Rh7BG017100

GPI-anchored protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0012959
Physical Location & Seq
Forward (+)
1081492 .. 1083435
1944 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG017100.1

Sequence Viewer

Length: 1230 bp
ATGCATTTATATAGTATAGTTAAAGTTGGATCTAGCAAACAGCCAAACCAGCCCCAACCCTACCATCCTTTTTTCTCACTTGCATTTGCTCCCAACACTACCCACACCCCCCACCATCACTTTTGCTTCATTCATCACCCTCCTACACTCTCACTCACCCCCTTCTCCCTCACGCACATTGCAGAAAACCCAAAATCCAAACTCAACAAACCCACAATGTCCTCAAACCCACCACCACTCTTCACCTTCCTTTGCTTCCTCTTCACTTTGTTACCCTCCTCACTGGGTCTATCCGACCCGAAGCCGGCCTTAGTGCAGTCATTCCTTCCCAAATCTTCTCCCCCAGCTACAATCCCTGCATTCCCAGAGCAATCCGACATAGCCGGCTGCCCACTCCAGCTCCCTGATGAGCTCTTCCACGGCGTAAAGGCAGCCTGCTCGGCCAAAAAAGGCGACCCGACTGACCATTTACAGCACAGCCGCTGCTGCCCAGTGCTGGCGGCGTGGCTATACTCGGCCTACTCCGCCACTGCACTGGGCAGAAGCGGCCAAGTAGGCCCTGCAGTGGCAGGTCACGGTAATACTACTACTACCGCTTATGACCCGCCACTGCTGCCTGATGACTCAGAAACTTGTGTTCAGGACTTGGGAAAGGCACTGAATGCAAAAGGAATAGAGCTGATGAAGCCAAATGAGACCTGTGACATGGTCTATTGCTACTGTGGGATCAGATTGCACCCTTTGACCTGCCCTGAGGCATTTTCAGTGAACCAAAAAGGGAAACTTGTTGGGGATGAGAGTGTCAAGAAGTTGGAGAAGAATTGCTTGAGCAGCAGTACCAATGTCAATAAGTTCCCTGGTCTTGGTGGCTGCTCCAAATGCCTGAACAGTCTCTACCTTCTTAACAAGAAGAAGACTTCCAATTCAAGCAAAATGGAGGACAGGACCACCAAAATGCACAACAAAGATTGTCAGCTGATGGGTCTCACATGGCTCCTTGCCAAGAATCGGACGGCCTACATCCACACCGTTACATCCGTCTTCCGGGCTATCATGGTAAGCAATGACGGCTCTGATCCTCAGTCGTGCACTCTCAACAGTGACGGAATGCCTCTAGCCGTCGATTCGTCGGAAATCTCAGATCAATCCTCGTCCAGCATCCTTGCGGTTTCAATCACATTCTGCACAGTTTCACTTACTTTGTTGTATGTGCAGCTTACCCTGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

409

Amino Acids

44.28

Weight (kDa)

