Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007013

Physical Location & Seq

Genomic Coordinates Forward (+)

15676130 .. 15679476

Gene Structure 3347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g13180.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGAGCACCAAAACTTGGGAAATTTTCCCTTTAATTTTTCATTTATTTTATTTTATTTATTTATTTATTTCCTTTAAATGGGAAAGCACAAAGATAGCGGGAACACGTACAGCTGCTTATTCCTTTCCTATTCTGCTTGAGCCCCATTCACTCCTCCTCCTTCCGCTCTTTCAATTTTTGAGATCTGCGCTCTCTTCCTCTCGAAGCTTCCTCCTCGCTCCGCCGACGGATTTGCAGTTCCGTTCCTCCGCCGATATGGTTCCACCAATTGAGACAGTTCAGAAAGTTGAGCCTCCTCAAAAAGTTGTTGAACCCCATGTCACCTATCATCATGATCATTCCTCACATCCACCTCTAAATGAGAGGATACTTTCATCCATGACCAGAAGGTCTATTGCTGCTCACCCGTGGCATGACCTTGAAATCGGACCTGGAGCTCCTAAGATTTTCAACTGTGTTATCGAAATCCCAAAAGGAAGCAAGGTGAAATATGAGCTTGACAAGAAAACTGGACTCATCAAGGTTGACCGAATATTGTACTCATCTGTTGTCTACCCCCACAACTATGGCTTCATCCCCCGTACCCTTTGTGAGGACAATGATCCCTTGGATGTCTTGATTATTATGCAGGAGCCAGTTGTTCCTGGGTGCTTTCTTCGTGCCAAAGCTATTGGCCTGATGCCTATGATTGATCAGGTGAGAAAGATGACAAGATCGATTGCTGTTTGTGCTGATGATCCTGAGTACCGACACTACAATGACATCAAGGAGCTCCCACCTCACCGTTTGGCTGAGATCCGGCGCTTCTTTGAGGACTACAAGAAAAATGAGAACAAAGAAGTTGCAGTTGACGACTTTCTCCCTGCAGCTACTGCCTTTGACGCAGTCCAGCATTCCATGAACCTCTATGCGGACTACATTGTGGAGAGCCTCAGGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

314

Amino Acids

36.07

Weight (kDa)

