Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012351.1

Orthogroup ID

OG0007013

Physical Location & Seq

Genomic Coordinates Reverse (-)

43504 .. 45684

Gene Structure 2181 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012351.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atggctccacccattgaggctactcaaacagttactgagattccccaaaaagttgctgaagttcctaagaaagttactgagactccccacaagggtagcaaccattattcctcacatcctcctcttaatgagaggatactttcttccatgaccaggaggtctatagctgcacacccttggcatgatcttgaaataggacctgatactccaaagatctttaactgtgttatagaaattggaaaaggaagcaaggtgaaatatgaacttgacaaaaaaactggacttatcaaggttgaccgtatactgtactcatctgttgtctaccctcacaactatggcttcatcccccgtacgctttgtgaggacaatgaccccttggatgtcttgattattatgcaggagccagttcttcctggatgctttcttcgggctaaagctattggcctgatgcccatgattgatcagggtgagaaagatgacaagatcattgctgtttgtgctgatgatcctgaataccgtcattacaatgacatcaaggagctgccaccacatcgtttggctgagatccgtcgcttctttgaggactacaagaaaaatgagaacaaggaggttttagttgatgactttctccctgcatctgctgcctttgaaagtatccagcagtccatggatctttatgcggactacattgtggagagcctcaggcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

236

Amino Acids

26.94

Weight (kDa)

