Rmu_sc0002351.1_g000105

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002351.1
OG0014642
Physical Location & Seq
Forward (+)
420466 .. 421089
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002351.1_g000105.1.cds

Sequence Viewer

Length: 624 bp
atggaaccacagcgagcatcattagctctttcactcatcatcttcaacctcctcctcaccaccacaacccaatacccttcatgccaatccacctgcggctccctccaccttagctaccccttcggctccggccccggctgcggctccccaaccttccaaccctacataacttgcagaacaaccaccaagcagctccttctgaccactcacaccggatcataccccatcacctccatctcctactccaccaacaccctaaccctaacaccaccctccatgtccacctgcacctccatgcaaccctgcccctccaacctgggtctcgactggaccagcccgttccagctcggcccatcaactttcatcctcctctcctgccaaccccctacctcctctctccccctcaaagactcctcctccccagtctgcgacccctcctactcccacctctgcgcggccatctacacgtgtccctccgttacgggcagaactatttatgtccgtgtcttagacttgcaacgtgattttcttttttggagaataaagctaactttaattgtgttaccaaaaaagacgttacttaacccttcaggtcgaaattgcaagacgcacacagtaatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

207

Amino Acids

22.58

Weight (kDa)

8.91

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014642)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20600
malus_domestica MD01G1032500.v1.1 MD15G1322500.v1.1
prunus_persica Prupe.6G189700_v2.0.a1
pyrus_communis pycom01g05980 pycom15g28310
rosa_chinensis RchiOBHm_Chr2g0113031
rosa_laevigata RLG00000018031
rosa_multiflora Rmu_sc0002351.1_g000105 Rmu_sc0024545.1_g000002
rosa_roxburghii Rroxscaffold_2G00130930
rosa_rugosa Rorug02G0183300
rosa_samantha Rh2AG238500 Rh2BG252300 Rh2CG242500 Rh2DG246500
rosa_wichuraiana Rw2G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 101, 293
Acc36I ACCTGC 2 cut(s) 101, 293
AccII CGCG 1 cut(s) 455
AciI CCGC 3 cut(s) 96, 141, 455
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 456
AcuI CTGAAG 1 cut(s) 573
AcvI CACGTG 1 cut(s) 468
AfiI CCNNNNNNNGG 2 cut(s) 140, 454
AflIII ACRYGT 2 cut(s) 465, 467
AgsI TTSAA 1 cut(s) 46
AjnI CCWGG 1 cut(s) 315
AluBI AGCT 5 cut(s) 26, 114, 193, 346, 547
AluI AGCT 5 cut(s) 26, 114, 193, 346, 547
Alw26I GTCTC 1 cut(s) 326
AlwI GGATC 1 cut(s) 223
AoxI GGCC 3 cut(s) 130, 349, 456
ApeKI GCWGC 2 cut(s) 138, 190
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 3 cut(s) 131, 330, 350
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 2 cut(s) 49, 220
AvaII GGWCC 1 cut(s) 330
BbrPI CACGTG 1 cut(s) 468
BbvI GCAGC 2 cut(s) 125, 202
BccI CCATC 4 cut(s) 233, 242, 361, 467
BciT130I CCWGG 1 cut(s) 317
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 326
BfuAI ACCTGC 2 cut(s) 101, 293
BisI GCNGC 5 cut(s) 97, 139, 142, 191, 456
BlsI GCNGC 5 cut(s) 98, 140, 143, 192, 457
Bme1390I CCNGG 2 cut(s) 135, 317
Bme18I GGWCC 1 cut(s) 330
BmgT120I GGNCC 3 cut(s) 131, 330, 350
BmiI GGNNCC 5 cut(s) 6, 100, 127, 133, 145
BmrFI CCNGG 2 cut(s) 135, 317
BmrI ACTGGG 1 cut(s) 416
BmsI GCATC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 416
Bpu10I CCTNAGC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 468
BsaI GGTCTC 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 133, 316
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 454
Bse1I ACTGG 2 cut(s) 332, 422
BseBI CCWGG 1 cut(s) 317
BseDI CCNNGG 2 cut(s) 133, 316
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 2 cut(s) 140, 454
BseNI ACTGG 2 cut(s) 332, 422
BseRI GAGGAG 6 cut(s) 41, 44, 359, 382, 403, 406
BseXI GCAGC 2 cut(s) 125, 202
BsgI GTGCAG 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 455
BshFI GGCC 3 cut(s) 132, 351, 458
BsiSI CCGG 3 cut(s) 129, 135, 213
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 2 cut(s) 140, 454
BsmAI GTCTC 1 cut(s) 326
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 3 cut(s) 132, 351, 458
Bso31I GGTCTC 1 cut(s) 326
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 3 cut(s) 96, 141, 455
BspANI GGCC 3 cut(s) 132, 351, 458
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 5 cut(s) 6, 100, 127, 133, 145
BspMI ACCTGC 2 cut(s) 101, 293
BspPI GGATC 1 cut(s) 223
BspTNI GGTCTC 1 cut(s) 326
BsrI ACTGG 2 cut(s) 332, 422
BssECI CCNNGG 2 cut(s) 133, 316