6.9

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53620
fragaria_vesca	FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350
malus_domestica	MD04G1120600.v1.1 MD12G1137900.v1.1
prunus_persica	Prupe.6G249900_v2.0.a1
pyrus_communis	pycom04g10970 pycom12g13180
rosa_chinensis	RchiOBHm_Chr3g0467401
rosa_laevigata	RLG00000024507
rosa_multiflora	Rmu_sc0001601.1_g000012 Rmu_sc0012351.1_g000009
rosa_roxburghii	Rroxscaffold_6G00413700
rosa_rugosa	Rorug03G0086500 Rorug03G0086600 Rorug03G0086700
rosa_samantha	Rh3AG135300 Rh3BG156800 Rh3CG156600 Rh3DG157600
rosa_wichuraiana	Rw3G012830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	388
AccB7I	CCANNNNNTGG	1 cut(s)	15
AccBSI	CCGCTC	1 cut(s)	166
AccI	GTMKAC	1 cut(s)	552
AciI	CCGC	5 cut(s)	98, 164, 221, 249, 911
AclWI	GGATC	3 cut(s)	596, 731, 790
AcsI	RAATTY	1 cut(s)	21
AfaI	GTAC	4 cut(s)	109, 539, 583, 746
AfiI	CCNNNNNNNGG	4 cut(s)	15, 78, 592, 910
AflIII	ACRYGT	1 cut(s)	104
AgsI	TTSAA	4 cut(s)	173, 311, 422, 451
AjnI	CCWGG	2 cut(s)	430, 643
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	7 cut(s)	113, 207, 437, 496, 668, 772, 869
AluI	AGCT	7 cut(s)	113, 207, 437, 496, 668, 772, 869
Alw21I	GWGCWC	3 cut(s)	8, 439, 774
Alw26I	GTCTC	1 cut(s)	266
AlwI	GGATC	3 cut(s)	596, 731, 790
AlwNI	CAGNNNCTG	1 cut(s)	872
AoxI	GGCC	1 cut(s)	673
ApeKI	GCWGC	3 cut(s)	113, 398, 866
ApoI	RAATTY	1 cut(s)	21
AspLEI	GCGC	2 cut(s)	190, 804
AspS9I	GGNCC	1 cut(s)	428
AsuHPI	GGTGA	5 cut(s)	313, 395, 496, 709, 773
AvaII	GGWCC	1 cut(s)	428
AxyI	CCTNAGG	1 cut(s)	932
BanII	GRGCYC	3 cut(s)	144, 439, 774
Bbv12I	GWGCWC	3 cut(s)	8, 439, 774
BbvI	GCAGC	3 cut(s)	100, 385, 878
BcgI	CGANNNNNNTGC	2 cut(s)	214, 248
BciT130I	CCWGG	2 cut(s)	432, 645
BciVI	GTATCC	1 cut(s)	360
BclI	TGATCA	2 cut(s)	334, 691
BcoDI	GTCTC	1 cut(s)	266
BfmI	CTRYAG	1 cut(s)	864
BfoI	RGCGCY	1 cut(s)	805
BfuI	GTATCC	1 cut(s)	360
BglII	AGATCT	1 cut(s)	182
BisI	GCNGC	3 cut(s)	114, 399, 867
BlsI	GCNGC	3 cut(s)	115, 400, 868
Bme1390I	CCNGG	2 cut(s)	432, 645
Bme18I	GGWCC	1 cut(s)	428
BmgT120I	GGNCC	1 cut(s)	428
BmiI	GGNNCC	2 cut(s)	261, 633
BmrFI	CCNGG	2 cut(s)	432, 645
BmsI	GCATC	1 cut(s)	669
BpmI	CTGGAG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	158
Bsa29I	ATCGAT	1 cut(s)	716
BsaAI	YACGTR	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	407, 606, 644
BsaXI	ACNNNNNCTCC	2 cut(s)	141, 171
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 78, 592, 910
Bse1I	ACTGG	2 cut(s)	514, 635
Bse21I	CCTNAGG	1 cut(s)	932
BseBI	CCWGG	2 cut(s)	432, 645
BseCI	ATCGAT	1 cut(s)	716
BseDI	CCNNGG	3 cut(s)	407, 606, 644
BseGI	GGATG	4 cut(s)	346, 374, 573, 616
BseLI	CCNNNNNNNGG	4 cut(s)	15, 78, 592, 910
BseMII	CTCAG	2 cut(s)	732, 783
BseNI	ACTGG	2 cut(s)	514, 635
BseRI	GAGGAG	4 cut(s)	143, 146, 203, 285
BseXI	GCAGC	3 cut(s)	100, 385, 878
BshFI	GGCC	1 cut(s)	675
BshVI	ATCGAT	1 cut(s)	716
BsiHKAI	GWGCWC	3 cut(s)	8, 439, 774
BsiSI	CCGG	1 cut(s)	799
BslI	CCNNNNNNNGG	4 cut(s)	15, 78, 592, 910
BsmAI	GTCTC	1 cut(s)	266
BsmI	GAATGC	1 cut(s)	892
BsnI	GGCC	1 cut(s)	675
Bsp1286I	GDGCHC	4 cut(s)	8, 144, 439, 774
Bsp143I	GATC	7 cut(s)	182, 334, 601, 691, 713, 736, 795
BspACI	CCGC	5 cut(s)	98, 164, 221, 249, 911
BspANI	GGCC	1 cut(s)	675
BspCNI	CTCAG	2 cut(s)	733, 784
BspDI	ATCGAT	1 cut(s)	716
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	2 cut(s)	261, 633
