Prupe.5G231000_v2.0.a1

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0012959
Physical Location & Seq
Reverse (-)
17629017 .. 17631139
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G231000.1

Sequence Viewer

Length: 1023 bp
ATGTCCCCAGCAAACCCACCGCTCTTCACCATCTTCTGCTTCCTCTGCACTCTCTTCCCTGCCTTCCCGGGTGCACCCATACCCGACCCGGCCCCGTCCCCAGTCCAGTCGTCATTCCTCCCAACCCGAACTCCATATCCCCCTGCTGCTACAATCCCTGCATTCCCAGAACAATCTGACATAGCCGGGTGCCCGCTCCACCTCCCAAATGAGCTCTTTCACGGCATAAAGTCCGCATGCTCCGCCACAAAAGGCGACTCCTTAGGGAAGCTGCAGCACAGCAGGTGCTGCCCTGTGCTTGCGGCGTGGCTTTATGATGCCTACTCTGCCACCGCCCTCGGCGGAGGCGGCAGAGTGGGCCCAGCAGCGGCGGGTAACAGCAACACCACTTATGACCCGCCATTGCTGCCAGATGACTCAGAAACTTGCGTTCAGGACCTGGGCGAGGCGCTGAAAACCAGAGGAATAGAACTGATCAAGCCAAATGAGACGTGTGATGTGGTGTATTGTTATTGTGGGATAAGATTGCACCCTTTGAGTTGTCCTGAGGCATTTTCAGTGAACCAAAGGGGGAAACTTGTTGGGGATGCGAGCGTGAAGCGGTTGGAGAGAAATTGCTTGAGCAGCAGTGGATTTCCGGGTCTTGGTGGCTGCTCCAAATGCTTGAAAAGCCTCCACCTTCTTAACAAGAAGAAGACTTTCAATTCAAGCAAATTAGAGGACAGGACCACCAAAATGCACAACAAAGATTGTCAACTGATGGGTCTCACATGGCTACTTGCTAAGAATCGAACGGCTTACATCCACACAGTTACATCTGTGTTCCGGGCCATCATGGTAAGCGCCGATGGCTCCGATCCTCAATCGTGCACTCTCAACAGTGATGGAATGCCTCTAGCCGTCGATTCTTCTGAAATATCTGATAATTCCTCATCCAGTATCCTTGCAGCTTCCATCTCTCTCTGCGTCATGTCACTTTCTTTCTTATTTGTGCAGCTTACCCTACGCTCCAACCAAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

341

Amino Acids

36.23

Weight (kDa)

7.44

Isoelectric Point (pI)

