Rmu_sc0024545.1_g000002

wall-associated receptor kinase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0024545.1
OG0014642
Physical Location & Seq
Forward (+)
8889 .. 9449
561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0024545.1_g000002.1.cds

Sequence Viewer

Length: 561 bp
atggaaccacagcgagcatcattagctctttcactcatcatcttcaacctcctcctcaccaccacaacccaatacccttcatgccaatccacctgcggctccctccaccttagctaccccttcggctccggccccggctgcggctccccaaccttccaaccctacataacttgcacaacaaccaccaaacagctccttctgaccactcacaccggatcataccccatcacctccatctcctactccaccaacaccctaaccctaacaccaccctccatgtccacctgcacgtccatgcaaccctgcccctccaacctgggcctcgactgggccagcccgttccagctcggcccatcaactttcatcctcctctcctgccaaccccctacctcctctctcaccctcaaagactcgtcctccccaatctgcgacccctcctactcccacctctgcgcggccatctacacgtgtccctccgtcacgggcctcaacctccctctcttccctcccaccaacacttgctgtgtctactcccctggaaacctagacgccaagggcgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind WAK_assoc

Protein Analysis

187

Amino Acids

19.8

Weight (kDa)

5.79

Isoelectric Point (pI)

51.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014642)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20600
malus_domestica MD01G1032500.v1.1 MD15G1322500.v1.1
prunus_persica Prupe.6G189700_v2.0.a1
pyrus_communis pycom01g05980 pycom15g28310
rosa_chinensis RchiOBHm_Chr2g0113031
rosa_laevigata RLG00000018031
rosa_multiflora Rmu_sc0002351.1_g000105 Rmu_sc0024545.1_g000002
rosa_roxburghii Rroxscaffold_2G00130930
rosa_rugosa Rorug02G0183300
rosa_samantha Rh2AG238500 Rh2BG252300 Rh2CG242500 Rh2DG246500
rosa_wichuraiana Rw2G018700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 101, 293
Acc36I ACCTGC 2 cut(s) 101, 293
AccI GTMKAC 1 cut(s) 528
AccII CGCG 1 cut(s) 455
AciI CCGC 3 cut(s) 96, 141, 455
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 456
AcvI CACGTG 1 cut(s) 468
AcyI GRCGYC 1 cut(s) 549
AfiI CCNNNNNNNGG 3 cut(s) 140, 328, 454
AflIII ACRYGT 2 cut(s) 465, 467
AgsI TTSAA 1 cut(s) 46
AjiI CACGTC 1 cut(s) 291
AjnI CCWGG 2 cut(s) 315, 535
AluBI AGCT 4 cut(s) 26, 114, 193, 346
AluI AGCT 4 cut(s) 26, 114, 193, 346
AlwI GGATC 1 cut(s) 223
AoxI GGCC 6 cut(s) 130, 319, 330, 349, 456, 484
ApeKI GCWGC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 455
AspS9I GGNCC 5 cut(s) 131, 319, 330, 350, 484
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 3 cut(s) 49, 220, 391
BbrPI CACGTG 1 cut(s) 468
BbvI GCAGC 1 cut(s) 125
BccI CCATC 4 cut(s) 233, 242, 361, 467
BciT130I CCWGG 2 cut(s) 317, 537
BcnI CCSGG 1 cut(s) 135
BfaI CTAG 1 cut(s) 545
BfuAI ACCTGC 2 cut(s) 101, 293
BisI GCNGC 4 cut(s) 97, 139, 142, 456
BlsI GCNGC 4 cut(s) 98, 140, 143, 457
Bme1390I CCNGG 3 cut(s) 135, 317, 537
BmgBI CACGTC 1 cut(s) 291
BmgT120I GGNCC 5 cut(s) 131, 319, 330, 350, 484