BspMAI	CTGCAG	1 cut(s)	868
BspPI	GGATC	3 cut(s)	596, 731, 790
BsrBI	CCGCTC	1 cut(s)	166
BsrI	ACTGG	2 cut(s)	514, 635
BssECI	CCNNGG	3 cut(s)	407, 606, 644
BssMI	GATC	7 cut(s)	182, 334, 601, 691, 713, 736, 795
BssT1I	CCWWGG	1 cut(s)	606
Bst2UI	CCWGG	2 cut(s)	432, 645
Bst4CI	ACNGT	3 cut(s)	277, 455, 785
Bst6I	CTCTTC	1 cut(s)	199
BstAPI	GCANNNNNTGC	1 cut(s)	872
BstBAI	YACGTR	1 cut(s)	107
BstDEI	CTNAG	4 cut(s)	441, 741, 792, 932
BstDSI	CCRYGG	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	590
BstF5I	GGATG	4 cut(s)	346, 374, 573, 616
BstH2I	RGCGCY	1 cut(s)	805
BstHHI	GCGC	2 cut(s)	190, 804
BstKTI	GATC	7 cut(s)	185, 337, 604, 694, 716, 739, 798
BstMAI	GTCTC	1 cut(s)	266
BstMBI	GATC	7 cut(s)	182, 334, 601, 691, 713, 736, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	728, 872, 881
BstNI	CCWGG	2 cut(s)	432, 645
BstSCI	CCNGG	2 cut(s)	430, 643
BstSFI	CTRYAG	1 cut(s)	864
BstV1I	GCAGC	3 cut(s)	100, 385, 878
BstX2I	RGATCY	2 cut(s)	182, 795
BstXI	CCANNNNNNTGG	1 cut(s)	566
BstYI	RGATCY	2 cut(s)	182, 795
Bsu15I	ATCGAT	1 cut(s)	716
Bsu36I	CCTNAGG	1 cut(s)	932
BsuI	GTATCC	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	675
BsuTUI	ATCGAT	1 cut(s)	716
BtgI	CCRYGG	1 cut(s)	407
BtsCI	GGATG	4 cut(s)	346, 374, 573, 616
CaiI	CAGNNNCTG	1 cut(s)	872
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	2 cut(s)	190, 804
Cfr13I	GGNCC	1 cut(s)	428
ClaI	ATCGAT	1 cut(s)	716
CseI	GACGC	1 cut(s)	890
Csp6I	GTAC	4 cut(s)	108, 538, 582, 745
CviAII	CATG	5 cut(s)	317, 332, 379, 413, 898
CviQI	GTAC	4 cut(s)	108, 538, 582, 745
DdeI	CTNAG	4 cut(s)	441, 741, 792, 932
DpnI	GATC	7 cut(s)	184, 336, 603, 693, 715, 738, 797
DpnII	GATC	7 cut(s)	182, 334, 601, 691, 713, 736, 795
DraI	TTTAAA	1 cut(s)	76
DrdI	GACNNNNNNGTC	1 cut(s)	388
DseDI	GACNNNNNNGTC	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	199
EarI	CTCTTC	1 cut(s)	199
EciI	GGCGGA	2 cut(s)	210, 238
Ecl136II	GAGCTC	2 cut(s)	437, 772
Eco130I	CCWWGG	1 cut(s)	606
Eco24I	GRGCYC	3 cut(s)	144, 439, 774
Eco47I	GGWCC	1 cut(s)	428
Eco53kI	GAGCTC	2 cut(s)	437, 772
Eco81I	CCTNAGG	1 cut(s)	932
EcoICRI	GAGCTC	2 cut(s)	437, 772
EcoNI	CCTNNNNNAGG	1 cut(s)	590
EcoRII	CCWGG	2 cut(s)	430, 643
EcoT14I	CCWWGG	1 cut(s)	606
EcoT38I	GRGCYC	3 cut(s)	144, 439, 774
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	5 cut(s)	320, 335, 382, 416, 901
FatI	CATG	5 cut(s)	316, 331, 378, 412, 897
FauI	CCCGC	1 cut(s)	91
FbaI	TGATCA	2 cut(s)	334, 691
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	3 cut(s)	114, 399, 867
FokI	GGATG	4 cut(s)	333, 361, 560, 623
FriOI	GRGCYC	3 cut(s)	144, 439, 774
Fsp4HI	GCNGC	3 cut(s)	114, 399, 867
GlaI	GCGC	2 cut(s)	189, 803
GluI	GCNGC	3 cut(s)	114, 399, 867
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	805
HaeIII	GGCC	1 cut(s)	675
HapII	CCGG	1 cut(s)	799
HgaI	GACGC	1 cut(s)	890
HhaI	GCGC	2 cut(s)	190, 804
Hin1II	CATG	5 cut(s)	320, 335, 382, 416, 901
Hin6I	GCGC	2 cut(s)	188, 802
HinP1I	GCGC	2 cut(s)	188, 802
HincII	GTYRAC	2 cut(s)	526, 850
HindII	GTYRAC	2 cut(s)	526, 850
HindIII	AAGCTT	1 cut(s)	205
HinfI	GANTC	1 cut(s)	513
HpaII	CCGG	1 cut(s)	799
HphI	GGTGA	5 cut(s)	313, 395, 496, 709, 773
Hpy166II	GTNNAC	3 cut(s)	526, 553, 850
Hpy188I	TCNGA	2 cut(s)	282, 428
Hpy188III	TCNNGA	5 cut(s)	201, 332, 616, 740, 934
Hpy8I	GTNNAC	3 cut(s)	526, 553, 850