59.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18050
fragaria_vesca FvH4_5g17140 FvH4_5g17140
malus_domestica MD06G1230000.v1.1 MD14G1234700.v1.1
prunus_persica Prupe.5G231000_v2.0.a1
pyrus_communis pycom06g20120 pycom14g19570
rosa_chinensis RchiOBHm_Chr7g0178651
rosa_laevigata RLG00000005426
rosa_multiflora Rmu_sc0002320.1_g000008
rosa_roxburghii Rroxscaffold_3G00274740
rosa_rugosa Rorug06G0418700
rosa_samantha Rh7AG017500 Rh7BG017100 Rh7CG017700 Rh7DG017700
rosa_wichuraiana Rw7G001420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 273
Acc36I ACCTGC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 189
AccBSI CCGCTC 2 cut(s) 22, 196
AclWI GGATC 1 cut(s) 851
AfiI CCNNNNNNNGG 3 cut(s) 367, 445, 644
AflIII ACRYGT 1 cut(s) 491
AgsI TTSAA 3 cut(s) 667, 703, 708
AjiI CACGTC 1 cut(s) 492
AjnI CCWGG 1 cut(s) 438
AloI GAACNNNNNNTCC 2 cut(s) 121, 153
AluBI AGCT 4 cut(s) 214, 271, 950, 997
AluI AGCT 4 cut(s) 214, 271, 950, 997
Alw21I GWGCWC 3 cut(s) 76, 216, 872
Alw26I GTCTC 2 cut(s) 482, 770
Alw44I GTGCAC 2 cut(s) 72, 868
AlwI GGATC 1 cut(s) 851
AlwNI CAGNNNCTG 2 cut(s) 288, 439
Ama87I CYCGRG 1 cut(s) 67
AoxI GGCC 3 cut(s) 90, 358, 828
ApaI GGGCCC 1 cut(s) 362
ApaLI GTGCAC 2 cut(s) 72, 868
Asp700I GAANNNNTTC 1 cut(s) 698
AspLEI GCGC 2 cut(s) 451, 845
AspS9I GGNCC 6 cut(s) 91, 358, 359, 436, 726, 828
AsuC2I CCSGG 6 cut(s) 68, 69, 89, 187, 639, 827
AsuHPI GGTGA 1 cut(s) 19
AvaI CYCGRG 1 cut(s) 67
AvaII GGWCC 2 cut(s) 436, 726
AxyI CCTNAGG 2 cut(s) 262, 546
BaeGI GKGCMC 4 cut(s) 76, 194, 362, 872
BanI GGYRCC 1 cut(s) 189
BanII GRGCYC 2 cut(s) 216, 362
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 3 cut(s) 76, 216, 872
BccI CCATC 6 cut(s) 38, 754, 839, 842, 878, 962
BceAI ACGGC 3 cut(s) 238, 810, 884
BciT130I CCWGG 1 cut(s) 440
BciVI GTATCC 1 cut(s) 950
BclI TGATCA 1 cut(s) 474
BcnI CCSGG 6 cut(s) 68, 69, 89, 187, 639, 827
BcoDI GTCTC 2 cut(s) 482, 770
BfaI CTAG 1 cut(s) 896
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 2 cut(s) 452, 846
BfuAI ACCTGC 1 cut(s) 273
BfuI GTATCC 1 cut(s) 950
Bme1390I CCNGG 7 cut(s) 68, 69, 89, 187, 440, 639, 827
Bme18I GGWCC 2 cut(s) 436, 726
BmeT110I CYCGRG 1 cut(s) 67
BmgBI CACGTC 1 cut(s) 492
BmgT120I GGNCC 6 cut(s) 91, 358, 359, 436, 726, 828
BmiI GGNNCC 4 cut(s) 93, 191, 360, 853
BmrFI CCNGG 7 cut(s) 68, 69, 89, 187, 440, 639, 827
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 2 cut(s) 307, 577
BmuI ACTGGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 640
BpuMI CCSGG 6 cut(s) 68, 69, 89, 187, 639, 827