8.22

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012959)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G18050
fragaria_vesca FvH4_5g17140 FvH4_5g17140
malus_domestica MD06G1230000.v1.1 MD14G1234700.v1.1
prunus_persica Prupe.5G231000_v2.0.a1
pyrus_communis pycom06g20120 pycom14g19570
rosa_chinensis RchiOBHm_Chr7g0178651
rosa_laevigata RLG00000005426
rosa_multiflora Rmu_sc0002320.1_g000008
rosa_roxburghii Rroxscaffold_3G00274740
rosa_rugosa Rorug06G0418700
rosa_samantha Rh7AG017500 Rh7BG017100 Rh7CG017700 Rh7DG017700
rosa_wichuraiana Rw7G001420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 560, 755
AciI CCGC 7 cut(s) 481, 500, 525, 546, 594, 605, 1166
AclWI GGATC 3 cut(s) 37, 734, 1070
AcoI YGGCCR 2 cut(s) 441, 547
AfaI GTAC 1 cut(s) 838
AfiI CCNNNNNNNGG 6 cut(s) 304, 496, 565, 863, 1008, 1044
AgsI TTSAA 2 cut(s) 927, 1173
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 6 cut(s) 347, 400, 412, 679, 976, 1216
AluI AGCT 6 cut(s) 347, 400, 412, 679, 976, 1216
Alw21I GWGCWC 2 cut(s) 414, 1091
Alw26I GTCTC 3 cut(s) 689, 896, 989
Alw44I GTGCAC 1 cut(s) 1087
AlwI GGATC 3 cut(s) 37, 734, 1070
AlwNI CAGNNNCTG 1 cut(s) 483
AoxI GGCC 6 cut(s) 306, 441, 516, 547, 556, 1014
ApaLI GTGCAC 1 cut(s) 1087
ApeKI GCWGC 8 cut(s) 387, 431, 483, 486, 613, 831, 870, 1213
AspS9I GGNCC 2 cut(s) 557, 945
AsuC2I CCSGG 1 cut(s) 1046
AsuHPI GGTGA 3 cut(s) 128, 148, 235
AvaII GGWCC 1 cut(s) 945
AxyI CCTNAGG 1 cut(s) 753
BaeGI GKGCMC 1 cut(s) 1091
BanII GRGCYC 1 cut(s) 414
BbsI GAAGAC 2 cut(s) 920, 1033
Bbv12I GWGCWC 2 cut(s) 414, 1091
BbvI GCAGC 8 cut(s) 374, 443, 470, 473, 600, 843, 857, 1225
BccI CCATC 3 cut(s) 72, 123, 973
BceAI ACGGC 4 cut(s) 436, 1029, 1084, 1103
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BciT130I CCWGG 1 cut(s) 858
BcnI CCSGG 1 cut(s) 1046
BcoDI GTCTC 3 cut(s) 689, 896, 989
BfaI CTAG 2 cut(s) 33, 1115
BfmI CTRYAG 1 cut(s) 561
BfuAI ACCTGC 2 cut(s) 560, 755
BglI GCCNNNNNGGC 2 cut(s) 440, 555
Bme1390I CCNGG 2 cut(s) 858, 1046
Bme18I GGWCC 1 cut(s) 945
BmgT120I GGNCC 2 cut(s) 557, 945
BmiI GGNNCC 1 cut(s) 995
BmrFI CCNGG 2 cut(s) 858, 1046
BmrI ACTGGG 3 cut(s) 293, 485, 545
BmsI GCATC 1 cut(s) 1167
BmuI ACTGGG 3 cut(s) 293, 485, 545
BpiI GAAGAC 2 cut(s) 920, 1033
BpmI CTGGAG 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 847
BpuMI CCSGG 1 cut(s) 1046
BsaI GGTCTC 2 cut(s) 689, 989
BsaJI CCNNGG 2 cut(s) 418, 856
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 6 cut(s) 304, 496, 565, 863, 1008, 1044