5.65

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53620
fragaria_vesca	FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350
malus_domestica	MD04G1120600.v1.1 MD12G1137900.v1.1
prunus_persica	Prupe.6G249900_v2.0.a1
pyrus_communis	pycom04g10970 pycom12g13180
rosa_chinensis	RchiOBHm_Chr3g0467401
rosa_laevigata	RLG00000024507
rosa_multiflora	Rmu_sc0001601.1_g000012 Rmu_sc0012351.1_g000009
rosa_roxburghii	Rroxscaffold_6G00413700
rosa_rugosa	Rorug03G0086500 Rorug03G0086600 Rorug03G0086700
rosa_samantha	Rh3AG135300 Rh3BG156800 Rh3CG156600 Rh3DG157600
rosa_wichuraiana	Rw3G012830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	157
AccI	GTMKAC	2 cut(s)	301, 321
AciI	CCGC	2 cut(s)	680, 706
AclWI	GGATC	3 cut(s)	500, 559, 678
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	2 cut(s)	308, 352
AfiI	CCNNNNNNNGG	2 cut(s)	92, 153
AgsI	TTSAA	2 cut(s)	191, 650
AjnI	CCWGG	2 cut(s)	152, 412
AluBI	AGCT	3 cut(s)	167, 437, 541
AluI	AGCT	3 cut(s)	167, 437, 541
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	3 cut(s)	500, 559, 678
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	3 cut(s)	167, 541, 641
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	265, 479
AvaII	GGWCC	1 cut(s)	197
AxyI	CCTNAGG	1 cut(s)	701
BbvI	GCAGC	3 cut(s)	154, 528, 628
BciT130I	CCWGG	2 cut(s)	154, 414
BciVI	GTATCC	2 cut(s)	129, 665
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	162
BfuI	GTATCC	2 cut(s)	129, 665
BglII	AGATCT	1 cut(s)	213
BisI	GCNGC	3 cut(s)	168, 542, 642
BlsI	GCNGC	3 cut(s)	169, 543, 643
Bme1390I	CCNGG	2 cut(s)	154, 414
Bme18I	GGWCC	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	6, 402
BmrFI	CCNGG	2 cut(s)	154, 414
BmsI	GCATC	3 cut(s)	407, 438, 644
BsaJI	CCNNGG	3 cut(s)	176, 375, 666
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 153
Bse1I	ACTGG	2 cut(s)	283, 404
Bse21I	CCTNAGG	1 cut(s)	701
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	2 cut(s)	154, 414
BseDI	CCNNGG	3 cut(s)	176, 375, 666
BseGI	GGATG	4 cut(s)	115, 342, 385, 422
BseLI	CCNNNNNNNGG	2 cut(s)	92, 153
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	3 cut(s)	27, 69, 552
BseNI	ACTGG	2 cut(s)	283, 404
BseRI	GAGGAG	1 cut(s)	111
BseXI	GCAGC	3 cut(s)	154, 528, 628
BsgI	GTGCAG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	444
BsiWI	CGTACG	1 cut(s)	350
BslI	CCNNNNNNNGG	2 cut(s)	92, 153
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	444
Bsp143I	GATC	7 cut(s)	184, 213, 460, 483, 505, 564, 670
Bsp19I	CCATGG	1 cut(s)	666
BspACI	CCGC	2 cut(s)	680, 706
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	3 cut(s)	28, 70, 553
BspLI	GGNNCC	2 cut(s)	6, 402
BspPI	GGATC	3 cut(s)	500, 559, 678
BsrDI	GCAATG	1 cut(s)	486
BsrI	ACTGG	2 cut(s)	283, 404
BssECI	CCNNGG	3 cut(s)	176, 375, 666
BssMI	GATC	7 cut(s)	184, 213, 460, 483, 505, 564, 670
BssNAI	GTATAC	1 cut(s)	302
BssT1I	CCWWGG	3 cut(s)	176, 375, 666
Bst1107I	GTATAC	1 cut(s)	302
Bst2UI	CCWGG	2 cut(s)	154, 414
Bst4CI	ACNGT	5 cut(s)	31, 224, 299, 306, 518
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstDEI	CTNAG	5 cut(s)	36, 66, 78, 561, 701
BstDSI	CCRYGG	1 cut(s)	666
BstF5I	GGATG	4 cut(s)	115, 342, 385, 422
BstKTI	GATC	7 cut(s)	187, 216, 463, 486, 508, 567, 673
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	7 cut(s)	184, 213, 460, 483, 505, 564, 670
BstMWI	GCNNNNNNNGC	2 cut(s)	497, 641
BstNI	CCWGG	2 cut(s)	154, 414
BstSCI	CCNGG	2 cut(s)	152, 412
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	3 cut(s)	154, 528, 628
BstX2I	RGATCY	3 cut(s)	213, 564, 670
BstYI	RGATCY	3 cut(s)	213, 564, 670
BstZ17I	GTATAC	1 cut(s)	302
Bsu36I	CCTNAGG	1 cut(s)	701
BsuI	GTATCC	2 cut(s)	129, 665
BsuRI	GGCC	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	666
