Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014642

Physical Location & Seq

Genomic Coordinates Reverse (-)

19741816 .. 19743916

Gene Structure 2101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G189700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAACAAAAAACACTCCTACCAGCTCTTTTATGCGTCATCTTCTTCAACCTCCTCTGCTTCACCATAGCCCAAAAACCTCCTGCATGCCAAACCACATGTGGTTCCCTTAAACTCAAATATCCCTTTGGCACAGGCGCTGGCTGTGGCTCCCCAACTTTCCAACCCTACATAGCCTGCGAAATTACCAACAAGGACCAAAAGCAGCAGCAGCAGCTCCTCCTCACCACCCACACAGCCTCATACCCAATCACTTCCATTTCCTACTCCACCCAAACCCTAACCCTAACCCCGCCCTCCATGTCCTCCTGCTCCTCCATGCAACCGTCCCCATCCAACTTCGGCCTCGACTGGGCCAGCCCTTTTCAGCTCGGCCGATCAACTTTCATCCTCTTGTCCTGCCCACCCCCCACCTCTTCTCTCACCCTCGGAGGCTCCTCCGGCATCCCGGTCTGTGATCCTTCCTACTCTAACCTCTGTGCTTCTATCTACACGTGCCCTTCTGTGGTTGGTCTTGGCCTTCCTTTGTTCCCCCCTACCAACACTTGCTGTGTGTATTCACCCGGCAATCTTGATAGCAAGGGTGAGCTGGACCTCTGCGGGCTGAAGTGCGCCGGGTATACCTCCGTGGTGTCCCTTGGAGACTACCCGACGGACCCCTCCCGGTGGGAGTATGGGGTGGCGTTAAAGTATAGCCATGGTGATTTGGATAGTGGCATTGTGGACACCAAGTGCAAGAGCTGTGAGATGAGTGATGGGGTTTGTGGGTATAGTGTTGATGATCATTCGTTTCTCTGCGGGTGTAAGAATGGCTACAACACCTCCTCGGATTGCAACAATAATTTCAGTCCAGATCAGGAACTGTTTTGGGGCTCTGCCTCTAATTTACTACCTGCTTGGAAAATGTGGTTTGCGCTCGTGGTTTTTTGGGAAATCTCCTACTCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind WAK_assoc

Protein Analysis

317

Amino Acids

34.06

Weight (kDa)