Bse118I RCCGGY 2 cut(s) 304, 383
Bse1I ACTGG 3 cut(s) 288, 491, 540
Bse21I CCTNAGG 1 cut(s) 753
Bse3DI GCAATG 2 cut(s) 177, 1069
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 2 cut(s) 418, 856
BseGI GGATG 5 cut(s) 64, 799, 1020, 1034, 1158
BseLI CCNNNNNNNGG 6 cut(s) 304, 496, 565, 863, 1008, 1044
BseMI GCAATG 2 cut(s) 177, 1069
BseMII CTCAG 4 cut(s) 639, 744, 1094, 1152
BseNI ACTGG 3 cut(s) 288, 491, 540
BseRI GAGGAG 1 cut(s) 268
BseSI GKGCMC 1 cut(s) 1091
BseXI GCAGC 8 cut(s) 374, 443, 470, 473, 600, 843, 857, 1225
BseYI CCCAGC 1 cut(s) 343
BsgI GTGCAG 3 cut(s) 335, 516, 1168
BshFI GGCC 6 cut(s) 308, 443, 518, 549, 558, 1016
BsiHKAI GWGCWC 2 cut(s) 414, 1091
BsiSI CCGG 3 cut(s) 305, 384, 1045
BslI CCNNNNNNNGG 6 cut(s) 304, 496, 565, 863, 1008, 1044
BsmAI GTCTC 3 cut(s) 689, 896, 989
BsmI GAATGC 3 cut(s) 359, 667, 1113
BsnI GGCC 6 cut(s) 308, 443, 518, 549, 558, 1016
Bso31I GGTCTC 2 cut(s) 689, 989
Bsp1286I GDGCHC 2 cut(s) 414, 1091
Bsp143I GATC 4 cut(s) 29, 726, 1075, 1141
BspACI CCGC 7 cut(s) 481, 500, 525, 546, 594, 605, 1166
BspANI GGCC 6 cut(s) 308, 443, 518, 549, 558, 1016
BspCNI CTCAG 4 cut(s) 638, 745, 1093, 1151
BspLI GGNNCC 1 cut(s) 995
BspMAI CTGCAG 1 cut(s) 565
BspMI ACCTGC 2 cut(s) 560, 755
BspPI GGATC 3 cut(s) 37, 734, 1070
BspQI GCTCTTC 1 cut(s) 419
BspTNI GGTCTC 2 cut(s) 689, 989
BsrDI GCAATG 2 cut(s) 177, 1069
BsrFI RCCGGY 2 cut(s) 304, 383
BsrI ACTGG 3 cut(s) 288, 491, 540
BssAI RCCGGY 2 cut(s) 304, 383
BssECI CCNNGG 2 cut(s) 418, 856
BssMI GATC 4 cut(s) 29, 726, 1075, 1141
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 6 cut(s) 578, 722, 890, 1030, 1100, 1189
Bst6I CTCTTC 3 cut(s) 245, 266, 419
BstAPI GCANNNNNTGC 1 cut(s) 662
BstC8I GCNNGC 4 cut(s) 306, 385, 436, 498
BstDEI CTNAG 5 cut(s) 310, 625, 753, 1080, 1138
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 5 cut(s) 64, 799, 1020, 1034, 1158
BstKTI GATC 4 cut(s) 32, 729, 1078, 1144
BstMAI GTCTC 3 cut(s) 689, 896, 989
BstMBI GATC 4 cut(s) 29, 726, 1075, 1141
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 2 cut(s) 856, 1044
BstSFI CTRYAG 1 cut(s) 561
BstSLI GKGCMC 1 cut(s) 1091
BstV1I GCAGC 8 cut(s) 374, 443, 470, 473, 600, 843, 857, 1225
BstV2I GAAGAC 2 cut(s) 920, 1033
BstX2I RGATCY 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 1 cut(s) 29
Bsu36I CCTNAGG 1 cut(s) 753
BsuRI GGCC 6 cut(s) 308, 443, 518, 549, 558, 1016
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 5 cut(s) 64, 799, 1020, 1034, 1158
BtsI GCAGTG 3 cut(s) 528, 570, 608
