Rroxscaffold_3G00274740

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0012959
Physical Location & Seq
Reverse (-)
66375550 .. 66377508
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00274740.1

Sequence Viewer

Length: 549 bp
ATGAAGCCAAATGAGACCTGTGACATGGTCTATTGCTACTGTGGGATCAGATTGCACCCTTTGACCTGCCCTGAGGCATTTTCAGTGAACCAAAAAGGGAAACTTGTTGGGGATGAGAGTGTCAAGAAGTTGGAGAAGAATTGCTTGAGCAGCAGTACCAATGTCAATAAGTTCCCCTGGTCTTGGGGCTGCTCCAAATGCCTGAACAGTCTCTACCTTCTTAACAAGAAGAAGACTTCCAATTCAAGCAAAATGGAGGACAGGACCACCAAAATGCACAACAAAGATTGTCAGCTGATGGGTCTCACATGGCTCCTTGCCAAGAATCGGACGGCCTACATGCACACCGTTACATCCGTCTTCCGGGCTATCATGGTAAGCAATGACGGCTCTGATCCTCAGTCGTGCACTCTCAACAGTGACGGAATGCCTCTAGCCGTCGATTCGTCGGAAATCTCAGATCAATCCTCGTCCAGCATCCTTGCAGTTTCAATCACATTCTGGATAGTGTCACTTTCTTTGTTGTATGTGCAGCTTACCCTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.26

Weight (kDa)

