut(s)	5, 278, 373, 532, 610
HhaI	GCGC	2 cut(s)	655, 691
Hin6I	GCGC	2 cut(s)	653, 689
HinP1I	GCGC	2 cut(s)	653, 689
HinfI	GANTC	4 cut(s)	221, 227, 580, 597
HphI	GGTGA	1 cut(s)	102
Hpy188I	TCNGA	8 cut(s)	55, 81, 172, 205, 226, 253, 358, 604
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	4 cut(s)	21, 210, 629, 688
HpyCH4V	TGCA	4 cut(s)	329, 410, 734, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 326, 731
HpyF3I	CTNAG	1 cut(s)	204
HspAI	GCGC	2 cut(s)	653, 689
Kzo9I	GATC	2 cut(s)	36, 81
LweI	GCATC	1 cut(s)	694
MaeI	CTAG	2 cut(s)	62, 498
MaeIII	GTNAC	2 cut(s)	500, 559
MalI	GATC	2 cut(s)	38, 83
MboI	GATC	2 cut(s)	36, 81
MboII	GAAGA	7 cut(s)	90, 96, 144, 146, 224, 523, 750
MflI	RGATCY	2 cut(s)	36, 81
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	639
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	230, 606
MmeI	TCCRAC	2 cut(s)	59, 78
MnlI	CCTC	8 cut(s)	24, 27, 41, 112, 267, 314, 319, 657
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	41, 612
MvaI	CCWGG	2 cut(s)	41, 612
MwoI	GCNNNNNNNGC	3 cut(s)	275, 326, 731
NdeII	GATC	2 cut(s)	36, 81
NlaIV	GGNNCC	3 cut(s)	38, 52, 83
NmeAIII	GCCGAG	1 cut(s)	217
NmuCI	GTSAC	1 cut(s)	559
NotI	GCGGCCGC	1 cut(s)	371
NsbI	TGCGCA	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	227, 580
PfoI	TCCNGGA	1 cut(s)	39
PkrI	GCNGC	3 cut(s)	162, 372, 375
PleI	GAGTC	2 cut(s)	229, 605
PpsI	GAGTC	2 cut(s)	229, 605
Psp6I	CCWGG	2 cut(s)	39, 610
PspGI	CCWGG	2 cut(s)	39, 610
PspN4I	GGNNCC	3 cut(s)	38, 52, 83
PspPI	GGNCC	3 cut(s)	51, 181, 276
PsuI	RGATCY	2 cut(s)	36, 81
RsaI	GTAC	2 cut(s)	539, 699
RsaNI	GTAC	2 cut(s)	538, 698
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	3 cut(s)	161, 371, 374
Sau3AI	GATC	2 cut(s)	36, 81
Sau96I	GGNCC	3 cut(s)	51, 181, 276
SchI	GAGTC	2 cut(s)	230, 606
ScrFI	CCNGG	2 cut(s)	41, 612
SetI	ASST	3 cut(s)	67, 322, 699
SfaNI	GCATC	1 cut(s)	694
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	2 cut(s)	51, 181
SmlI	CTYRAG	1 cut(s)	271
SmoI	CTYRAG	1 cut(s)	271
SpeI	ACTAGT	1 cut(s)	497
Sse9I	AATT	1 cut(s)	639
SseBI	AGGCCT	1 cut(s)	610
SsiI	CCGC	6 cut(s)	58, 158, 161, 370, 374, 427
SspMI	CTAG	2 cut(s)	62, 498
StuI	AGGCCT	1 cut(s)	610
StyD4I	CCNGG	2 cut(s)	39, 610
TasI	AATT	1 cut(s)	639
TatI	WGTACW	1 cut(s)	537
TauI	GCSGC	3 cut(s)	163, 373, 376
TfiI	GAWTC	2 cut(s)	227, 580
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	3 cut(s)	268, 388, 394
TseFI	GTSAC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	2 cut(s)	96, 461
TspRI	CASTG	3 cut(s)	268, 388, 394
VpaK11BI	GGWCC	2 cut(s)	51, 181
XspI	CTAG	2 cut(s)	62, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.