Rorug02G0183300

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014642
Physical Location & Seq
Reverse (-)
17082252 .. 17083076
825 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0183300.1

Sequence Viewer

Length: 474 bp
ATGACAACTAAATGCCTTGGTTTCCTTTTGGTTCTTCTTTTGCTCGACTCCACATTTTTTGCAGCAAGTGCTCGACGTTTTGATATTATGAAGCACCCCAACTTGTGTCGCGGAGCAATTGGGGTTTTCTTTGACGGCTTATGTCTCGGATCGATCAAGGAGTCGGGTCCTAGCCCGGGTCAAGGGAACAAATTCACTGACCAACGGACCCTTGGAGGAAGAAAGGTGTCCGGCCCTAGCCCTGGTACTGGAAACAAAGTCACAAATGTTGAGACACTCGGAGGGGTTAAAGATTCCGGCTCAAGCTCTGGTACGGGACACAAATTTACTAATGTTGAGACCAACGAAGGGATTAAGGATACTGGCCCCAGCCGTGATACAGAAAACTCATTTACGAATGTAGATATACTTGCTGGGATTAAGGACGGCCCAAGCCCTGGTACAGGAAACTCATTTACAAATGTAACTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

157

Amino Acids

16.32

Weight (kDa)

8.5

Isoelectric Point (pI)

