Rw7G001420

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0012959
Physical Location & Seq
Forward (+)
1154182 .. 1155906
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G001420.1

Sequence Viewer

Length: 978 bp
ATGTCCTCAAACCCACCACCACTCTTCACCTTCCTTGCTTCCTCTTCACTTTCCGGCCTTGGTGCAGTCATCCTTCCCGAATCTTCTCCCCCAGCTACAATCCCTGCATTCCCAGAGCAATCCGACATAGCCGGCTGCCCACTCCAGCTCCCTGATGAGCTCTTCCACGGCGTAAAGGAAGCCTGCTCCGCCAAAAAAGGCGACCCGACTGGCCATTTACAGCACAGCCGCTGCTGCCCAGTGCTGGCGGCGTGGCTATACTCGGCCTACTCCGCCACTGCACTGGGCAGAAGCGGCCAAGTAGGCCCTGCATTGGCGGGTCACGGTAGTACTACTACTACCGCTTATGACCCGCCACTGCTGCCTGATGACTCAGAAACTTGTGTTCAGGACTTGGGAAAGGCACTGAACGCAAAAGGAATAGAGCTGATGAAACCAAATGAGACCTGTGACATGGTCTATTGCTACTGTGGGATCAGATTGCACCCTTTGACCTGCCCTGAGGCATTTTCAGTGAACCAAAAAGGGAAACTTGTTGGGGATGAGAGTGTCAAGAAGTTGGAGAAGAATTGCTTGAGCAGCAGTACCAATGTCAATAAGTTCCCTGGTCTTGGTGGCTGCTCCAAATGCCTGAACAGTCTCTACCTTCTTAACAAGAAGAAGACTTCCAATTCAAGCAAAATGGAGGACAGGACCACCAAAATGCACAACAAAGACTGTCAGCTGATGGGTCTCACATGGCTCCTTGCCAAGAATCGGACGGCCTACATGCACACCGTTACATCCGTCTTCCGGGCTATCATGATAAGCAACGACGGCTCTGATCCTCAGTCGTGCACTCTCAACAGTGACGGAATGCCTCTAGCCGTCGATTCGTCGGAAATCTCAGATCAATCCTCTTCCAGCATCCTTGCAGTTTCAATCACATTCTGCACAGTGTCACTTACTTTGTTGTATGTGCAGCTTATCCTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

34.63

Weight (kDa)

6.37

Isoelectric Point (pI)