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	2 cut(s)	170, 381
HpyCH4III	ACNGT	3 cut(s)	277, 455, 785
HpyCH4IV	ACGT	1 cut(s)	106
HpyCH4V	TGCA	4 cut(s)	235, 628, 845, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	728, 872, 881
HpyF3I	CTNAG	4 cut(s)	441, 741, 792, 932
HpySE526I	ACGT	1 cut(s)	106
Hsp92II	CATG	5 cut(s)	320, 335, 382, 416, 901
HspAI	GCGC	2 cut(s)	188, 802
Ksp22I	TGATCA	2 cut(s)	334, 691
Kzo9I	GATC	7 cut(s)	182, 334, 601, 691, 713, 736, 795
LmnI	GCTCC	6 cut(s)	223, 434, 442, 631, 769, 777
Lsp1109I	GCAGC	3 cut(s)	100, 385, 878
LweI	GCATC	1 cut(s)	669
MaeII	ACGT	1 cut(s)	106
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	7 cut(s)	184, 336, 603, 693, 715, 738, 797
MbiI	CCGCTC	1 cut(s)	166
MboI	GATC	7 cut(s)	182, 334, 601, 691, 713, 736, 795
MboII	GAAGA	2 cut(s)	186, 647
MfeI	CAATTG	1 cut(s)	267
MflI	RGATCY	2 cut(s)	182, 795
MhlI	GDGCHC	4 cut(s)	8, 144, 439, 774
MluCI	AATT	4 cut(s)	21, 33, 173, 267
MlyI	GAGTC	1 cut(s)	507
MseI	TTAA	2 cut(s)	32, 75
MslI	CAYNNNNRTG	2 cut(s)	564, 756
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	1 cut(s)	799
MspR9I	CCNGG	2 cut(s)	432, 645
MunI	CAATTG	1 cut(s)	267
Mva1269I	GAATGC	1 cut(s)	892
MvaI	CCWGG	2 cut(s)	432, 645
MwoI	GCNNNNNNNGC	3 cut(s)	728, 872, 881
NdeII	GATC	7 cut(s)	182, 334, 601, 691, 713, 736, 795
NlaIII	CATG	5 cut(s)	320, 335, 382, 416, 901
NlaIV	GGNNCC	2 cut(s)	261, 633
NmuCI	GTSAC	1 cut(s)	319
PagI	TCATGA	1 cut(s)	331
PctI	GAATGC	1 cut(s)	892
PflFI	GACNNNGTC	1 cut(s)	884
PflMI	CCANNNNNTGG	1 cut(s)	15
PkrI	GCNGC	3 cut(s)	115, 400, 868
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Ppu21I	YACGTR	1 cut(s)	107
Psp124BI	GAGCTC	2 cut(s)	439, 774
Psp6I	CCWGG	2 cut(s)	430, 643
PspGI	CCWGG	2 cut(s)	430, 643
PspN4I	GGNNCC	2 cut(s)	261, 633
PspPI	GGNCC	1 cut(s)	428
PstI	CTGCAG	1 cut(s)	868
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	2 cut(s)	182, 795
PsyI	GACNNNGTC	1 cut(s)	884
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	4 cut(s)	109, 539, 583, 746
RsaNI	GTAC	4 cut(s)	108, 538, 582, 745
RseI	CAYNNNNRTG	2 cut(s)	564, 756
SacI	GAGCTC	2 cut(s)	439, 774
SaqAI	TTAA	2 cut(s)	32, 75
SatI	GCNGC	3 cut(s)	114, 399, 867
Sau3AI	GATC	7 cut(s)	182, 334, 601, 691, 713, 736, 795
Sau96I	GGNCC	1 cut(s)	428
SchI	GAGTC	1 cut(s)	507
ScrFI	CCNGG	2 cut(s)	432, 645
SduI	GDGCHC	4 cut(s)	8, 144, 439, 774
SfaNI	GCATC	1 cut(s)	669
SfcI	CTRYAG	1 cut(s)	864
SinI	GGWCC	1 cut(s)	428
SmiMI	CAYNNNNRTG	2 cut(s)	564, 756
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	4 cut(s)	21, 33, 173, 267
SsiI	CCGC	5 cut(s)	98, 164, 221, 249, 911
SspI	AATATT	1 cut(s)	534
SstI	GAGCTC	2 cut(s)	439, 774
StyD4I	CCNGG	2 cut(s)	430, 643
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	3 cut(s)	277, 455, 785
TaiI	ACGT	1 cut(s)	109
TaqI	TCGA	3 cut(s)	202, 462, 716
TaqII	GACCGA	1 cut(s)	543
TasI	AATT	4 cut(s)	21, 33, 173, 267
TatI	WGTACW	1 cut(s)	537
Tru1I	TTAA	2 cut(s)	32, 75
Tru9I	TTAA	2 cut(s)	32, 75
TseFI	GTSAC	1 cut(s)	319
TseI	GCWGC	3 cut(s)	113, 398, 866
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	4 cut(s)	29, 363, 562, 914
TspGWI	ACGGA	2 cut(s)	230, 242
Tth111I	GACNNNGTC	1 cut(s)	884
Van91I	CCANNNNNTGG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	428
XagI	CCTNNNNNAGG	1 cut(s)	590
XapI	RAATTY	1 cut(s)	21
XmiI	GTMKAC	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.