RLG00000024507

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0007013
Physical Location & Seq
Forward (+)
36537803 .. 36541617
3815 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024507

Sequence Viewer

Length: 1035 bp
ATGCGCTACACGACCGTTAGGAACACCGTCTTTGTCCGAAGTTGGGGTCCATTGGTGGCCAGTGAGGAGTTGACACGGGAGAAAATTGAAATTCCTTGTTTAATTGTTTTCTCGCCTTTAAATGGCAGAGAAGAAAGAGAGCGGGAACACGTACAGCTCCTCCTTATTGCTTTCCTCCTCTACTTAAGCGCCCCCATAACTACTCCATTCCCATTCCTCTCTCTTTTTCTCTCTTTGAGATCTGTGCTGTTCTTCTTCTTCTTCTTCGTCTCCGGCGAGGCTTTGCGCCGATCCTTTGCAGTAATGGCTCCACCCATTGAGGCTACTCAAACAGTTACTGAGATTCCCCAGAAAGTTACTGAAATTCCTAAGACAGTTGCTGAAGTTCCCAAGAAAGTTACCGAGGCTCCCCACAAGGGTAGCAATCATTATTCCTCACATCCTCCTCTTAATGAGAGGATACTTTCTTCCATGACCAGGAGGTCTATAGCTGCACACCCTTGGCATGATCTTGAAATAGGACCTGATACTCCAAAGATCTTTAACTGTGTTATTGAAATCGGAAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAAAACTGGACTTATCAAGGTTGACCGTATACTGTACTCATCTGTTGTCTACCCTCACAACTATGGCTTCATCCCCCGTACACTCTGTGAGGACAATGACCCCTTGGATGTCTTGATTATTATGCAGGAGCCAGTTCTTCCTGGATGCTTTCTTCGGGCTAAAGCTATTGGGCTGATGCCCATGATTGATCAGGGTGAGAAAGATGACAAGATCATTGCTGTTTGTGCTGATGATCCTGAATACCGTCACTACAATGACATCAAGGAGCTGCCACCACATCGTTTGGCTGAGATCCGTCGCTTCTTTGAGGACTACAAGAAAAATGAGAACAAGAAGGTTTTAGTTGACGACTTTCTCCCTGCATCTGCTGCCTTTGAAAGTGTCCAGCAGTCCATGGATCTTTATGCGGACTACATTGTGGAGAGCCTCAGGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

345

Amino Acids

39.44

Weight (kDa)

6.34

Isoelectric Point (pI)