59.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18050
fragaria_vesca FvH4_5g17140 FvH4_5g17140
malus_domestica MD06G1230000.v1.1 MD14G1234700.v1.1
prunus_persica Prupe.5G231000_v2.0.a1
pyrus_communis pycom06g20120 pycom14g19570
rosa_chinensis RchiOBHm_Chr7g0178651
rosa_laevigata RLG00000005426
rosa_multiflora Rmu_sc0002320.1_g000008
rosa_roxburghii Rroxscaffold_3G00274740
rosa_rugosa Rorug06G0418700
rosa_samantha Rh7AG017500 Rh7BG017100 Rh7CG017700 Rh7DG017700
rosa_wichuraiana Rw7G001420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 503
AciI CCGC 8 cut(s) 189, 229, 248, 273, 294, 317, 342, 353
AclWI GGATC 2 cut(s) 482, 818
AcoI YGGCCR 2 cut(s) 211, 295
AfaI GTAC 2 cut(s) 331, 586
AfiI CCNNNNNNNGG 5 cut(s) 244, 313, 611, 756, 792
AgsI TTSAA 2 cut(s) 675, 921
AjnI CCWGG 1 cut(s) 604
AluBI AGCT 6 cut(s) 95, 148, 160, 427, 724, 964
AluI AGCT 6 cut(s) 95, 148, 160, 427, 724, 964
Alw21I GWGCWC 2 cut(s) 162, 839
Alw26I GTCTC 3 cut(s) 437, 644, 737
Alw44I GTGCAC 1 cut(s) 835
AlwI GGATC 2 cut(s) 482, 818
AlwNI CAGNNNCTG 1 cut(s) 231
AoxI GGCC 6 cut(s) 55, 211, 264, 295, 304, 762
ApaLI GTGCAC 1 cut(s) 835
ApeKI GCWGC 7 cut(s) 135, 231, 234, 361, 579, 618, 961
AspS9I GGNCC 2 cut(s) 305, 693
AsuC2I CCSGG 1 cut(s) 794
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 693
AxyI CCTNAGG 1 cut(s) 501
BaeGI GKGCMC 1 cut(s) 839
BalI TGGCCA 1 cut(s) 213
BanII GRGCYC 1 cut(s) 162
BbsI GAAGAC 2 cut(s) 668, 781
Bbv12I GWGCWC 2 cut(s) 162, 839
BbvI GCAGC 7 cut(s) 122, 218, 221, 348, 591, 605, 973
BccI CCATC 1 cut(s) 721
BceAI ACGGC 4 cut(s) 184, 777, 832, 851
BciT130I CCWGG 1 cut(s) 606
BcnI CCSGG 1 cut(s) 794
BcoDI GTCTC 3 cut(s) 437, 644, 737
BfaI CTAG 1 cut(s) 863
BfuAI ACCTGC 1 cut(s) 503
BglI GCCNNNNNGGC 1 cut(s) 303
BmcAI AGTACT 1 cut(s) 331
Bme1390I CCNGG 2 cut(s) 606, 794
Bme18I GGWCC 1 cut(s) 693
BmgT120I GGNCC 2 cut(s) 305, 693
BmiI GGNNCC 1 cut(s) 743
BmrFI CCNGG 2 cut(s) 606, 794
BmrI ACTGGG 2 cut(s) 233, 293
BmsI GCATC 1 cut(s) 915
BmuI ACTGGG 2 cut(s) 233, 293
BpiI GAAGAC 2 cut(s) 668, 781
BpmI CTGGAG 1 cut(s) 128
BpuEI CTTGAG 1 cut(s) 595
BpuMI CCSGG 1 cut(s) 794
BsaI GGTCTC 2 cut(s) 437, 737
BsaJI CCNNGG 3 cut(s) 58, 166, 604
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 5 cut(s) 244, 313, 611, 756, 792
Bse118I RCCGGY 1 cut(s) 131
Bse1I ACTGG 3 cut(s) 214, 239, 288
Bse21I CCTNAGG 1 cut(s) 501
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 58, 166, 604
BseGI GGATG 4 cut(s) 69, 547, 782, 906
BseLI CCNNNNNNNGG 5 cut(s) 244, 313, 611, 756, 792
BseMII CTCAG 4 cut(s) 387, 492, 842, 900
BseNI ACTGG 3 cut(s) 214, 239, 288
BseSI GKGCMC 1 cut(s) 839
BseXI GCAGC 7 cut(s) 122, 218, 221, 348, 591, 605, 973
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 3 cut(s) 84, 264, 916
BshFI GGCC 6 cut(s) 57, 213, 266, 297, 306, 764
BsiHKAI GWGCWC 2 cut(s) 162, 839
BsiSI CCGG 3 cut(s) 54, 132, 793
BslI CCNNNNNNNGG 5 cut(s) 244, 313, 611, 756, 792
BsmAI GTCTC 3 cut(s) 437, 644, 737
BsmI GAATGC 2 cut(s) 107, 861
BsnI GGCC 6 cut(s) 57, 213, 266, 297, 306, 764
Bso31I GGTCTC 2 cut(s) 437, 737
Bsp1286I GDGCHC 2 cut(s) 162, 839
Bsp143I GATC 3 cut(s) 474, 823, 889
BspACI CCGC 8 cut(s) 189, 229, 248, 273, 294, 317, 342, 353