8.5

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18050
fragaria_vesca FvH4_5g17140 FvH4_5g17140
malus_domestica MD06G1230000.v1.1 MD14G1234700.v1.1
prunus_persica Prupe.5G231000_v2.0.a1
pyrus_communis pycom06g20120 pycom14g19570
rosa_chinensis RchiOBHm_Chr7g0178651
rosa_laevigata RLG00000005426
rosa_multiflora Rmu_sc0002320.1_g000008
rosa_roxburghii Rroxscaffold_3G00274740
rosa_rugosa Rorug06G0418700
rosa_samantha Rh7AG017500 Rh7BG017100 Rh7CG017700 Rh7DG017700
rosa_wichuraiana Rw7G001420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 74
AclWI GGATC 2 cut(s) 53, 389
AfaI GTAC 1 cut(s) 157
AfiI CCNNNNNNNGG 3 cut(s) 183, 327, 363
AgsI TTSAA 2 cut(s) 246, 492
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 2 cut(s) 295, 535
AluI AGCT 2 cut(s) 295, 535
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 3 cut(s) 8, 215, 308
Alw44I GTGCAC 1 cut(s) 406
AlwI GGATC 2 cut(s) 53, 389
AoxI GGCC 1 cut(s) 333
ApaLI GTGCAC 1 cut(s) 406
ApeKI GCWGC 3 cut(s) 150, 189, 532
AspS9I GGNCC 1 cut(s) 264
AsuC2I CCSGG 1 cut(s) 365
AvaII GGWCC 1 cut(s) 264
AxyI CCTNAGG 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 410
BbsI GAAGAC 2 cut(s) 239, 352
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 3 cut(s) 162, 176, 544
BccI CCATC 1 cut(s) 292
BceAI ACGGC 3 cut(s) 348, 403, 422
BciT130I CCWGG 1 cut(s) 178
BcnI CCSGG 1 cut(s) 365
BcoDI GTCTC 3 cut(s) 8, 215, 308
BfaI CTAG 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 74
BisI GCNGC 3 cut(s) 151, 190, 533
BlsI GCNGC 3 cut(s) 152, 191, 534
Bme1390I CCNGG 2 cut(s) 178, 365
Bme18I GGWCC 1 cut(s) 264
BmgT120I GGNCC 1 cut(s) 264
BmiI GGNNCC 1 cut(s) 314
BmrFI CCNGG 2 cut(s) 178, 365
BmsI GCATC 1 cut(s) 486
BpiI GAAGAC 2 cut(s) 239, 352
BpuEI CTTGAG 1 cut(s) 166
BpuMI CCSGG 1 cut(s) 365
BsaI GGTCTC 2 cut(s) 8, 308
BsaJI CCNNGG 1 cut(s) 176
Bsc4I CCNNNNNNNGG 3 cut(s) 183, 327, 363
Bse21I CCTNAGG 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 176
BseGI GGATG 3 cut(s) 118, 353, 477
BseLI CCNNNNNNNGG 3 cut(s) 183, 327, 363
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 3 cut(s) 63, 413, 471
BseSI GKGCMC 1 cut(s) 410
BseXI GCAGC 3 cut(s) 162, 176, 544
BshFI GGCC 1 cut(s) 335
BsiHKAI GWGCWC 1 cut(s) 410
BsiSI CCGG 1 cut(s) 364
BslI CCNNNNNNNGG 3 cut(s) 183, 327, 363
BsmAI GTCTC 3 cut(s) 8, 215, 308
BsmI GAATGC 1 cut(s) 432
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 2 cut(s) 8, 308
Bsp1286I GDGCHC 1 cut(s) 410
Bsp143I GATC 3 cut(s) 45, 394, 460
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 3 cut(s) 64, 412, 470
BspLI GGNNCC 1 cut(s) 314
BspMI ACCTGC 1 cut(s) 74
BspPI GGATC 2 cut(s) 53, 389
BspTNI GGTCTC 2 cut(s) 8, 308
BsrDI GCAATG 1 cut(s) 388
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 3 cut(s) 45, 394, 460
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 4 cut(s) 41, 209, 349, 419
BstDEI CTNAG 3 cut(s) 72, 399, 457
BstF5I GGATG 3 cut(s) 118, 353, 477
BstKTI GATC 3 cut(s) 48, 397, 463
BstMAI GTCTC 3 cut(s) 8, 215, 308
BstMBI GATC 3 cut(s) 45, 394, 460
BstMWI GCNNNNNNNGC 3 cut(s) 150, 198, 387
BstNI CCWGG 1 cut(s) 178
BstNSI RCATGY 1 cut(s) 343
BstSCI CCNGG 2 cut(s) 176, 363
BstSLI GKGCMC 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 162, 176, 544
BstV2I GAAGAC 2 cut(s) 239, 352
Bsu36I CCTNAGG 1 cut(s) 72
BsuRI GGCC 1 cut(s) 335
BtsCI GGATG 3 cut(s) 118, 353, 477
BtsIMutI CAGTG 2 cut(s) 90, 424
BveI ACCTGC 1 cut(s) 74
Cfr13I GGNCC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 156
CviAII CATG 4 cut(s) 25, 309, 340, 373