BsaI GGTCTC 1 cut(s) 770
BsaJI CCNNGG 3 cut(s) 67, 337, 439
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bsc4I CCNNNNNNNGG 3 cut(s) 367, 445, 644
Bse1I ACTGG 3 cut(s) 101, 106, 936
Bse21I CCTNAGG 2 cut(s) 262, 546
Bse3DI GCAATG 1 cut(s) 401
BseBI CCWGG 1 cut(s) 440
BseDI CCNNGG 3 cut(s) 67, 337, 439
BseGI GGATG 3 cut(s) 592, 801, 932
BseLI CCNNNNNNNGG 3 cut(s) 367, 445, 644
BseMI GCAATG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 432, 537
BseNI ACTGG 3 cut(s) 101, 106, 936
BseSI GKGCMC 4 cut(s) 76, 194, 362, 872
BseYI CCCAGC 2 cut(s) 7, 361
BsgI GTGCAG 2 cut(s) 31, 1013
BshFI GGCC 3 cut(s) 92, 360, 830
BshNI GGYRCC 1 cut(s) 189
BsiHKAI GWGCWC 3 cut(s) 76, 216, 872
BsiHKCI CYCGRG 1 cut(s) 67
BsiSI CCGG 5 cut(s) 68, 89, 186, 638, 826
BslFI GGGAC 1 cut(s) 82
BslI CCNNNNNNNGG 3 cut(s) 367, 445, 644
BsmAI GTCTC 2 cut(s) 482, 770
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 1 cut(s) 82
BsmI GAATGC 2 cut(s) 161, 894
BsnI GGCC 3 cut(s) 92, 360, 830
Bso31I GGTCTC 1 cut(s) 770
BsoBI CYCGRG 1 cut(s) 67
Bsp120I GGGCCC 1 cut(s) 358
Bsp1286I GDGCHC 5 cut(s) 76, 194, 216, 362, 872
Bsp143I GATC 2 cut(s) 474, 856
BspANI GGCC 3 cut(s) 92, 360, 830
BspCNI CTCAG 2 cut(s) 431, 538
BspLI GGNNCC 4 cut(s) 93, 191, 360, 853
BspMAI CTGCAG 1 cut(s) 276
BspMI ACCTGC 1 cut(s) 273
BspPI GGATC 1 cut(s) 851
BspQI GCTCTTC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 770
BsrBI CCGCTC 2 cut(s) 22, 196
BsrDI GCAATG 1 cut(s) 401
BsrI ACTGG 3 cut(s) 101, 106, 936
BssECI CCNNGG 3 cut(s) 67, 337, 439
BssMI GATC 2 cut(s) 474, 856
Bst2UI CCWGG 1 cut(s) 440
Bst4CI ACNGT 2 cut(s) 811, 881
Bst6I CTCTTC 2 cut(s) 29, 59
BstAPI GCANNNNNTGC 1 cut(s) 288
BstC8I GCNNGC 4 cut(s) 194, 238, 300, 592
BstDEI CTNAG 4 cut(s) 262, 418, 546, 783
BstENI CCTNNNNNAGG 1 cut(s) 443
BstF5I GGATG 3 cut(s) 592, 801, 932
BstH2I RGCGCY 2 cut(s) 452, 846
BstHHI GCGC 2 cut(s) 451, 845
BstKTI GATC 2 cut(s) 477, 859
BstMAI GTCTC 2 cut(s) 482, 770
BstMBI GATC 2 cut(s) 474, 856
BstNI CCWGG 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 7 cut(s) 66, 67, 87, 185, 438, 637, 825
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 4 cut(s) 76, 194, 362, 872
BstV2I GAAGAC 1 cut(s) 701
Bsu36I CCTNAGG 2 cut(s) 262, 546
BsuI GTATCC 1 cut(s) 950
BsuRI GGCC 3 cut(s) 92, 360, 830
BtrI CACGTC 1 cut(s) 492
BtsCI GGATG 3 cut(s) 592, 801, 932
BtsI GCAGTG 1 cut(s) 634
BtsIMutI CAGTG 3 cut(s) 564, 634, 886
BveI ACCTGC 1 cut(s) 273
Cac8I GCNNGC 4 cut(s) 194, 238, 300, 592
CaiI CAGNNNCTG 2 cut(s) 288, 439
