Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0007013

Physical Location & Seq

Genomic Coordinates Forward (+)

24539896 .. 24544165

Gene Structure 4270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G249900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGCTCCACCAATTGAGACTGTTCAGAAAGTTGAGCCTCCTCAAAAAGTTATCGACTCCCATCATCATCATCATCATCATCATTCCTCACATCCACCTCTTAATGAGAGGATACTTTCTTCCATGACCAGGAGGTCTATAGCTGCACACCCTTGGCATGATCTTGAAATAGGACCTGGAGCTCCAAAGATTTTCAACTGTGTTATTGAAATTCCAAAAGGAAGCAAAGTGAAATATGAGCTTGACAAAAAAACTGGACTCATCAAGGTTGACCGCATACTGTACTCATCGGTTGTCTACCCCCACAACTATGGCTTCATCCCCCGAACTCTTTGTGAGGACAATGACCCCTTGGATGTCTTGATTATTATGCAGGAGCCAGTTGTTCCTGGATGCTTTCTTCGGGCAAAAGCTATTGGCTTGATGCCTATGATCGATCAGGGTGAGAAAGATGACAAGATAATTGCTGTCTGTGCTGATGATCCCGAATACCGACACTACCAGGACATCAAGGATCTCCCACCACATCGTTTGGCTGAGATCCGGCGCTTCTTTGAGGACTACAAGAAAAATGAGAACAAAGAAGTTGCAGTTGACGACTTTCTCCCTGCATCTGCTGCCTATGATGCAATCCAGCATTCCATGGATCTATATGCGGACTACATAGTGGAGAGCCTCAGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

229

Amino Acids

26.18

Weight (kDa)

6.09

Isoelectric Point (pI)

