Prupe.6G213500_v2.0.a1

ubiquitin-conjugating enzyme

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014640
Physical Location & Seq
Forward (+)
22129629 .. 22132752
3124 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G213500.1

Sequence Viewer

Length: 462 bp
ATGGCGACGTCGGCTCAGCTCCGGCTCATGTCCGATCTCAGAACCATAACAAGCGAGCCTCCTGAGGGTTGCAGCGCCAGCCCTCTGTCCGATGATAACCTGATGGTGTGGAGCGCCACCATATTTGGGCCCGAGGAGAGCCCCTGGGAAGGTGGTGCTTTCAGCTTGAGGTTAACATTTGGTGAACGTTACCCCGAGAAGCCGCCTCGGGTTCGATTTACCTCCGAAATGTTCCATCCAAATGTTTATCATGATGGTACACTGTGCATGGATATAATTCAGGATGCTTGGTCACCCTGCCACAATGTATCTACGATTTTGACATCTATTCAATCGCTTCTCACGGATCCAAATCCTGCAAGTCCGGCAAACATTGAGGCCGCTCACATGTATCAGCATGACATACAAGCTTACAACAAGAGGGTACGCCGCTGTGCTCGTCATTCCATTGATTCCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04120 map04120
Pfam Domains
Protein Families
UQ_con

Protein Analysis

154

Amino Acids

17.15

Weight (kDa)

5.41

Isoelectric Point (pI)