CfoI GCGC 2 cut(s) 451, 845
Cfr13I GGNCC 6 cut(s) 91, 358, 359, 436, 726, 828
Cfr9I CCCGGG 1 cut(s) 67
CseI GACGC 1 cut(s) 955
CviAII CATG 4 cut(s) 237, 771, 835, 970
DdeI CTNAG 4 cut(s) 262, 418, 546, 783
DpnI GATC 2 cut(s) 476, 858
DpnII GATC 2 cut(s) 474, 856
Eam1104I CTCTTC 2 cut(s) 29, 59
EarI CTCTTC 2 cut(s) 29, 59
EciI GGCGGA 2 cut(s) 232, 357
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 2 cut(s) 216, 362
Eco31I GGTCTC 1 cut(s) 770
Eco47I GGWCC 2 cut(s) 436, 726
Eco53kI GAGCTC 1 cut(s) 214
Eco81I CCTNAGG 2 cut(s) 262, 546
Eco88I CYCGRG 1 cut(s) 67
EcoICRI GAGCTC 1 cut(s) 214
EcoNI CCTNNNNNAGG 1 cut(s) 443
EcoO109I RGGNCCY 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 438
EcoT38I GRGCYC 2 cut(s) 216, 362
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 4 cut(s) 240, 774, 838, 973
FaqI GGGAC 1 cut(s) 82
FatI CATG 4 cut(s) 236, 770, 834, 969
FauI CCCGC 3 cut(s) 201, 364, 405
FbaI TGATCA 1 cut(s) 474
FokI GGATG 3 cut(s) 599, 788, 919
FriOI GRGCYC 2 cut(s) 216, 362
FspBI CTAG 1 cut(s) 896
GlaI GCGC 2 cut(s) 450, 844
GsaI CCCAGC 2 cut(s) 11, 365
HaeII RGCGCY 2 cut(s) 452, 846
HaeIII GGCC 3 cut(s) 92, 360, 830
HapII CCGG 5 cut(s) 68, 89, 186, 638, 826
HgaI GACGC 1 cut(s) 955
HhaI GCGC 2 cut(s) 451, 845
Hin1II CATG 4 cut(s) 240, 774, 838, 973
Hin6I GCGC 2 cut(s) 449, 843
HinP1I GCGC 2 cut(s) 449, 843
HincII GTYRAC 1 cut(s) 755
HindII GTYRAC 1 cut(s) 755
HinfI GANTC 4 cut(s) 257, 416, 787, 905
HpaII CCGG 5 cut(s) 68, 89, 186, 638, 826
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 4 cut(s) 74, 562, 755, 870
Hpy188I TCNGA 5 cut(s) 178, 421, 856, 913, 922
Hpy188III TCNNGA 2 cut(s) 434, 545
Hpy8I GTNNAC 4 cut(s) 74, 562, 755, 870
Hpy99I CGWCG 1 cut(s) 905
HpyAV CCTTC 2 cut(s) 73, 689
HpyCH4III ACNGT 2 cut(s) 811, 881
HpyCH4IV ACGT 1 cut(s) 491
HpyCH4V TGCA 9 cut(s) 48, 74, 161, 274, 529, 739, 870, 947, 994
HpyF3I CTNAG 4 cut(s) 262, 418, 546, 783
HpySE526I ACGT 1 cut(s) 491
Hsp92II CATG 4 cut(s) 240, 774, 838, 973
HspAI GCGC 2 cut(s) 449, 843
Ksp22I TGATCA 1 cut(s) 474
Kzo9I GATC 2 cut(s) 474, 856
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 5 cut(s) 201, 245, 659, 857, 1013
LweI GCATC 2 cut(s) 307, 577
MaeI CTAG 1 cut(s) 896
MaeII ACGT 1 cut(s) 491
MaeIII GTNAC 3 cut(s) 374, 811, 972
MalI GATC 2 cut(s) 476, 858
MbiI CCGCTC 2 cut(s) 22, 196
MboI GATC 2 cut(s) 474, 856
MboII GAAGA 6 cut(s) 16, 25, 46, 703, 706, 900
MhlI GDGCHC 5 cut(s) 76, 194, 216, 362, 872
MluCI AATT 4 cut(s) 613, 703, 713, 925
MlyI GAGTC 2 cut(s) 251, 410
MmeI TCCRAC 1 cut(s) 585