4.83

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014642)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20600
malus_domestica	MD01G1032500.v1.1 MD15G1322500.v1.1
prunus_persica	Prupe.6G189700_v2.0.a1
pyrus_communis	pycom01g05980 pycom15g28310
rosa_chinensis	RchiOBHm_Chr2g0113031
rosa_laevigata	RLG00000018031
rosa_multiflora	Rmu_sc0002351.1_g000105 Rmu_sc0024545.1_g000002
rosa_roxburghii	Rroxscaffold_2G00130930
rosa_rugosa	Rorug02G0183300
rosa_samantha	Rh2AG238500 Rh2BG252300 Rh2CG242500 Rh2DG246500
rosa_wichuraiana	Rw2G018700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	901
AccI	GTMKAC	1 cut(s)	620
AciI	CCGC	3 cut(s)	293, 600, 798
AclWI	GGATC	1 cut(s)	452
AcoI	YGGCCR	1 cut(s)	373
AcuI	CTGAAG	1 cut(s)	626
AcvI	CACGTG	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	732
AfiI	CCNNNNNNNGG	3 cut(s)	352, 505, 666
AflIII	ACRYGT	2 cut(s)	98, 492
AgsI	TTSAA	1 cut(s)	49
AluBI	AGCT	5 cut(s)	26, 217, 370, 589, 741
AluI	AGCT	5 cut(s)	26, 217, 370, 589, 741
Alw26I	GTCTC	1 cut(s)	636
AlwI	GGATC	1 cut(s)	452
AlwNI	CAGNNNCTG	2 cut(s)	140, 862
AoxI	GGCC	4 cut(s)	343, 354, 373, 517
ApeKI	GCWGC	4 cut(s)	205, 208, 211, 214
AspLEI	GCGC	3 cut(s)	140, 614, 916
AspS9I	GGNCC	4 cut(s)	196, 354, 592, 655
AsuC2I	CCSGG	4 cut(s)	449, 564, 616, 664
AsuHPI	GGTGA	6 cut(s)	55, 217, 415, 552, 596, 713
AvaII	GGWCC	3 cut(s)	196, 592, 655
BaeGI	GKGCMC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	875
BauI	CACGAG	1 cut(s)	917
BbrPI	CACGTG	1 cut(s)	495
BbvI	GCAGC	4 cut(s)	217, 220, 223, 226
BccI	CCATC	2 cut(s)	340, 749
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	4 cut(s)	449, 564, 616, 664
BcoDI	GTCTC	1 cut(s)	636
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	901
BisI	GCNGC	4 cut(s)	206, 209, 212, 215
BlsI	GCNGC	4 cut(s)	207, 210, 213, 216
Bme1390I	CCNGG	4 cut(s)	449, 564, 616, 664
Bme18I	GGWCC	3 cut(s)	196, 592, 655
BmgT120I	GGNCC	4 cut(s)	196, 354, 592, 655
BmiI	GGNNCC	4 cut(s)	106, 151, 436, 657
BmrFI	CCNGG	4 cut(s)	449, 564, 616, 664
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	453
BmuI	ACTGGG	1 cut(s)	361
BpuMI	CCSGG	4 cut(s)	449, 564, 616, 664
BsaAI	YACGTR	1 cut(s)	495
BsaJI	CCNNGG	5 cut(s)	427, 627, 637, 697, 825
BsaXI	ACNNNNNCTCC	2 cut(s)	806, 836
Bsc4I	CCNNNNNNNGG	3 cut(s)	352, 505, 666
Bse1I	ACTGG	1 cut(s)	356
BseDI	CCNNGG	5 cut(s)	427, 627, 637, 697, 825
BseGI	GGATG	3 cut(s)	332, 387, 444
BseLI	CCNNNNNNNGG	3 cut(s)	352, 505, 666
BseNI	ACTGG	1 cut(s)	356
BseRI	GAGGAG	6 cut(s)	44, 209, 212, 304, 427, 814
BseSI	GKGCMC	1 cut(s)	500
BseX3I	CGGCCG	1 cut(s)	373
BseXI	GCAGC	4 cut(s)	217, 220, 223, 226
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	4 cut(s)	345, 356, 375, 519
BsiEI	CGRYCG	1 cut(s)	376
BsiSI	CCGG	5 cut(s)	441, 449, 564, 615, 664
BslFI	GGGAC	2 cut(s)	313, 619