BtsCI	GGATG	4 cut(s)	115, 342, 385, 422
CaiI	CAGNNNCTG	1 cut(s)	35
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	307, 351
CspCI	CAANNNNNGTGG	2 cut(s)	537, 572
CviAII	CATG	4 cut(s)	148, 182, 454, 667
CviQI	GTAC	2 cut(s)	307, 351
DdeI	CTNAG	5 cut(s)	36, 66, 78, 561, 701
DpnI	GATC	7 cut(s)	186, 215, 462, 485, 507, 566, 672
DpnII	GATC	7 cut(s)	184, 213, 460, 483, 505, 564, 670
DrdI	GACNNNNNNGTC	1 cut(s)	157
DseDI	GACNNNNNNGTC	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	176, 375, 666
Eco47I	GGWCC	1 cut(s)	197
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	701
EcoO109I	RGGNCCY	1 cut(s)	197
EcoRII	CCWGG	2 cut(s)	152, 412
EcoT14I	CCWWGG	3 cut(s)	176, 375, 666
ErhI	CCWWGG	3 cut(s)	176, 375, 666
FaeI	CATG	4 cut(s)	151, 185, 457, 670
FatI	CATG	4 cut(s)	147, 181, 453, 666
FbaI	TGATCA	1 cut(s)	460
FblI	GTMKAC	2 cut(s)	301, 321
Fnu4HI	GCNGC	3 cut(s)	168, 542, 642
FokI	GGATG	4 cut(s)	102, 329, 392, 429
Fsp4HI	GCNGC	3 cut(s)	168, 542, 642
GluI	GCNGC	3 cut(s)	168, 542, 642
HaeIII	GGCC	1 cut(s)	444
Hin1II	CATG	4 cut(s)	151, 185, 457, 670
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	40, 82
HphI	GGTGA	2 cut(s)	265, 479
Hpy166II	GTNNAC	3 cut(s)	295, 302, 322
Hpy188III	TCNNGA	3 cut(s)	188, 385, 509
Hpy8I	GTNNAC	3 cut(s)	295, 302, 322
Hpy99I	CGWCG	1 cut(s)	573
HpyCH4III	ACNGT	5 cut(s)	31, 224, 299, 306, 518
HpyCH4V	TGCA	3 cut(s)	170, 397, 635
HpyF10VI	GCNNNNNNNGC	2 cut(s)	497, 641
HpyF3I	CTNAG	5 cut(s)	36, 66, 78, 561, 701
Hsp92II	CATG	4 cut(s)	151, 185, 457, 670
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	7 cut(s)	184, 213, 460, 483, 505, 564, 670
LmnI	GCTCC	3 cut(s)	10, 400, 538
Lsp1109I	GCAGC	3 cut(s)	154, 528, 628
LweI	GCATC	3 cut(s)	407, 438, 644
MaeIII	GTNAC	2 cut(s)	31, 73
MalI	GATC	7 cut(s)	186, 215, 462, 485, 507, 566, 672
MboI	GATC	7 cut(s)	184, 213, 460, 483, 505, 564, 670
MboII	GAAGA	3 cut(s)	135, 401, 416
MflI	RGATCY	3 cut(s)	213, 564, 670
MluCI	AATT	1 cut(s)	234
MlyI	GAGTC	1 cut(s)	76
MseI	TTAA	2 cut(s)	126, 219
MslI	CAYNNNNRTG	2 cut(s)	333, 525
MspR9I	CCNGG	2 cut(s)	154, 414
MvaI	CCWGG	2 cut(s)	154, 414
MwoI	GCNNNNNNNGC	2 cut(s)	497, 641
NcoI	CCATGG	1 cut(s)	666
NdeII	GATC	7 cut(s)	184, 213, 460, 483, 505, 564, 670
NlaIII	CATG	4 cut(s)	151, 185, 457, 670
NlaIV	GGNNCC	2 cut(s)	6, 402
PfeI	GAWTC	1 cut(s)	40
Pfl23II	CGTACG	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	412
PkrI	GCNGC	3 cut(s)	169, 543, 643
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	197
Psp6I	CCWGG	2 cut(s)	152, 412
PspGI	CCWGG	2 cut(s)	152, 412
PspLI	CGTACG	1 cut(s)	350
PspN4I	GGNNCC	2 cut(s)	6, 402
PspPI	GGNCC	1 cut(s)	197
PspPPI	RGGWCCY	1 cut(s)	197
PstNI	CAGNNNCTG	1 cut(s)	35
PsuI	RGATCY	3 cut(s)	213, 564, 670
RsaI	GTAC	2 cut(s)	308, 352
RsaNI	GTAC	2 cut(s)	307, 351
RseI	CAYNNNNRTG	2 cut(s)	333, 525
SaqAI	TTAA	2 cut(s)	126, 219
SatI	GCNGC	3 cut(s)	168, 542, 642
Sau3AI	GATC	7 cut(s)	184, 213, 460, 483, 505, 564, 670
Sau96I	GGNCC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	154, 414
SetI	ASST	8 cut(s)	161, 169, 202, 255, 294, 439, 543, 612
SfaNI	GCATC	3 cut(s)	407, 438, 644
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	1 cut(s)	197
SmiMI	CAYNNNNRTG	2 cut(s)	333, 525
Sse9I	AATT	1 cut(s)	234
SsiI	CCGC	2 cut(s)	680, 706
StyD4I	CCNGG	2 cut(s)	152, 412
StyI	CCWWGG	3 cut(s)	176, 375, 666
TaaI	ACNGT	5 cut(s)	31, 224, 299, 306, 518
TasI	AATT	1 cut(s)	234
TatI	WGTACW	1 cut(s)	306
TfiI	GAWTC	1 cut(s)	40
Tru1I	TTAA	2 cut(s)	126, 219
Tru9I	TTAA	2 cut(s)	126, 219
TseI	GCWGC	3 cut(s)	167, 541, 641
TspDTI	ATGAA	2 cut(s)	276, 331
TspGWI	ACGGA	1 cut(s)	557
VpaK11BI	GGWCC	1 cut(s)	197
XmiI	GTMKAC	2 cut(s)	301, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.