BtsIMutI CAGTG 9 cut(s) 281, 498, 528, 533, 570, 608, 656, 771, 1105
BveI ACCTGC 2 cut(s) 560, 755
Cac8I GCNNGC 4 cut(s) 306, 385, 436, 498
CaiI CAGNNNCTG 1 cut(s) 483
Cfr10I RCCGGY 2 cut(s) 304, 383
Cfr13I GGNCC 2 cut(s) 557, 945
Csp6I GTAC 1 cut(s) 837
CviAII CATG 3 cut(s) 706, 990, 1054
CviQI GTAC 1 cut(s) 837
DdeI CTNAG 5 cut(s) 310, 625, 753, 1080, 1138
DpnI GATC 4 cut(s) 31, 728, 1077, 1143
DpnII GATC 4 cut(s) 29, 726, 1075, 1141
EaeI YGGCCR 2 cut(s) 441, 547
Eam1104I CTCTTC 3 cut(s) 245, 266, 419
EarI CTCTTC 3 cut(s) 245, 266, 419
EciI GGCGGA 1 cut(s) 514
Ecl136II GAGCTC 1 cut(s) 412
Eco24I GRGCYC 1 cut(s) 414
Eco31I GGTCTC 2 cut(s) 689, 989
Eco47I GGWCC 1 cut(s) 945
Eco53kI GAGCTC 1 cut(s) 412
Eco81I CCTNAGG 1 cut(s) 753
EcoICRI GAGCTC 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 557
EcoRII CCWGG 1 cut(s) 856
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 414
FaeI CATG 3 cut(s) 709, 993, 1057
FalI AAGNNNNNCTT 6 cut(s) 293, 325, 768, 800, 809, 841
FatI CATG 3 cut(s) 705, 989, 1053
FauI CCCGC 1 cut(s) 612
FokI GGATG 5 cut(s) 51, 806, 1007, 1021, 1145
FriOI GRGCYC 1 cut(s) 414
FspBI CTAG 2 cut(s) 33, 1115
GsaI CCCAGC 1 cut(s) 347
GsuI CTGGAG 1 cut(s) 380
HaeIII GGCC 6 cut(s) 308, 443, 518, 549, 558, 1016
HapII CCGG 3 cut(s) 305, 384, 1045
Hin1II CATG 3 cut(s) 709, 993, 1057
HinfI GANTC 3 cut(s) 623, 1006, 1124
HpaII CCGG 3 cut(s) 305, 384, 1045
HphI GGTGA 3 cut(s) 128, 148, 235
Hpy166II GTNNAC 2 cut(s) 769, 1089
Hpy188I TCNGA 8 cut(s) 295, 376, 628, 731, 1011, 1075, 1132, 1141
Hpy188III TCNNGA 2 cut(s) 641, 805
Hpy8I GTNNAC 2 cut(s) 769, 1089
Hpy99I CGWCG 2 cut(s) 1124, 1132
HpyAV CCTTC 4 cut(s) 172, 256, 335, 908
HpyCH4III ACNGT 6 cut(s) 578, 722, 890, 1030, 1100, 1189
HpyF3I CTNAG 5 cut(s) 310, 625, 753, 1080, 1138
Hsp92II CATG 3 cut(s) 709, 993, 1057
KroI GCCGGC 2 cut(s) 304, 383
KroNI GCCGGC 2 cut(s) 306, 385
Kzo9I GATC 4 cut(s) 29, 726, 1075, 1141
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 4 cut(s) 94, 405, 878, 999
Lsp1109I GCAGC 8 cut(s) 374, 443, 470, 473, 600, 843, 857, 1225
LweI GCATC 1 cut(s) 1167
MaeI CTAG 2 cut(s) 33, 1115
MaeIII GTNAC 5 cut(s) 270, 572, 701, 1030, 1100
MalI GATC 4 cut(s) 31, 728, 1077, 1143
MboI GATC 4 cut(s) 29, 726, 1075, 1141
MboII GAAGA 8 cut(s) 232, 253, 327, 406, 829, 922, 925, 1033
MflI RGATCY 1 cut(s) 29
MhlI GDGCHC 2 cut(s) 414, 1091
MluCI AATT 2 cut(s) 820, 922
MlyI GAGTC 1 cut(s) 617
MmeI TCCRAC 5 cut(s) 7, 318, 399, 792, 1110
Mph1103I ATGCAT 1 cut(s) 6