BmiI GGNNCC 5 cut(s) 6, 100, 127, 133, 145
BmrFI CCNGG 3 cut(s) 135, 317, 537
BmrI ACTGGG 1 cut(s) 337
BmsI GCATC 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 337
Bpu10I CCTNAGC 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 468
BsaHI GRCGYC 1 cut(s) 549
BsaJI CCNNGG 4 cut(s) 133, 316, 535, 552
BsaWI WCCGGW 1 cut(s) 212
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 3 cut(s) 140, 328, 454
Bse1I ACTGG 1 cut(s) 332
BseBI CCWGG 2 cut(s) 317, 537
BseDI CCNNGG 4 cut(s) 133, 316, 535, 552
BseGI GGATG 1 cut(s) 363
BseLI CCNNNNNNNGG 3 cut(s) 140, 328, 454
BseNI ACTGG 1 cut(s) 332
BseRI GAGGAG 4 cut(s) 41, 44, 359, 382
BseXI GCAGC 1 cut(s) 125
BsgI GTGCAG 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 455
BshFI GGCC 6 cut(s) 132, 321, 332, 351, 458, 486
BsiSI CCGG 3 cut(s) 129, 135, 213
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 3 cut(s) 140, 328, 454
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 6 cut(s) 132, 321, 332, 351, 458, 486
Bsp143I GATC 1 cut(s) 215
BspACI CCGC 3 cut(s) 96, 141, 455
BspANI GGCC 6 cut(s) 132, 321, 332, 351, 458, 486
BspFNI CGCG 1 cut(s) 455
BspLI GGNNCC 5 cut(s) 6, 100, 127, 133, 145
BspMI ACCTGC 2 cut(s) 101, 293
BspPI GGATC 1 cut(s) 223
BsrI ACTGG 1 cut(s) 332
BssECI CCNNGG 4 cut(s) 133, 316, 535, 552
BssMI GATC 1 cut(s) 215
BssNI GRCGYC 1 cut(s) 549
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 2 cut(s) 317, 537
Bst6I CTCTTC 1 cut(s) 506
BstACI GRCGYC 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 468
BstC8I GCNNGC 2 cut(s) 15, 334
BstDEI CTNAG 1 cut(s) 110
BstF5I GGATG 1 cut(s) 363
BstFNI CGCG 1 cut(s) 455
BstHHI GCGC 1 cut(s) 455
BstKTI GATC 1 cut(s) 218
BstMBI GATC 1 cut(s) 215
BstMWI GCNNNNNNNGC 2 cut(s) 23, 138
BstNI CCWGG 2 cut(s) 317, 537
BstSCI CCNGG 3 cut(s) 133, 315, 535
BstUI CGCG 1 cut(s) 455
BstV1I GCAGC 1 cut(s) 125
BsuRI GGCC 6 cut(s) 132, 321, 332, 351, 458, 486
BtrI CACGTC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 363
BveI ACCTGC 2 cut(s) 101, 293
Cac8I GCNNGC 2 cut(s) 15, 334
CfoI GCGC 1 cut(s) 455
Cfr13I GGNCC 5 cut(s) 131, 319, 330, 350, 484
CviAII CATG 3 cut(s) 81, 277, 295
DdeI CTNAG 1 cut(s) 110
DpnI GATC 1 cut(s) 217
DpnII GATC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 456
Eam1104I CTCTTC 1 cut(s) 506
EarI CTCTTC 1 cut(s) 506
Eco130I CCWWGG 1 cut(s) 552
Eco72I CACGTG 1 cut(s) 468
EcoRII CCWGG 2 cut(s) 315, 535
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 3 cut(s) 84, 280, 298
FaiI YATR 5 cut(s) 82, 167, 220, 278, 296
FaqI GGGAC 1 cut(s) 456
FatI CATG 3 cut(s) 80, 276, 294
FblI GTMKAC 1 cut(s) 528
Fnu4HI GCNGC 4 cut(s) 97, 139, 142, 456
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 4 cut(s) 97, 139, 142, 456