BspANI GGCC 6 cut(s) 57, 213, 266, 297, 306, 764
BspCNI CTCAG 4 cut(s) 386, 493, 841, 899
BspHI TCATGA 1 cut(s) 801
BspLI GGNNCC 1 cut(s) 743
BspMI ACCTGC 1 cut(s) 503
BspPI GGATC 2 cut(s) 482, 818
BspQI GCTCTTC 1 cut(s) 167
BspTNI GGTCTC 2 cut(s) 437, 737
BsrFI RCCGGY 1 cut(s) 131
BsrI ACTGG 3 cut(s) 214, 239, 288
BssAI RCCGGY 1 cut(s) 131
BssECI CCNNGG 3 cut(s) 58, 166, 604
BssMI GATC 3 cut(s) 474, 823, 889
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 7 cut(s) 326, 470, 638, 719, 778, 848, 937
Bst6I CTCTTC 4 cut(s) 29, 49, 167, 904
BstC8I GCNNGC 3 cut(s) 133, 184, 246
BstDEI CTNAG 4 cut(s) 373, 501, 828, 886
BstDSI CCRYGG 1 cut(s) 166
BstF5I GGATG 4 cut(s) 69, 547, 782, 906
BstKTI GATC 3 cut(s) 477, 826, 892
BstMAI GTCTC 3 cut(s) 437, 644, 737
BstMBI GATC 3 cut(s) 474, 823, 889
BstNI CCWGG 1 cut(s) 606
BstNSI RCATGY 1 cut(s) 772
BstSCI CCNGG 2 cut(s) 604, 792
BstSLI GKGCMC 1 cut(s) 839
BstV1I GCAGC 7 cut(s) 122, 218, 221, 348, 591, 605, 973
BstV2I GAAGAC 2 cut(s) 668, 781
BstXI CCANNNNNNTGG 1 cut(s) 283
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 6 cut(s) 57, 213, 266, 297, 306, 764
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 4 cut(s) 69, 547, 782, 906
BtsI GCAGTG 2 cut(s) 276, 356
BtsIMutI CAGTG 8 cut(s) 246, 276, 281, 356, 404, 519, 853, 942
BveI ACCTGC 1 cut(s) 503
Cac8I GCNNGC 3 cut(s) 133, 184, 246
CaiI CAGNNNCTG 1 cut(s) 231
CciI TCATGA 1 cut(s) 801
Cfr10I RCCGGY 1 cut(s) 131
Cfr13I GGNCC 2 cut(s) 305, 693
Csp6I GTAC 2 cut(s) 330, 585
CviAII CATG 4 cut(s) 454, 738, 769, 802
CviQI GTAC 2 cut(s) 330, 585
DdeI CTNAG 4 cut(s) 373, 501, 828, 886
DpnI GATC 3 cut(s) 476, 825, 891
DpnII GATC 3 cut(s) 474, 823, 889
EaeI YGGCCR 2 cut(s) 211, 295
Eam1104I CTCTTC 4 cut(s) 29, 49, 167, 904
EarI CTCTTC 4 cut(s) 29, 49, 167, 904
EciI GGCGGA 2 cut(s) 178, 262
Ecl136II GAGCTC 1 cut(s) 160
Eco130I CCWWGG 1 cut(s) 58
Eco24I GRGCYC 1 cut(s) 162
Eco31I GGTCTC 2 cut(s) 437, 737
Eco47I GGWCC 1 cut(s) 693
Eco53kI GAGCTC 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 501
EcoICRI GAGCTC 1 cut(s) 160
EcoO109I RGGNCCY 1 cut(s) 305
EcoRII CCWGG 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 58
EcoT38I GRGCYC 1 cut(s) 162
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 4 cut(s) 457, 741, 772, 805
FaiI YATR 8 cut(s) 128, 259, 348, 455, 739, 770, 803, 957
FalI AAGNNNNNCTT 4 cut(s) 516, 548, 557, 589
FatI CATG 4 cut(s) 453, 737, 768, 801
FauI CCCGC 2 cut(s) 310, 360
FokI GGATG 4 cut(s) 56, 554, 769, 893
FriOI GRGCYC 1 cut(s) 162
FspBI CTAG 1 cut(s) 863
GsaI CCCAGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 6 cut(s) 57, 213, 266, 297, 306, 764
HapII CCGG 3 cut(s) 54, 132, 793
Hin1II CATG 4 cut(s) 457, 741, 772, 805
HinfI GANTC 4 cut(s) 80, 371, 754, 872
HpaII CCGG 3 cut(s) 54, 132, 793
HphI GGTGA 1 cut(s) 19
Hpy166II GTNNAC 2 cut(s) 517, 837
Hpy188I TCNGA 7 cut(s) 124, 376, 479, 759, 823, 880, 889
Hpy188III TCNNGA 4 cut(s) 77, 389, 553, 802
Hpy8I GTNNAC 2 cut(s) 517, 837
Hpy99I CGWCG 3 cut(s) 818, 872, 880
HpyAV CCTTC 3 cut(s) 40, 83, 656
HpyCH4III ACNGT 7 cut(s) 326, 470, 638, 719, 778, 848, 937
HpyF3I CTNAG 4 cut(s) 373, 501, 828, 886
Hsp92II CATG 4 cut(s) 457, 741, 772, 805
KroI GCCGGC 1 cut(s) 131
KroNI GCCGGC 1 cut(s) 133