BslI	CCNNNNNNNGG	3 cut(s)	352, 505, 666
BsmAI	GTCTC	1 cut(s)	636
BsmFI	GGGAC	2 cut(s)	313, 619
BsnI	GGCC	4 cut(s)	345, 356, 375, 519
Bsp1286I	GDGCHC	2 cut(s)	500, 875
Bsp143I	GATC	4 cut(s)	377, 457, 781, 853
Bsp19I	CCATGG	1 cut(s)	697
BspACI	CCGC	3 cut(s)	293, 600, 798
BspANI	GGCC	4 cut(s)	345, 356, 375, 519
BspLI	GGNNCC	4 cut(s)	106, 151, 436, 657
BspMI	ACCTGC	1 cut(s)	901
BspPI	GGATC	1 cut(s)	452
BsrI	ACTGG	1 cut(s)	356
BssECI	CCNNGG	5 cut(s)	427, 627, 637, 697, 825
BssMI	GATC	4 cut(s)	377, 457, 781, 853
BssNAI	GTATAC	1 cut(s)	621
BssSI	CACGAG	1 cut(s)	917
BssT1I	CCWWGG	2 cut(s)	637, 697
Bst1107I	GTATAC	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	917
Bst4CI	ACNGT	2 cut(s)	327, 864
Bst6I	CTCTTC	1 cut(s)	421
BstBAI	YACGTR	1 cut(s)	495
BstC8I	GCNNGC	5 cut(s)	88, 142, 178, 358, 602
BstDSI	CCRYGG	2 cut(s)	627, 697
BstF5I	GGATG	3 cut(s)	332, 387, 444
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	3 cut(s)	140, 614, 916
BstKTI	GATC	4 cut(s)	380, 460, 784, 856
BstMAI	GTCTC	1 cut(s)	636
BstMBI	GATC	4 cut(s)	377, 457, 781, 853
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	211, 214, 441
BstNSI	RCATGY	2 cut(s)	90, 102
BstSCI	CCNGG	4 cut(s)	447, 562, 614, 662
BstSLI	GKGCMC	1 cut(s)	500
BstV1I	GCAGC	4 cut(s)	217, 220, 223, 226
BstZ17I	GTATAC	1 cut(s)	621
BstZI	CGGCCG	1 cut(s)	373
BsuRI	GGCC	4 cut(s)	345, 356, 375, 519
BtgI	CCRYGG	2 cut(s)	627, 697
BtsCI	GGATG	3 cut(s)	332, 387, 444
BveI	ACCTGC	1 cut(s)	901
Cac8I	GCNNGC	5 cut(s)	88, 142, 178, 358, 602
CaiI	CAGNNNCTG	2 cut(s)	140, 862
CfoI	GCGC	3 cut(s)	140, 614, 916
Cfr13I	GGNCC	4 cut(s)	196, 354, 592, 655
CseI	GACGC	1 cut(s)	25
CviAII	CATG	5 cut(s)	87, 99, 301, 319, 698
DpnI	GATC	4 cut(s)	379, 459, 783, 855
DpnII	GATC	4 cut(s)	377, 457, 781, 853
DraIII	CACNNNGTG	1 cut(s)	732
EaeI	YGGCCR	1 cut(s)	373
EagI	CGGCCG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	421
EarI	CTCTTC	1 cut(s)	421
EclXI	CGGCCG	1 cut(s)	373
Eco130I	CCWWGG	2 cut(s)	637, 697
Eco24I	GRGCYC	1 cut(s)	875
Eco47I	GGWCC	3 cut(s)	196, 592, 655
Eco52I	CGGCCG	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	626
Eco72I	CACGTG	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	637, 697
EcoT38I	GRGCYC	1 cut(s)	875
ErhI	CCWWGG	2 cut(s)	637, 697
FaeI	CATG	5 cut(s)	90, 102, 304, 322, 701
FaqI	GGGAC	2 cut(s)	313, 619
FatI	CATG	5 cut(s)	86, 98, 300, 318, 697
FauI	CCCGC	3 cut(s)	300, 593, 791
FbaI	TGATCA	1 cut(s)	781
FblI	GTMKAC	1 cut(s)	620
Fnu4HI	GCNGC	4 cut(s)	206, 209, 212, 215
FokI	GGATG	3 cut(s)	319, 374, 431
FriOI	GRGCYC	1 cut(s)	875
Fsp4HI	GCNGC	4 cut(s)	206, 209, 212, 215
GlaI	GCGC	3 cut(s)	139, 613, 915
GluI	GCNGC	4 cut(s)	206, 209, 212, 215
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	4 cut(s)	345, 356, 375, 519