MroNI GCCGGC 2 cut(s) 304, 383
MseI TTAA 2 cut(s) 21, 903
MslI CAYNNNNRTG 1 cut(s) 953
MspA1I CMGCKG 2 cut(s) 483, 976
MspI CCGG 3 cut(s) 305, 384, 1045
MspR9I CCNGG 2 cut(s) 858, 1046
Mva1269I GAATGC 3 cut(s) 359, 667, 1113
MvaI CCWGG 1 cut(s) 858
NaeI GCCGGC 2 cut(s) 306, 385
NciI CCSGG 1 cut(s) 1046
NdeII GATC 4 cut(s) 29, 726, 1075, 1141
NgoMIV GCCGGC 2 cut(s) 304, 383
NlaIII CATG 3 cut(s) 709, 993, 1057
NlaIV GGNNCC 1 cut(s) 995
NmeAIII GCCGAG 2 cut(s) 419, 494
NmuCI GTSAC 3 cut(s) 572, 701, 1100
NsiI ATGCAT 1 cut(s) 6
PciSI GCTCTTC 1 cut(s) 419
PctI GAATGC 3 cut(s) 359, 667, 1113
PdiI GCCGGC 2 cut(s) 306, 385
PfeI GAWTC 2 cut(s) 1006, 1124
PflFI GACNNNGTC 1 cut(s) 707
PleI GAGTC 1 cut(s) 617
PpsI GAGTC 1 cut(s) 617
Psp124BI GAGCTC 1 cut(s) 414
Psp6I CCWGG 1 cut(s) 856
PspFI CCCAGC 1 cut(s) 343
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 1 cut(s) 995
PspPI GGNCC 2 cut(s) 557, 945
PsrI GAACNNNNNNTAC 2 cut(s) 878, 910
PstI CTGCAG 1 cut(s) 565
PstNI CAGNNNCTG 1 cut(s) 483
PsuI RGATCY 1 cut(s) 29
PsyI GACNNNGTC 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 976
RsaI GTAC 1 cut(s) 838
RsaNI GTAC 1 cut(s) 837
RseI CAYNNNNRTG 1 cut(s) 953
SacI GAGCTC 1 cut(s) 414
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 21, 903
Sau3AI GATC 4 cut(s) 29, 726, 1075, 1141
Sau96I GGNCC 2 cut(s) 557, 945
SchI GAGTC 1 cut(s) 617
ScrFI CCNGG 2 cut(s) 858, 1046
SduI GDGCHC 2 cut(s) 414, 1091
SfaNI GCATC 1 cut(s) 1167
SfcI CTRYAG 1 cut(s) 561
SfiI GGCCNNNNNGGCC 1 cut(s) 555
SinI GGWCC 1 cut(s) 945
SmiMI CAYNNNNRTG 1 cut(s) 953
SmlI CTYRAG 1 cut(s) 826
SmoI CTYRAG 1 cut(s) 826
Sse9I AATT 2 cut(s) 820, 922
SsiI CCGC 7 cut(s) 481, 500, 525, 546, 594, 605, 1166
SspMI CTAG 2 cut(s) 33, 1115
SstI GAGCTC 1 cut(s) 414
StyD4I CCNGG 2 cut(s) 856, 1044
TaaI ACNGT 6 cut(s) 578, 722, 890, 1030, 1100, 1189
TaqI TCGA 1 cut(s) 1122
TasI AATT 2 cut(s) 820, 922
TauI GCSGC 3 cut(s) 483, 503, 549
TfiI GAWTC 2 cut(s) 1006, 1124
Tru1I TTAA 2 cut(s) 21, 903
Tru9I TTAA 2 cut(s) 21, 903
TscAI CASTG 9 cut(s) 288, 498, 535, 540, 570, 615, 663, 771, 1105
TseFI GTSAC 3 cut(s) 572, 701, 1100
TseI GCWGC 8 cut(s) 387, 431, 483, 486, 613, 831, 870, 1213
Tsp45I GTSAC 3 cut(s) 572, 701, 1100
TspDTI ATGAA 3 cut(s) 118, 122, 698
TspGWI ACGGA 2 cut(s) 1027, 1119
TspRI CASTG 9 cut(s) 288, 498, 535, 540, 570, 615, 663, 771, 1105
Tth111I GACNNNGTC 1 cut(s) 707
VneI GTGCAC 1 cut(s) 1087
VpaK11BI GGWCC 1 cut(s) 945
XspI CTAG 2 cut(s) 33, 1115
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.