47.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53620
fragaria_vesca	FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350
malus_domestica	MD04G1120600.v1.1 MD12G1137900.v1.1
prunus_persica	Prupe.6G249900_v2.0.a1
pyrus_communis	pycom04g10970 pycom12g13180
rosa_chinensis	RchiOBHm_Chr3g0467401
rosa_laevigata	RLG00000024507
rosa_multiflora	Rmu_sc0001601.1_g000012 Rmu_sc0012351.1_g000009
rosa_roxburghii	Rroxscaffold_6G00413700
rosa_rugosa	Rorug03G0086500 Rorug03G0086600 Rorug03G0086700
rosa_samantha	Rh3AG135300 Rh3BG156800 Rh3CG156600 Rh3DG157600
rosa_wichuraiana	Rw3G012830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	3 cut(s)	274, 656, 682
AclWI	GGATC	4 cut(s)	476, 522, 535, 654
AcsI	RAATTY	1 cut(s)	210
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	129
AgsI	TTSAA	3 cut(s)	167, 196, 209
AjnI	CCWGG	4 cut(s)	128, 175, 388, 501
AluBI	AGCT	4 cut(s)	143, 182, 241, 413
AluI	AGCT	4 cut(s)	143, 182, 241, 413
Alw21I	GWGCWC	1 cut(s)	184
Alw26I	GTCTC	1 cut(s)	11
AlwI	GGATC	4 cut(s)	476, 522, 535, 654
ApeKI	GCWGC	2 cut(s)	143, 617
ApoI	RAATTY	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	549
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	455
AvaII	GGWCC	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	677
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	184
BbvI	GCAGC	2 cut(s)	130, 604
BccI	CCATC	1 cut(s)	69
BciT130I	CCWGG	4 cut(s)	130, 177, 390, 503
BciVI	GTATCC	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	11
BfmI	CTRYAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	550
BfuI	GTATCC	1 cut(s)	105
BisI	GCNGC	2 cut(s)	144, 618
BlsI	GCNGC	2 cut(s)	145, 619
Bme1390I	CCNGG	4 cut(s)	130, 177, 390, 503
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	2 cut(s)	6, 378
BmrFI	CCNGG	4 cut(s)	130, 177, 390, 503
BmsI	GCATC	4 cut(s)	383, 414, 616, 620
BpmI	CTGGAG	1 cut(s)	198
Bsa29I	ATCGAT	1 cut(s)	435
BsaJI	CCNNGG	3 cut(s)	152, 351, 642
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	259, 380
Bse21I	CCTNAGG	1 cut(s)	677
BseBI	CCWGG	4 cut(s)	130, 177, 390, 503
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	3 cut(s)	152, 351, 642
BseGI	GGATG	4 cut(s)	91, 318, 361, 398
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	528
BseNI	ACTGG	2 cut(s)	259, 380
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	2 cut(s)	130, 604
BsgI	GTGCAG	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	435
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	544
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmAI	GTCTC	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	637
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	7 cut(s)	160, 432, 436, 481, 514, 540, 646
Bsp19I	CCATGG	1 cut(s)	642
BspACI	CCGC	3 cut(s)	274, 656, 682
BspCNI	CTCAG	1 cut(s)	529
BspDI	ATCGAT	1 cut(s)	435
BspLI	GGNNCC	2 cut(s)	6, 378
BspPI	GGATC	4 cut(s)	476, 522, 535, 654
BsrI	ACTGG	2 cut(s)	259, 380
BssECI	CCNNGG	3 cut(s)	152, 351, 642
BssMI	GATC	7 cut(s)	160, 432, 436, 481, 514, 540, 646
BssT1I	CCWWGG	3 cut(s)	152, 351, 642
Bst2UI	CCWGG	4 cut(s)	130, 177, 390, 503
Bst4CI	ACNGT	3 cut(s)	22, 200, 282
BstAPI	GCANNNNNTGC	1 cut(s)	617
BstDEI	CTNAG	2 cut(s)	537, 677
BstDSI	CCRYGG	1 cut(s)	642
BstF5I	GGATG	4 cut(s)	91, 318, 361, 398
BstH2I	RGCGCY	1 cut(s)	550
BstHHI	GCGC	1 cut(s)	549
BstKTI	GATC	7 cut(s)	163, 435, 439, 484, 517, 543, 649
BstMAI	GTCTC	1 cut(s)	11
BstMBI	GATC	7 cut(s)	160, 432, 436, 481, 514, 540, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	473, 617, 626
BstNI	CCWGG	4 cut(s)	130, 177, 390, 503
BstSCI	CCNGG	4 cut(s)	128, 175, 388, 501
BstSFI	CTRYAG	1 cut(s)	138
BstV1I	GCAGC	2 cut(s)	130, 604
BstX2I	RGATCY	3 cut(s)	514, 540, 646
BstXI	CCANNNNNNTGG	1 cut(s)	311
BstYI	RGATCY	3 cut(s)	514, 540, 646
Bsu15I	ATCGAT	1 cut(s)	435
Bsu36I	CCTNAGG	1 cut(s)	677
BsuI	GTATCC	1 cut(s)	105
BsuTUI	ATCGAT	1 cut(s)	435
BtgI	CCRYGG	1 cut(s)	642
BtsCI	GGATG	4 cut(s)	91, 318, 361, 398
CfoI	GCGC	1 cut(s)	549
Cfr13I	GGNCC	1 cut(s)	173
ClaI	ATCGAT	1 cut(s)	435
Csp6I	GTAC	1 cut(s)	283
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviAII	CATG	3 cut(s)	124, 158, 643