BssMI GATC 1 cut(s) 215
Bst2UI CCWGG 1 cut(s) 317
Bst4CI ACNGT 1 cut(s) 616
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 1 cut(s) 15
BstDEI CTNAG 2 cut(s) 110, 508
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 1 cut(s) 218
BstMAI GTCTC 1 cut(s) 326
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 23, 138
BstNI CCWGG 1 cut(s) 317
BstSCI CCNGG 2 cut(s) 133, 315
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 2 cut(s) 125, 202
BsuRI GGCC 3 cut(s) 132, 351, 458
BtsCI GGATG 1 cut(s) 363
BveI ACCTGC 2 cut(s) 101, 293
Cac8I GCNNGC 1 cut(s) 15
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 3 cut(s) 131, 330, 350
CseI GACGC 1 cut(s) 616
CviAII CATG 3 cut(s) 81, 277, 295
DdeI CTNAG 2 cut(s) 110, 508
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 456
Eco31I GGTCTC 1 cut(s) 326
Eco47I GGWCC 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 573
Eco72I CACGTG 1 cut(s) 468
EcoRII CCWGG 1 cut(s) 315
FaeI CATG 3 cut(s) 84, 280, 298
FaiI YATR 6 cut(s) 82, 167, 220, 278, 296, 498
FaqI GGGAC 1 cut(s) 456
FatI CATG 3 cut(s) 80, 276, 294
Fnu4HI GCNGC 5 cut(s) 97, 139, 142, 191, 456
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 5 cut(s) 97, 139, 142, 191, 456
GlaI GCGC 1 cut(s) 454
GluI GCNGC 5 cut(s) 97, 139, 142, 191, 456
HaeIII GGCC 3 cut(s) 132, 351, 458
HapII CCGG 3 cut(s) 129, 135, 213
HgaI GACGC 1 cut(s) 616
HhaI GCGC 1 cut(s) 455
Hin1II CATG 3 cut(s) 84, 280, 298
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HinfI GANTC 1 cut(s) 410
HpaII CCGG 3 cut(s) 129, 135, 213
HphI GGTGA 2 cut(s) 49, 220
Hpy166II GTNNAC 1 cut(s) 282
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 1 cut(s) 323
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 5 cut(s) 87, 130, 163, 206, 597
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 3 cut(s) 467, 520, 575
HpyCH4V TGCA 5 cut(s) 174, 288, 298, 517, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 138
HpyF3I CTNAG 2 cut(s) 110, 508
HpySE526I ACGT 3 cut(s) 467, 520, 575
Hsp92II CATG 3 cut(s) 84, 280, 298
HspAI GCGC 1 cut(s) 453
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 4 cut(s) 104, 131, 149, 198
Lsp1109I GCAGC 2 cut(s) 125, 202
LweI GCATC 1 cut(s) 26
MaeII ACGT 3 cut(s) 467, 520, 575
MaeIII GTNAC 3 cut(s) 478, 561, 576
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 1 cut(s) 34
MluCI AATT 3 cut(s) 555, 598, 618
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 181, 336
MseI TTAA 2 cut(s) 554, 582
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 3 cut(s) 129, 135, 213
MspR9I CCNGG 2 cut(s) 135, 317
MvaI CCWGG 1 cut(s) 317
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 23, 138
NciI CCSGG 1 cut(s) 135
NdeII GATC 1 cut(s) 215
NlaIII CATG 3 cut(s) 84, 280, 298
NlaIV GGNNCC 5 cut(s) 6, 100, 127, 133, 145
NmeAIII GCCGAG 1 cut(s) 327
PaqCI CACCTGC 2 cut(s) 101, 293
PkrI GCNGC 5 cut(s) 98, 140, 143, 192, 457
PleI GAGTC 1 cut(s) 404
PmaCI CACGTG 1 cut(s) 468
PmlI CACGTG 1 cut(s) 468
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 315
PspCI CACGTG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 315
PspN4I GGNNCC 5 cut(s) 6, 100, 127, 133, 145
PspPI GGNCC 3 cut(s) 131, 330, 350
RseI CAYNNNNRTG 1 cut(s) 293
SaqAI TTAA 2 cut(s) 554, 582
SatI GCNGC 5 cut(s) 97, 139, 142, 191, 456
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 3 cut(s) 131, 330, 350
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 2 cut(s) 135, 317
SfaNI GCATC 1 cut(s) 26
SinI GGWCC 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 293
Sse9I AATT 3 cut(s) 555, 598, 618
SsiI CCGC 3 cut(s) 96, 141, 455
StyD4I CCNGG 2 cut(s) 133, 315
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 3 cut(s) 470, 523, 578
TaqI TCGA 2 cut(s) 324, 595
TasI AATT 3 cut(s) 555, 598, 618
TauI GCSGC 3 cut(s) 99, 144, 458
Tru1I TTAA 2 cut(s) 554, 582
Tru9I TTAA 2 cut(s) 554, 582
TseI GCWGC 2 cut(s) 138, 190
TspDTI ATGAA 2 cut(s) 69, 352
TspGWI ACGGA 2 cut(s) 466, 491
VpaK11BI GGWCC 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.