Kzo9I GATC 3 cut(s) 474, 823, 889
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 4 cut(s) 153, 191, 626, 747
Lsp1109I GCAGC 7 cut(s) 122, 218, 221, 348, 591, 605, 973
LweI GCATC 1 cut(s) 915
MaeI CTAG 1 cut(s) 863
MaeIII GTNAC 5 cut(s) 320, 449, 778, 848, 939
MalI GATC 3 cut(s) 476, 825, 891
MboI GATC 3 cut(s) 474, 823, 889
MboII GAAGA 9 cut(s) 16, 36, 75, 154, 577, 670, 673, 781, 891
MhlI GDGCHC 2 cut(s) 162, 839
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 2 cut(s) 568, 670
MluNI TGGCCA 1 cut(s) 213
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 3 cut(s) 147, 540, 858
MnlI CCTC 7 cut(s) 16, 52, 496, 679, 837, 870, 907
Mox20I TGGCCA 1 cut(s) 213
MroNI GCCGGC 1 cut(s) 131
MscI TGGCCA 1 cut(s) 213
MseI TTAA 1 cut(s) 651
MslI CAYNNNNRTG 1 cut(s) 701
Msp20I TGGCCA 1 cut(s) 213
MspA1I CMGCKG 2 cut(s) 231, 724
MspI CCGG 3 cut(s) 54, 132, 793
MspR9I CCNGG 2 cut(s) 606, 794
Mva1269I GAATGC 2 cut(s) 107, 861
MvaI CCWGG 1 cut(s) 606
NaeI GCCGGC 1 cut(s) 133
NciI CCSGG 1 cut(s) 794
NdeII GATC 3 cut(s) 474, 823, 889
NgoMIV GCCGGC 1 cut(s) 131
NlaIII CATG 4 cut(s) 457, 741, 772, 805
NlaIV GGNNCC 1 cut(s) 743
NmeAIII GCCGAG 1 cut(s) 242
NmuCI GTSAC 4 cut(s) 320, 449, 848, 939
NspI RCATGY 1 cut(s) 772
PagI TCATGA 1 cut(s) 801
PciSI GCTCTTC 1 cut(s) 167
PctI GAATGC 2 cut(s) 107, 861
PdiI GCCGGC 1 cut(s) 133
PfeI GAWTC 3 cut(s) 80, 754, 872
PflFI GACNNNGTC 1 cut(s) 455
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 162
Psp6I CCWGG 1 cut(s) 604
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 1 cut(s) 743
PspPI GGNCC 2 cut(s) 305, 693
PsrI GAACNNNNNNTAC 2 cut(s) 626, 658
PstNI CAGNNNCTG 1 cut(s) 231
PsyI GACNNNGTC 1 cut(s) 455
PvuII CAGCTG 1 cut(s) 724
RsaI GTAC 2 cut(s) 331, 586
RsaNI GTAC 2 cut(s) 330, 585
RseI CAYNNNNRTG 1 cut(s) 701
SacI GAGCTC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 1 cut(s) 651
Sau3AI GATC 3 cut(s) 474, 823, 889
Sau96I GGNCC 2 cut(s) 305, 693
ScaI AGTACT 1 cut(s) 331
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 2 cut(s) 606, 794
SduI GDGCHC 2 cut(s) 162, 839
SfaNI GCATC 1 cut(s) 915
SfiI GGCCNNNNNGGCC 1 cut(s) 303
SinI GGWCC 1 cut(s) 693
SmiMI CAYNNNNRTG 1 cut(s) 701
SmlI CTYRAG 1 cut(s) 574
SmoI CTYRAG 1 cut(s) 574
Sse9I AATT 2 cut(s) 568, 670
SsiI CCGC 8 cut(s) 189, 229, 248, 273, 294, 317, 342, 353
SspMI CTAG 1 cut(s) 863
SstI GAGCTC 1 cut(s) 162
StyD4I CCNGG 2 cut(s) 604, 792
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 7 cut(s) 326, 470, 638, 719, 778, 848, 937
TaqI TCGA 1 cut(s) 870
TasI AATT 2 cut(s) 568, 670
TatI WGTACW 1 cut(s) 329
TauI GCSGC 3 cut(s) 231, 251, 297
TfiI GAWTC 3 cut(s) 80, 754, 872
Tru1I TTAA 1 cut(s) 651
Tru9I TTAA 1 cut(s) 651
TscAI CASTG 8 cut(s) 246, 283, 288, 363, 411, 519, 853, 942
TseFI GTSAC 4 cut(s) 320, 449, 848, 939
TseI GCWGC 7 cut(s) 135, 231, 234, 361, 579, 618, 961
Tsp45I GTSAC 4 cut(s) 320, 449, 848, 939
TspDTI ATGAA 1 cut(s) 446
TspGWI ACGGA 2 cut(s) 775, 867
TspRI CASTG 8 cut(s) 246, 283, 288, 363, 411, 519, 853, 942
Tth111I GACNNNGTC 1 cut(s) 455
VneI GTGCAC 1 cut(s) 835
VpaK11BI GGWCC 1 cut(s) 693
XceI RCATGY 1 cut(s) 772
XspI CTAG 1 cut(s) 863
ZrmI AGTACT 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.