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	2 cut(s)	537, 677
DpnI	GATC	7 cut(s)	162, 434, 438, 483, 516, 542, 648
DpnII	GATC	7 cut(s)	160, 432, 436, 481, 514, 540, 646
DrdI	GACNNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	1 cut(s)	133
Ecl136II	GAGCTC	1 cut(s)	182
Eco130I	CCWWGG	3 cut(s)	152, 351, 642
Eco24I	GRGCYC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	1 cut(s)	182
Eco81I	CCTNAGG	1 cut(s)	677
EcoICRI	GAGCTC	1 cut(s)	182
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	4 cut(s)	128, 175, 388, 501
EcoT14I	CCWWGG	3 cut(s)	152, 351, 642
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	3 cut(s)	152, 351, 642
FaeI	CATG	3 cut(s)	127, 161, 646
FatI	CATG	3 cut(s)	123, 157, 642
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	144, 618
FokI	GGATG	4 cut(s)	78, 305, 368, 405
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	2 cut(s)	144, 618
GlaI	GCGC	1 cut(s)	548
GluI	GCNGC	2 cut(s)	144, 618
GsuI	CTGGAG	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	550
HapII	CCGG	1 cut(s)	544
HhaI	GCGC	1 cut(s)	549
Hin1II	CATG	3 cut(s)	127, 161, 646
Hin6I	GCGC	1 cut(s)	547
HinP1I	GCGC	1 cut(s)	547
HincII	GTYRAC	2 cut(s)	271, 595
HindII	GTYRAC	2 cut(s)	271, 595
HinfI	GANTC	2 cut(s)	56, 258
HpaII	CCGG	1 cut(s)	544
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	3 cut(s)	271, 298, 595
Hpy188I	TCNGA	1 cut(s)	27
Hpy188III	TCNNGA	3 cut(s)	164, 361, 485
Hpy8I	GTNNAC	3 cut(s)	271, 298, 595
HpyCH4III	ACNGT	3 cut(s)	22, 200, 282
HpyCH4V	TGCA	5 cut(s)	146, 373, 590, 611, 629
HpyF10VI	GCNNNNNNNGC	3 cut(s)	473, 617, 626
HpyF3I	CTNAG	2 cut(s)	537, 677
Hsp92II	CATG	3 cut(s)	127, 161, 646
HspAI	GCGC	1 cut(s)	547
Kzo9I	GATC	7 cut(s)	160, 432, 436, 481, 514, 540, 646
LmnI	GCTCC	4 cut(s)	10, 179, 187, 376
Lsp1109I	GCAGC	2 cut(s)	130, 604
LweI	GCATC	4 cut(s)	383, 414, 616, 620
MalI	GATC	7 cut(s)	162, 434, 438, 483, 516, 542, 648
MboI	GATC	7 cut(s)	160, 432, 436, 481, 514, 540, 646
MboII	GAAGA	2 cut(s)	111, 392
MfeI	CAATTG	1 cut(s)	12
MflI	RGATCY	3 cut(s)	514, 540, 646
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	3 cut(s)	12, 210, 462
MlyI	GAGTC	2 cut(s)	50, 252
MnlI	CCTC	9 cut(s)	48, 51, 97, 102, 108, 126, 331, 550, 686
MseI	TTAA	1 cut(s)	102
MslI	CAYNNNNRTG	1 cut(s)	309
MspI	CCGG	1 cut(s)	544
MspR9I	CCNGG	4 cut(s)	130, 177, 390, 503
MunI	CAATTG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	637
MvaI	CCWGG	4 cut(s)	130, 177, 390, 503
MwoI	GCNNNNNNNGC	3 cut(s)	473, 617, 626
NcoI	CCATGG	1 cut(s)	642
NdeII	GATC	7 cut(s)	160, 432, 436, 481, 514, 540, 646
NlaIII	CATG	3 cut(s)	127, 161, 646
NlaIV	GGNNCC	2 cut(s)	6, 378
PctI	GAATGC	1 cut(s)	637
PfoI	TCCNGGA	1 cut(s)	388
PkrI	GCNGC	2 cut(s)	145, 619
PleI	GAGTC	2 cut(s)	50, 252
PpsI	GAGTC	2 cut(s)	50, 252
PpuMI	RGGWCCY	1 cut(s)	173
Psp124BI	GAGCTC	1 cut(s)	184
Psp5II	RGGWCCY	1 cut(s)	173
Psp6I	CCWGG	4 cut(s)	128, 175, 388, 501
PspGI	CCWGG	4 cut(s)	128, 175, 388, 501
PspN4I	GGNNCC	2 cut(s)	6, 378
PspPI	GGNCC	1 cut(s)	173
PspPPI	RGGWCCY	1 cut(s)	173
PsuI	RGATCY	3 cut(s)	514, 540, 646
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	1 cut(s)	309
SacI	GAGCTC	1 cut(s)	184
SaqAI	TTAA	1 cut(s)	102
SatI	GCNGC	2 cut(s)	144, 618
Sau3AI	GATC	7 cut(s)	160, 432, 436, 481, 514, 540, 646
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	2 cut(s)	50, 252
ScrFI	CCNGG	4 cut(s)	130, 177, 390, 503
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	8 cut(s)	100, 137, 145, 178, 184, 243, 270, 415
SfaNI	GCATC	4 cut(s)	383, 414, 616, 620
SfcI	CTRYAG	1 cut(s)	138
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	309
Sse9I	AATT	3 cut(s)	12, 210, 462
SsiI	CCGC	3 cut(s)	274, 656, 682
SstI	GAGCTC	1 cut(s)	184
StyD4I	CCNGG	4 cut(s)	128, 175, 388, 501
StyI	CCWWGG	3 cut(s)	152, 351, 642
TaaI	ACNGT	3 cut(s)	22, 200, 282
TaqI	TCGA	2 cut(s)	54, 435
TasI	AATT	3 cut(s)	12, 210, 462
TatI	WGTACW	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	102
Tru9I	TTAA	1 cut(s)	102
TseI	GCWGC	2 cut(s)	143, 617
TspDTI	ATGAA	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	210
XmiI	GTMKAC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.