70.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014640)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g18560 FvH4_1g18560 FvH4_1g18560
malus_domestica MD02G1193300.v1.1 MD15G1303600.v1.1
prunus_persica Prupe.6G213500_v2.0.a1
pyrus_communis pycom02g15700 pycom15g26650
rosa_chinensis RchiOBHm_Chr2g0109261
rosa_laevigata RLG00000017729
rosa_multiflora Rmu_sc0001807.1_g000008
rosa_roxburghii Rroxscaffold_2G00134350
rosa_rugosa Rorug02G0158900
rosa_samantha Rh2AG210300 Rh2BG220700 Rh2CG212700 Rh2DG216500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 11
AccBSI CCGCTC 1 cut(s) 383
AciI CCGC 3 cut(s) 203, 381, 430
AclI AACGTT 1 cut(s) 187
AclWI GGATC 2 cut(s) 341, 354
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 2 cut(s) 259, 426
AfiI CCNNNNNNNGG 3 cut(s) 65, 126, 149
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 1 cut(s) 332
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 3 cut(s) 19, 165, 410
AluI AGCT 3 cut(s) 19, 165, 410
Alw21I GWGCWC 1 cut(s) 439
AlwI GGATC 2 cut(s) 341, 354
Ama87I CYCGRG 3 cut(s) 131, 194, 207
AoxI GGCC 2 cut(s) 128, 378
ApaI GGGCCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 72
AspLEI GCGC 2 cut(s) 77, 116
AspS9I GGNCC 2 cut(s) 128, 129
AsuHPI GGTGA 2 cut(s) 194, 285
AvaI CYCGRG 3 cut(s) 131, 194, 207
AxyI CCTNAGG 1 cut(s) 63
BaeGI GKGCMC 1 cut(s) 132
BamHI GGATCC 1 cut(s) 346
BanII GRGCYC 2 cut(s) 132, 143
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 1 cut(s) 84
BccI CCATC 3 cut(s) 97, 243, 248
BciT130I CCWGG 1 cut(s) 145
BfoI RGCGCY 2 cut(s) 78, 117
BisI GCNGC 4 cut(s) 73, 203, 381, 430
BlpI GCTNAGC 1 cut(s) 15
BlsI GCNGC 4 cut(s) 74, 204, 382, 431
Bme1390I CCNGG 1 cut(s) 145
BmeT110I CYCGRG 3 cut(s) 131, 194, 207
BmgT120I GGNCC 2 cut(s) 128, 129
BmiI GGNNCC 2 cut(s) 130, 348
BmrFI CCNGG 1 cut(s) 145
BmsI GCATC 1 cut(s) 274
Bpu1102I GCTNAGC 1 cut(s) 15
BpuEI CTTGAG 1 cut(s) 187
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 132, 143, 144, 206
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 126, 149
Bse21I CCTNAGG 1 cut(s) 63
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 4 cut(s) 132, 143, 144, 206
BseGI GGATG 2 cut(s) 235, 289
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 3 cut(s) 65, 126, 149
BseMII CTCAG 3 cut(s) 29, 52, 54
BseRI GAGGAG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 132
BseXI GCAGC 1 cut(s) 84
BshFI GGCC 2 cut(s) 130, 380
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 3 cut(s) 131, 194, 207
BsiSI CCGG 2 cut(s) 22, 365
BslI CCNNNNNNNGG 3 cut(s) 65, 126, 149
BsnI GGCC 2 cut(s) 130, 380
BsoBI CYCGRG 3 cut(s) 131, 194, 207
Bsp120I GGGCCC 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 132, 143, 439
Bsp143I GATC 2 cut(s) 34, 346
Bsp1720I GCTNAGC 1 cut(s) 15
BspACI CCGC 3 cut(s) 203, 381, 430
BspANI GGCC 2 cut(s) 130, 380
BspCNI CTCAG 3 cut(s) 28, 51, 55
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 2 cut(s) 130, 348
BspPI GGATC 2 cut(s) 341, 354
BsrBI CCGCTC 1 cut(s) 383
BssECI CCNNGG 4 cut(s) 132, 143, 144, 206
BssMI GATC 2 cut(s) 34, 346
BssNI GRCGYC 1 cut(s) 8
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 56, 79
BstDEI CTNAG 3 cut(s) 15, 38, 63
BstEII GGTNACC 1 cut(s) 291
BstF5I GGATG 2 cut(s) 235, 289
BstH2I RGCGCY 2 cut(s) 78, 117
BstHHI GCGC 2 cut(s) 77, 116
BstKTI GATC 2 cut(s) 37, 349
BstMBI GATC 2 cut(s) 34, 346
BstMWI GCNNNNNNNGC 3 cut(s) 11, 78, 365
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 391
BstPI GGTNACC 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 143
BstSLI GKGCMC 1 cut(s) 132
BstV1I GCAGC 1 cut(s) 84
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
Bsu36I CCTNAGG 1 cut(s) 63
BsuRI GGCC 2 cut(s) 130, 380
BtsCI GGATG 2 cut(s) 235, 289
BtsIMutI CAGTG 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 56, 79
CciI TCATGA 1 cut(s) 250
CfoI GCGC 2 cut(s) 77, 116
Cfr13I GGNCC 2 cut(s) 128, 129
Csp6I GTAC 2 cut(s) 258, 425