CviJI RGCY 9 cut(s) 7, 189, 295, 313, 335, 368, 390, 437, 535
CviKI_1 RGCY 9 cut(s) 7, 189, 295, 313, 335, 368, 390, 437, 535
CviQI GTAC 1 cut(s) 156
DdeI CTNAG 3 cut(s) 72, 399, 457
DpnI GATC 3 cut(s) 47, 396, 462
DpnII GATC 3 cut(s) 45, 394, 460
Eco31I GGTCTC 2 cut(s) 8, 308
Eco47I GGWCC 1 cut(s) 264
Eco81I CCTNAGG 1 cut(s) 72
EcoRII CCWGG 1 cut(s) 176
FaeI CATG 4 cut(s) 28, 312, 343, 376
FaiI YATR 5 cut(s) 26, 310, 341, 374, 528
FalI AAGNNNNNCTT 4 cut(s) 87, 119, 128, 160
FatI CATG 4 cut(s) 24, 308, 339, 372
Fnu4HI GCNGC 3 cut(s) 151, 190, 533
FokI GGATG 3 cut(s) 125, 340, 464
Fsp4HI GCNGC 3 cut(s) 151, 190, 533
FspBI CTAG 1 cut(s) 434
GluI GCNGC 3 cut(s) 151, 190, 533
HaeIII GGCC 1 cut(s) 335
HapII CCGG 1 cut(s) 364
Hin1II CATG 4 cut(s) 28, 312, 343, 376
HinfI GANTC 2 cut(s) 325, 443
HpaII CCGG 1 cut(s) 364
Hpy166II GTNNAC 2 cut(s) 88, 408
Hpy188I TCNGA 5 cut(s) 50, 330, 394, 451, 460
Hpy188III TCNNGA 2 cut(s) 124, 502
Hpy8I GTNNAC 2 cut(s) 88, 408
Hpy99I CGWCG 2 cut(s) 443, 451
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 4 cut(s) 41, 209, 349, 419
HpyCH4V TGCA 6 cut(s) 55, 277, 343, 408, 485, 532
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 198, 387
HpyF3I CTNAG 3 cut(s) 72, 399, 457
Hsp92II CATG 4 cut(s) 28, 312, 343, 376
Kzo9I GATC 3 cut(s) 45, 394, 460
LmnI GCTCC 2 cut(s) 197, 318
Lsp1109I GCAGC 3 cut(s) 162, 176, 544
LweI GCATC 1 cut(s) 486
MaeI CTAG 1 cut(s) 434
MaeIII GTNAC 4 cut(s) 20, 349, 419, 510
MalI GATC 3 cut(s) 47, 396, 462
MboI GATC 3 cut(s) 45, 394, 460
MboII GAAGA 4 cut(s) 148, 241, 244, 352
MhlI GDGCHC 1 cut(s) 410
MluCI AATT 2 cut(s) 139, 241
MmeI TCCRAC 2 cut(s) 111, 429
MnlI CCTC 5 cut(s) 67, 250, 408, 441, 478
MseI TTAA 1 cut(s) 222
MslI CAYNNNNRTG 1 cut(s) 272
MspA1I CMGCKG 1 cut(s) 295
MspI CCGG 1 cut(s) 364
MspR9I CCNGG 2 cut(s) 178, 365
Mva1269I GAATGC 1 cut(s) 432
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 3 cut(s) 150, 198, 387
NciI CCSGG 1 cut(s) 365
NdeII GATC 3 cut(s) 45, 394, 460
NlaIII CATG 4 cut(s) 28, 312, 343, 376
NlaIV GGNNCC 1 cut(s) 314
NmuCI GTSAC 3 cut(s) 20, 419, 510
NspI RCATGY 1 cut(s) 343
PctI GAATGC 1 cut(s) 432
PfeI GAWTC 2 cut(s) 325, 443
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 3 cut(s) 152, 191, 534
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 314
PspPI GGNCC 1 cut(s) 264
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PsyI GACNNNGTC 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 295
RsaI GTAC 1 cut(s) 157
RsaNI GTAC 1 cut(s) 156
RseI CAYNNNNRTG 1 cut(s) 272
SaqAI TTAA 1 cut(s) 222
SatI GCNGC 3 cut(s) 151, 190, 533
Sau3AI GATC 3 cut(s) 45, 394, 460
Sau96I GGNCC 1 cut(s) 264
ScrFI CCNGG 2 cut(s) 178, 365
SduI GDGCHC 1 cut(s) 410
SetI ASST 5 cut(s) 20, 68, 219, 297, 537
SfaNI GCATC 1 cut(s) 486
SinI GGWCC 1 cut(s) 264
SmiMI CAYNNNNRTG 1 cut(s) 272
SmlI CTYRAG 1 cut(s) 145
SmoI CTYRAG 1 cut(s) 145
Sse9I AATT 2 cut(s) 139, 241
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 2 cut(s) 176, 363
TaaI ACNGT 4 cut(s) 41, 209, 349, 419
TaqI TCGA 1 cut(s) 441
TasI AATT 2 cut(s) 139, 241
TfiI GAWTC 2 cut(s) 325, 443
Tru1I TTAA 1 cut(s) 222
Tru9I TTAA 1 cut(s) 222
TscAI CASTG 2 cut(s) 90, 424
TseFI GTSAC 3 cut(s) 20, 419, 510
TseI GCWGC 3 cut(s) 150, 189, 532
Tsp45I GTSAC 3 cut(s) 20, 419, 510
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 346, 438
TspRI CASTG 2 cut(s) 90, 424
Tth111I GACNNNGTC 1 cut(s) 26
VneI GTGCAC 1 cut(s) 406
VpaK11BI GGWCC 1 cut(s) 264
XceI RCATGY 1 cut(s) 343
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.