MroXI GAANNNNTTC 1 cut(s) 698
MseI TTAA 1 cut(s) 684
MslI CAYNNNNRTG 1 cut(s) 734
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 5 cut(s) 68, 89, 186, 638, 826
MspR9I CCNGG 7 cut(s) 68, 69, 89, 187, 440, 639, 827
Mva1269I GAATGC 2 cut(s) 161, 894
MvaI CCWGG 1 cut(s) 440
NciI CCSGG 6 cut(s) 68, 69, 89, 187, 639, 827
NdeII GATC 2 cut(s) 474, 856
NlaIII CATG 4 cut(s) 240, 774, 838, 973
NlaIV GGNNCC 4 cut(s) 93, 191, 360, 853
NmeAIII GCCGAG 1 cut(s) 318
NmuCI GTSAC 1 cut(s) 972
NspI RCATGY 1 cut(s) 240
PaeI GCATGC 1 cut(s) 240
PaqCI CACCTGC 1 cut(s) 273
PciSI GCTCTTC 1 cut(s) 29
PctI GAATGC 2 cut(s) 161, 894
PdmI GAANNNNTTC 1 cut(s) 698
PfeI GAWTC 2 cut(s) 787, 905
PleI GAGTC 2 cut(s) 251, 410
PpsI GAGTC 2 cut(s) 251, 410
PpuMI RGGWCCY 1 cut(s) 436
Psp124BI GAGCTC 1 cut(s) 216
Psp5II RGGWCCY 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 438
PspFI CCCAGC 2 cut(s) 7, 361
PspGI CCWGG 1 cut(s) 438
PspN4I GGNNCC 4 cut(s) 93, 191, 360, 853
PspOMI GGGCCC 1 cut(s) 358
PspPI GGNCC 6 cut(s) 91, 358, 359, 436, 726, 828
PspPPI RGGWCCY 1 cut(s) 436
PstI CTGCAG 1 cut(s) 276
PstNI CAGNNNCTG 2 cut(s) 288, 439
RseI CAYNNNNRTG 1 cut(s) 734
SacI GAGCTC 1 cut(s) 216
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 684
Sau3AI GATC 2 cut(s) 474, 856
Sau96I GGNCC 6 cut(s) 91, 358, 359, 436, 726, 828
SchI GAGTC 2 cut(s) 251, 410
ScrFI CCNGG 7 cut(s) 68, 69, 89, 187, 440, 639, 827
SduI GDGCHC 5 cut(s) 76, 194, 216, 362, 872
SetI ASST 9 cut(s) 204, 216, 273, 287, 441, 494, 681, 952, 999
SfaNI GCATC 2 cut(s) 307, 577
SfcI CTRYAG 1 cut(s) 272
SinI GGWCC 2 cut(s) 436, 726
SmaI CCCGGG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 734
SmlI CTYRAG 1 cut(s) 619
SmoI CTYRAG 1 cut(s) 619
SphI GCATGC 1 cut(s) 240
Sse9I AATT 4 cut(s) 613, 703, 713, 925
SspMI CTAG 1 cut(s) 896
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 7 cut(s) 66, 67, 87, 185, 438, 637, 825
TaaI ACNGT 2 cut(s) 811, 881
TaiI ACGT 1 cut(s) 494
TaqI TCGA 2 cut(s) 790, 903
TasI AATT 4 cut(s) 613, 703, 713, 925
TauI GCSGC 3 cut(s) 305, 351, 371
TfiI GAWTC 2 cut(s) 787, 905
Tru1I TTAA 1 cut(s) 684
Tru9I TTAA 1 cut(s) 684
TscAI CASTG 3 cut(s) 564, 634, 886
TseFI GTSAC 1 cut(s) 972
Tsp45I GTSAC 1 cut(s) 972
TspMI CCCGGG 1 cut(s) 67
TspRI CASTG 3 cut(s) 564, 634, 886
VneI GTGCAC 2 cut(s) 72, 868
VpaK11BI GGWCC 2 cut(s) 436, 726
XagI CCTNNNNNAGG 1 cut(s) 443
XceI RCATGY 1 cut(s) 240
XmaI CCCGGG 1 cut(s) 67
XmnI GAANNNNTTC 1 cut(s) 698
XspI CTAG 1 cut(s) 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.