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviAII CATG 5 cut(s) 28, 251, 268, 388, 398
CviQI GTAC 2 cut(s) 258, 425
DdeI CTNAG 3 cut(s) 15, 38, 63
DpnI GATC 2 cut(s) 36, 348
DpnII GATC 2 cut(s) 34, 346
Eco24I GRGCYC 2 cut(s) 132, 143
Eco81I CCTNAGG 1 cut(s) 63
Eco88I CYCGRG 3 cut(s) 131, 194, 207
Eco91I GGTNACC 1 cut(s) 291
EcoO65I GGTNACC 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 143
EcoT38I GRGCYC 2 cut(s) 132, 143
FaeI CATG 5 cut(s) 31, 254, 271, 391, 401
FaiI YATR 9 cut(s) 29, 47, 122, 252, 269, 275, 389, 399, 404
FatI CATG 5 cut(s) 27, 250, 267, 387, 397
Fnu4HI GCNGC 4 cut(s) 73, 203, 381, 430
FokI GGATG 2 cut(s) 222, 296
FriOI GRGCYC 2 cut(s) 132, 143
Fsp4HI GCNGC 4 cut(s) 73, 203, 381, 430
GlaI GCGC 2 cut(s) 76, 115
GluI GCNGC 4 cut(s) 73, 203, 381, 430
HaeII RGCGCY 2 cut(s) 78, 117
HaeIII GGCC 2 cut(s) 130, 380
HapII CCGG 2 cut(s) 22, 365
HhaI GCGC 2 cut(s) 77, 116
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 5 cut(s) 31, 254, 271, 391, 401
Hin6I GCGC 2 cut(s) 75, 114
HinP1I GCGC 2 cut(s) 75, 114
HincII GTYRAC 1 cut(s) 174
HindII GTYRAC 1 cut(s) 174
HindIII AAGCTT 1 cut(s) 408
HinfI GANTC 1 cut(s) 452
HpaI GTTAAC 1 cut(s) 174
HpaII CCGG 2 cut(s) 22, 365
HphI GGTGA 2 cut(s) 194, 285
Hpy166II GTNNAC 3 cut(s) 174, 185, 260
Hpy188I TCNGA 4 cut(s) 34, 41, 91, 226
Hpy188III TCNNGA 3 cut(s) 62, 251, 281
Hpy8I GTNNAC 3 cut(s) 174, 185, 260
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 1 cut(s) 143
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 2 cut(s) 8, 187
HpyCH4V TGCA 3 cut(s) 72, 267, 359
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 78, 365
HpyF3I CTNAG 3 cut(s) 15, 38, 63
HpySE526I ACGT 2 cut(s) 8, 187
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 5 cut(s) 31, 254, 271, 391, 401
HspAI GCGC 2 cut(s) 75, 114
KspAI GTTAAC 1 cut(s) 174
Kzo9I GATC 2 cut(s) 34, 346
LmnI GCTCC 2 cut(s) 24, 111
Lsp1109I GCAGC 1 cut(s) 84
LweI GCATC 1 cut(s) 274
MaeII ACGT 2 cut(s) 8, 187
MaeIII GTNAC 2 cut(s) 188, 291
MalI GATC 2 cut(s) 36, 348
MbiI CCGCTC 1 cut(s) 383
MboI GATC 2 cut(s) 34, 346
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 3 cut(s) 132, 143, 439
MluCI AATT 1 cut(s) 276
MnlI CCTC 9 cut(s) 58, 69, 93, 127, 162, 216, 232, 370, 414
MseI TTAA 1 cut(s) 173
MslI CAYNNNNRTG 1 cut(s) 240
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 2 cut(s) 22, 365
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 3 cut(s) 11, 78, 365
NdeII GATC 2 cut(s) 34, 346
NlaIII CATG 5 cut(s) 31, 254, 271, 391, 401
NlaIV GGNNCC 2 cut(s) 130, 348
NmuCI GTSAC 1 cut(s) 291
NspI RCATGY 1 cut(s) 391
PagI TCATGA 1 cut(s) 250
PasI CCCWGGG 1 cut(s) 144
PciI ACATGT 1 cut(s) 387
PfeI GAWTC 1 cut(s) 452
PkrI GCNGC 4 cut(s) 74, 204, 382, 431
PscI ACATGT 1 cut(s) 387
Psp1406I AACGTT 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 291
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 2 cut(s) 130, 348
PspOMI GGGCCC 1 cut(s) 128
PspPI GGNCC 2 cut(s) 128, 129
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 2 cut(s) 259, 426
RsaNI GTAC 2 cut(s) 258, 425
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 1 cut(s) 173
SatI GCNGC 4 cut(s) 73, 203, 381, 430
Sau3AI GATC 2 cut(s) 34, 346
Sau96I GGNCC 2 cut(s) 128, 129
ScrFI CCNGG 1 cut(s) 145
SduI GDGCHC 3 cut(s) 132, 143, 439
SetI ASST 9 cut(s) 11, 21, 102, 154, 167, 173, 190, 224, 412
SfaNI GCATC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 1 cut(s) 276
SsiI CCGC 3 cut(s) 203, 381, 430
StyD4I CCNGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 2 cut(s) 11, 190
TaqI TCGA 1 cut(s) 214
TasI AATT 1 cut(s) 276
TauI GCSGC 3 cut(s) 205, 383, 432
TfiI GAWTC 1 cut(s) 452
Tru1I TTAA 1 cut(s) 173
Tru9I TTAA 1 cut(s) 173
TscAI CASTG 1 cut(s) 267
TseFI GTSAC 1 cut(s) 291
TseI GCWGC 1 cut(s) 72
Tsp45I GTSAC 1 cut(s) 291
TspGWI ACGGA 1 cut(s) 359
TspRI CASTG 1 cut(s) 267
XceI RCATGY 1 cut(s) 391
ZraI GACGTC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.