27.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014642)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20600
malus_domestica MD01G1032500.v1.1 MD15G1322500.v1.1
prunus_persica Prupe.6G189700_v2.0.a1
pyrus_communis pycom01g05980 pycom15g28310
rosa_chinensis RchiOBHm_Chr2g0113031
rosa_laevigata RLG00000018031
rosa_multiflora Rmu_sc0002351.1_g000105 Rmu_sc0024545.1_g000002
rosa_roxburghii Rroxscaffold_2G00130930
rosa_rugosa Rorug02G0183300
rosa_samantha Rh2AG238500 Rh2BG252300 Rh2CG242500 Rh2DG246500
rosa_wichuraiana Rw2G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 437
AccII CGCG 1 cut(s) 111
AciI CCGC 1 cut(s) 111
AclWI GGATC 1 cut(s) 157
AcsI RAATTY 2 cut(s) 191, 323
AfaI GTAC 3 cut(s) 247, 313, 442
AfiI CCNNNNNNNGG 7 cut(s) 176, 182, 242, 248, 348, 437, 443
AjnI CCWGG 2 cut(s) 241, 436
AluBI AGCT 1 cut(s) 306
AluI AGCT 1 cut(s) 306
Alw21I GWGCWC 1 cut(s) 73
Alw26I GTCTC 3 cut(s) 149, 266, 332
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 3 cut(s) 232, 364, 427
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 2 cut(s) 191, 323
Asp700I GAANNNNTTC 1 cut(s) 191
AspS9I GGNCC 5 cut(s) 167, 207, 233, 365, 428
AsuC2I CCSGG 2 cut(s) 176, 177
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 2 cut(s) 167, 207
Bbv12I GWGCWC 1 cut(s) 73
BbvI GCAGC 1 cut(s) 74
BceAI ACGGC 3 cut(s) 151, 357, 442
BciT130I CCWGG 2 cut(s) 243, 438
BciVI GTATCC 1 cut(s) 352
BcnI CCSGG 2 cut(s) 176, 177
BcoDI GTCTC 3 cut(s) 149, 266, 332
BfaI CTAG 2 cut(s) 171, 237
BfuI GTATCC 1 cut(s) 352
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme1390I CCNGG 4 cut(s) 176, 177, 243, 438
Bme18I GGWCC 2 cut(s) 167, 207
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 5 cut(s) 167, 207, 233, 365, 428
BmiI GGNNCC 3 cut(s) 168, 209, 367
BmrFI CCNGG 4 cut(s) 176, 177, 243, 438
BpuEI CTTGAG 1 cut(s) 286
BpuMI CCSGG 2 cut(s) 176, 177
Bsa29I ATCGAT 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 332
BsaJI CCNNGG 5 cut(s) 16, 175, 211, 241, 436
Bsc4I CCNNNNNNNGG 7 cut(s) 176, 182, 242, 248, 348, 437, 443
Bse1I ACTGG 2 cut(s) 253, 367
BseBI CCWGG 2 cut(s) 243, 438
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 5 cut(s) 16, 175, 211, 241, 436
BseLI CCNNNNNNNGG 7 cut(s) 176, 182, 242, 248, 348, 437, 443
BseNI ACTGG 2 cut(s) 253, 367
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 2 cut(s) 368, 413
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 3 cut(s) 234, 366, 429
BshVI ATCGAT 1 cut(s) 152
BsiHKAI GWGCWC 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 3 cut(s) 176, 231, 297
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 7 cut(s) 176, 182, 242, 248, 348, 437, 443
BsmAI GTCTC 3 cut(s) 149, 266, 332
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 3 cut(s) 234, 366, 429
Bso31I GGTCTC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 149, 153
BspACI CCGC 1 cut(s) 111
BspANI GGCC 3 cut(s) 234, 366, 429
BspDI ATCGAT 1 cut(s) 152
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 168, 209, 367
BspPI GGATC 1 cut(s) 157
BspTNI GGTCTC 1 cut(s) 332
BsrI ACTGG 2 cut(s) 253, 367
BssECI CCNNGG 5 cut(s) 16, 175, 211, 241, 436
BssMI GATC 2 cut(s) 149, 153
BssT1I CCWWGG 2 cut(s) 16, 211
Bst2UI CCWGG 2 cut(s) 243, 438
BstAPI GCANNNNNTGC 1 cut(s) 68
BstENI CCTNNNNNAGG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 111
BstKTI GATC 2 cut(s) 152, 156
BstMAI GTCTC 3 cut(s) 149, 266, 332
BstMBI GATC 2 cut(s) 149, 153
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 2 cut(s) 243, 438
BstSCI CCNGG 4 cut(s) 174, 175, 241, 436
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 74
Bsu15I ATCGAT 1 cut(s) 152
BsuI GTATCC 1 cut(s) 352
BsuRI GGCC 3 cut(s) 234, 366, 429
BsuTUI ATCGAT 1 cut(s) 152
BtsIMutI CAGTG 1 cut(s) 195
Cfr13I GGNCC 5 cut(s) 167, 207, 233, 365, 428
Cfr9I CCCGGG 1 cut(s) 175
ClaI ATCGAT 1 cut(s) 152
Csp6I GTAC 3 cut(s) 246, 312, 441
CspCI CAANNNNNGTGG 2 cut(s) 40, 75
CviQI GTAC 3 cut(s) 246, 312, 441
DpnI GATC 2 cut(s) 151, 155
DpnII GATC 2 cut(s) 149, 153
Eco130I CCWWGG 2 cut(s) 16, 211
Eco31I GGTCTC 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 167, 207
Eco88I CYCGRG 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 441
EcoO109I RGGNCCY 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 241, 436
EcoT14I CCWWGG 2 cut(s) 16, 211
ErhI CCWWGG 2 cut(s) 16, 211
FaiI YATR 3 cut(s) 89, 142, 407
FaqI GGGAC 1 cut(s) 330
Fnu4HI GCNGC 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 171, 237
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 2 cut(s) 372, 417
HaeIII GGCC 3 cut(s) 234, 366, 429
HapII CCGG 3 cut(s) 176, 231, 297
HinfI GANTC 3 cut(s) 47, 161, 293
HpaII CCGG 3 cut(s) 176, 231, 297
Hpy188I TCNGA 2 cut(s) 149, 281
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 62
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 76
Kzo9I GATC 2 cut(s) 149, 153
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 1 cut(s) 74
MaeI CTAG 2 cut(s) 171, 237
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 259, 463
MalI GATC 2 cut(s) 151, 155
MboI GATC 2 cut(s) 149, 153
MboII GAAGA 2 cut(s) 26, 231
MfeI CAATTG 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 73
MluCI AATT 3 cut(s) 117, 191, 323
MlyI GAGTC 2 cut(s) 41, 170
MnlI CCTC 2 cut(s) 209, 275
MroXI GAANNNNTTC 1 cut(s) 191
MseI TTAA 3 cut(s) 288, 354, 420
MspI CCGG 3 cut(s) 176, 231, 297
MspR9I CCNGG 4 cut(s) 176, 177, 243, 438
MunI CAATTG 1 cut(s) 117
MvaI CCWGG 2 cut(s) 243, 438
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 68
NciI CCSGG 2 cut(s) 176, 177
NdeII GATC 2 cut(s) 149, 153
NlaIV GGNNCC 3 cut(s) 168, 209, 367
NmuCI GTSAC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 293
PflMI CCANNNNNTGG 1 cut(s) 437
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 2 cut(s) 41, 169
PpsI GAGTC 2 cut(s) 41, 169
PpuMI RGGWCCY 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 167
Psp6I CCWGG 2 cut(s) 241, 436
PspFI CCCAGC 2 cut(s) 368, 413
PspGI CCWGG 2 cut(s) 241, 436
PspN4I GGNNCC 3 cut(s) 168, 209, 367
PspPI GGNCC 5 cut(s) 167, 207, 233, 365, 428
PspPPI RGGWCCY 1 cut(s) 167
RsaI GTAC 3 cut(s) 247, 313, 442
RsaNI GTAC 3 cut(s) 246, 312, 441
SaqAI TTAA 3 cut(s) 288, 354, 420
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 149, 153
Sau96I GGNCC 5 cut(s) 167, 207, 233, 365, 428
SchI GAGTC 2 cut(s) 41, 170
ScrFI CCNGG 4 cut(s) 176, 177, 243, 438
SduI GDGCHC 1 cut(s) 73
SetI ASST 3 cut(s) 79, 228, 308
SinI GGWCC 2 cut(s) 167, 207
SmaI CCCGGG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 3 cut(s) 117, 191, 323
SsiI CCGC 1 cut(s) 111
SspMI CTAG 2 cut(s) 171, 237
StyD4I CCNGG 4 cut(s) 174, 175, 241, 436
StyI CCWWGG 2 cut(s) 16, 211
TaiI ACGT 1 cut(s) 79
TaqI TCGA 3 cut(s) 45, 73, 152
TasI AATT 3 cut(s) 117, 191, 323
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 3 cut(s) 288, 354, 420
Tru9I TTAA 3 cut(s) 288, 354, 420
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 104
TspGWI ACGGA 1 cut(s) 220
TspMI CCCGGG 1 cut(s) 175
TspRI CASTG 1 cut(s) 202
Van91I CCANNNNNTGG 1 cut(s) 437
VpaK11BI GGWCC 2 cut(s) 167, 207
XagI CCTNNNNNAGG 1 cut(s) 441
XapI RAATTY 2 cut(s) 191, 323
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmaI CCCGGG 1 cut(s) 175
XmnI GAANNNNTTC 1 cut(s) 191
XspI CTAG 2 cut(s) 171, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.