FspBI CTAG 1 cut(s) 545
GlaI GCGC 1 cut(s) 454
GluI GCNGC 4 cut(s) 97, 139, 142, 456
HaeIII GGCC 6 cut(s) 132, 321, 332, 351, 458, 486
HapII CCGG 3 cut(s) 129, 135, 213
HhaI GCGC 1 cut(s) 455
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 3 cut(s) 84, 280, 298
Hin6I GCGC 1 cut(s) 453
HinP1I GCGC 1 cut(s) 453
HinfI GANTC 1 cut(s) 410
HpaII CCGG 3 cut(s) 129, 135, 213
HphI GGTGA 3 cut(s) 49, 220, 391
Hpy166II GTNNAC 2 cut(s) 282, 529
Hpy188I TCNGA 1 cut(s) 201
Hpy8I GTNNAC 2 cut(s) 282, 529
HpyAV CCTTC 4 cut(s) 87, 130, 163, 206
HpyCH4IV ACGT 2 cut(s) 290, 467
HpyCH4V TGCA 3 cut(s) 174, 288, 298
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 138
HpyF3I CTNAG 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 290, 467
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 3 cut(s) 84, 280, 298
HspAI GCGC 1 cut(s) 453
Kzo9I GATC 1 cut(s) 215
LmnI GCTCC 4 cut(s) 104, 131, 149, 198
Lsp1109I GCAGC 1 cut(s) 125
LweI GCATC 1 cut(s) 26
MaeI CTAG 1 cut(s) 545
MaeII ACGT 2 cut(s) 290, 467
MaeIII GTNAC 1 cut(s) 478
MalI GATC 1 cut(s) 217
MboI GATC 1 cut(s) 215
MboII GAAGA 2 cut(s) 34, 493
MlyI GAGTC 1 cut(s) 404
MmeI TCCRAC 2 cut(s) 181, 336
MslI CAYNNNNRTG 1 cut(s) 293
MspI CCGG 3 cut(s) 129, 135, 213
MspR9I CCNGG 3 cut(s) 135, 317, 537
MvaI CCWGG 2 cut(s) 317, 537
MvnI CGCG 1 cut(s) 455
MwoI GCNNNNNNNGC 2 cut(s) 23, 138
NciI CCSGG 1 cut(s) 135
NdeII GATC 1 cut(s) 215
NlaIII CATG 3 cut(s) 84, 280, 298
NlaIV GGNNCC 5 cut(s) 6, 100, 127, 133, 145
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 1 cut(s) 478
PaqCI CACCTGC 2 cut(s) 101, 293
PcsI WCGNNNNNNNCGW 1 cut(s) 555
PkrI GCNGC 4 cut(s) 98, 140, 143, 457
PleI GAGTC 1 cut(s) 404
PmaCI CACGTG 1 cut(s) 468
PmlI CACGTG 1 cut(s) 468
PpsI GAGTC 1 cut(s) 404
Ppu21I YACGTR 1 cut(s) 468
Psp6I CCWGG 2 cut(s) 315, 535
PspCI CACGTG 1 cut(s) 468
PspGI CCWGG 2 cut(s) 315, 535
PspN4I GGNNCC 5 cut(s) 6, 100, 127, 133, 145
PspPI GGNCC 5 cut(s) 131, 319, 330, 350, 484
RseI CAYNNNNRTG 1 cut(s) 293
SatI GCNGC 4 cut(s) 97, 139, 142, 456
Sau3AI GATC 1 cut(s) 215
Sau96I GGNCC 5 cut(s) 131, 319, 330, 350, 484
SchI GAGTC 1 cut(s) 404
ScrFI CCNGG 3 cut(s) 135, 317, 537
SfaNI GCATC 1 cut(s) 26
SmiMI CAYNNNNRTG 1 cut(s) 293
SsiI CCGC 3 cut(s) 96, 141, 455
SspMI CTAG 1 cut(s) 545
StyD4I CCNGG 3 cut(s) 133, 315, 535
StyI CCWWGG 1 cut(s) 552
TaiI ACGT 2 cut(s) 293, 470
TaqI TCGA 1 cut(s) 324
TauI GCSGC 3 cut(s) 99, 144, 458
TseFI GTSAC 1 cut(s) 478
TseI GCWGC 1 cut(s) 138
Tsp45I GTSAC 1 cut(s) 478
TspDTI ATGAA 2 cut(s) 69, 352
TspGWI ACGGA 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 528
XspI CTAG 1 cut(s) 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.