HapII	CCGG	5 cut(s)	441, 449, 564, 615, 664
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	3 cut(s)	140, 614, 916
Hin1II	CATG	5 cut(s)	90, 102, 304, 322, 701
Hin6I	GCGC	3 cut(s)	138, 612, 914
HinP1I	GCGC	3 cut(s)	138, 612, 914
HpaII	CCGG	5 cut(s)	441, 449, 564, 615, 664
HphI	GGTGA	6 cut(s)	55, 217, 415, 552, 596, 713
Hpy166II	GTNNAC	2 cut(s)	621, 724
Hpy188I	TCNGA	2 cut(s)	431, 829
Hpy188III	TCNNGA	3 cut(s)	572, 851, 857
Hpy8I	GTNNAC	2 cut(s)	621, 724
Hpy99I	CGWCG	1 cut(s)	655
HpyAV	CCTTC	3 cut(s)	471, 510, 530
HpyCH4III	ACNGT	2 cut(s)	327, 864
HpyCH4IV	ACGT	1 cut(s)	494
HpyCH4V	TGCA	4 cut(s)	86, 322, 735, 834
HpyF10VI	GCNNNNNNNGC	3 cut(s)	211, 214, 441
HpySE526I	ACGT	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	90, 102, 304, 322, 701
HspAI	GCGC	3 cut(s)	138, 612, 914
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	4 cut(s)	377, 457, 781, 853
LmnI	GCTCC	4 cut(s)	155, 222, 317, 440
Lsp1109I	GCAGC	4 cut(s)	217, 220, 223, 226
LweI	GCATC	1 cut(s)	453
MaeII	ACGT	1 cut(s)	494
MalI	GATC	4 cut(s)	379, 459, 783, 855
MboI	GATC	4 cut(s)	377, 457, 781, 853
MboII	GAAGA	3 cut(s)	34, 37, 408
MhlI	GDGCHC	2 cut(s)	500, 875
MluCI	AATT	3 cut(s)	183, 841, 883
MmeI	TCCRAC	2 cut(s)	187, 360
MseI	TTAA	2 cut(s)	111, 686
MspI	CCGG	5 cut(s)	441, 449, 564, 615, 664
MspR9I	CCNGG	4 cut(s)	449, 564, 616, 664
MwoI	GCNNNNNNNGC	3 cut(s)	211, 214, 441
NciI	CCSGG	4 cut(s)	449, 564, 616, 664
NcoI	CCATGG	1 cut(s)	697
NdeII	GATC	4 cut(s)	377, 457, 781, 853
NlaIII	CATG	5 cut(s)	90, 102, 304, 322, 701
NlaIV	GGNNCC	4 cut(s)	106, 151, 436, 657
NmeAIII	GCCGAG	1 cut(s)	351
NspI	RCATGY	2 cut(s)	90, 102
PaeI	GCATGC	1 cut(s)	90
PciI	ACATGT	1 cut(s)	98
PkrI	GCNGC	4 cut(s)	207, 210, 213, 216
PmaCI	CACGTG	1 cut(s)	495
PmlI	CACGTG	1 cut(s)	495
Ppu21I	YACGTR	1 cut(s)	495
PscI	ACATGT	1 cut(s)	98
PspCI	CACGTG	1 cut(s)	495
PspN4I	GGNNCC	4 cut(s)	106, 151, 436, 657
PspPI	GGNCC	4 cut(s)	196, 354, 592, 655
PstNI	CAGNNNCTG	2 cut(s)	140, 862
SaqAI	TTAA	2 cut(s)	111, 686
SatI	GCNGC	4 cut(s)	206, 209, 212, 215
Sau3AI	GATC	4 cut(s)	377, 457, 781, 853
Sau96I	GGNCC	4 cut(s)	196, 354, 592, 655
ScrFI	CCNGG	4 cut(s)	449, 564, 616, 664
SduI	GDGCHC	2 cut(s)	500, 875
SfaNI	GCATC	1 cut(s)	453
SinI	GGWCC	3 cut(s)	196, 592, 655
SphI	GCATGC	1 cut(s)	90
Sse9I	AATT	3 cut(s)	183, 841, 883
SsiI	CCGC	3 cut(s)	293, 600, 798
StyD4I	CCNGG	4 cut(s)	447, 562, 614, 662
StyI	CCWWGG	2 cut(s)	637, 697
TaaI	ACNGT	2 cut(s)	327, 864
TaiI	ACGT	1 cut(s)	497
TaqI	TCGA	1 cut(s)	348
TasI	AATT	3 cut(s)	183, 841, 883
Tru1I	TTAA	2 cut(s)	111, 686
Tru9I	TTAA	2 cut(s)	111, 686
TseI	GCWGC	4 cut(s)	205, 208, 211, 214
TspDTI	ATGAA	1 cut(s)	376
TspGWI	ACGGA	2 cut(s)	616, 668
VpaK11BI	GGWCC	3 cut(s)	196, 592, 655
XceI	RCATGY	2 cut(s)	90, 102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.