49.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 183 - 334 1.3e-57 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 481
AccBSI CCGCTC 1 cut(s) 142
AccI GTMKAC 2 cut(s) 625, 645
AciI CCGC 3 cut(s) 142, 1004, 1030
AclWI GGATC 4 cut(s) 285, 824, 883, 1002
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 2 cut(s) 90, 363
AcuI CTGAAG 1 cut(s) 402
AdeI CACNNNGTG 1 cut(s) 683
AfaI GTAC 3 cut(s) 153, 632, 676
AfiI CCNNNNNNNGG 4 cut(s) 43, 122, 416, 477
AflII CTTAAG 1 cut(s) 184
AflIII ACRYGT 1 cut(s) 148
AgsI TTSAA 4 cut(s) 89, 515, 557, 974
AjnI CCWGG 2 cut(s) 476, 736
AluBI AGCT 4 cut(s) 157, 491, 761, 865
AluI AGCT 4 cut(s) 157, 491, 761, 865
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 4 cut(s) 285, 824, 883, 1002
AlwNI CAGNNNCTG 2 cut(s) 338, 380
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 491, 865, 965
ApoI RAATTY 2 cut(s) 90, 363
ArsI GACNNNNNNTTYG 2 cut(s) 31, 63
AspLEI GCGC 3 cut(s) 6, 191, 288
AspS9I GGNCC 2 cut(s) 47, 521
AsuHPI GGTGA 2 cut(s) 589, 803
AvaII GGWCC 2 cut(s) 47, 521
AxyI CCTNAGG 1 cut(s) 1025
BalI TGGCCA 1 cut(s) 59
BbvI GCAGC 3 cut(s) 478, 852, 952
BciT130I CCWGG 2 cut(s) 478, 738
BciVI GTATCC 1 cut(s) 453
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 486
BfoI RGCGCY 1 cut(s) 192
BfrI CTTAAG 1 cut(s) 184
BfuI GTATCC 1 cut(s) 453
BglII AGATCT 2 cut(s) 239, 537
BisI GCNGC 3 cut(s) 492, 866, 966
BlsI GCNGC 3 cut(s) 493, 867, 967
Bme1390I CCNGG 2 cut(s) 478, 738
Bme18I GGWCC 2 cut(s) 47, 521
BmgT120I GGNCC 2 cut(s) 47, 521
BmiI GGNNCC 4 cut(s) 48, 309, 408, 726
BmrFI CCNGG 2 cut(s) 478, 738
BmsI GCATC 3 cut(s) 731, 762, 968
BsaAI YACGTR 1 cut(s) 151
BsaJI CCNNGG 4 cut(s) 402, 500, 699, 990
BsaXI ACNNNNNCTCC 4 cut(s) 144, 174, 391, 421
Bsc4I CCNNNNNNNGG 4 cut(s) 43, 122, 416, 477
Bse1I ACTGG 3 cut(s) 60, 607, 728
Bse21I CCTNAGG 1 cut(s) 1025
Bse3DI GCAATG 1 cut(s) 810
BseBI CCWGG 2 cut(s) 478, 738
BseDI CCNNGG 4 cut(s) 402, 500, 699, 990
BseGI GGATG 4 cut(s) 439, 666, 709, 746
BseLI CCNNNNNNNGG 4 cut(s) 43, 122, 416, 477
BseMI GCAATG 1 cut(s) 810
BseMII CTCAG 2 cut(s) 330, 876
BseNI ACTGG 3 cut(s) 60, 607, 728
BseRI GAGGAG 4 cut(s) 80, 149, 167, 435
BseXI GCAGC 3 cut(s) 478, 852, 952
BsgI GTGCAG 1 cut(s) 477
Bsh1285I CGRYCG 1 cut(s) 15
BshFI GGCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 15
BsiSI CCGG 1 cut(s) 273
BslI CCNNNNNNNGG 4 cut(s) 43, 122, 416, 477
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 9 cut(s) 239, 290, 508, 537, 784, 807, 829, 888, 994
Bsp19I CCATGG 1 cut(s) 990
BspACI CCGC 3 cut(s) 142, 1004, 1030
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 331, 877
BspLI GGNNCC 4 cut(s) 48, 309, 408, 726
BspPI GGATC 4 cut(s) 285, 824, 883, 1002
BspTI CTTAAG 1 cut(s) 184
BsrBI CCGCTC 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 810
BsrI ACTGG 3 cut(s) 60, 607, 728
BssECI CCNNGG 4 cut(s) 402, 500, 699, 990
BssMI GATC 9 cut(s) 239, 290, 508, 537, 784, 807, 829, 888, 994
BssNAI GTATAC 1 cut(s) 626
BssT1I CCWWGG 3 cut(s) 500, 699, 990
Bst1107I GTATAC 1 cut(s) 626
Bst2UI CCWGG 2 cut(s) 478, 738
Bst4CI ACNGT 8 cut(s) 16, 28, 334, 376, 548, 623, 630, 842
BstAFI CTTAAG 1 cut(s) 184
BstAPI GCANNNNNTGC 1 cut(s) 965
BstBAI YACGTR 1 cut(s) 151
BstDEI CTNAG 4 cut(s) 339, 369, 885, 1025
BstDSI CCRYGG 1 cut(s) 990
BstF5I GGATG 4 cut(s) 439, 666, 709, 746
BstH2I RGCGCY 1 cut(s) 192
BstHHI GCGC 3 cut(s) 6, 191, 288
BstKTI GATC 9 cut(s) 242, 293, 511, 540, 787, 810, 832, 891, 997
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 9 cut(s) 239, 290, 508, 537, 784, 807, 829, 888, 994
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 3 cut(s) 305, 821, 965
BstNI CCWGG 2 cut(s) 478, 738
BstSCI CCNGG 2 cut(s) 476, 736
BstSFI CTRYAG 1 cut(s) 486
BstV1I GCAGC 3 cut(s) 478, 852, 952
BstX2I RGATCY 4 cut(s) 239, 537, 888, 994
BstYI RGATCY 4 cut(s) 239, 537, 888, 994
BstZ17I GTATAC 1 cut(s) 626
Bsu36I CCTNAGG 1 cut(s) 1025
BsuI GTATCC 1 cut(s) 453
BsuRI GGCC 1 cut(s) 59
BtgI CCRYGG 1 cut(s) 990
BtsCI GGATG 4 cut(s) 439, 666, 709, 746
BtsIMutI CAGTG 1 cut(s) 67
CaiI CAGNNNCTG 2 cut(s) 338, 380
CfoI GCGC 3 cut(s) 6, 191, 288
Cfr13I GGNCC 2 cut(s) 47, 521
Csp6I GTAC 3 cut(s) 152, 631, 675
CspCI CAANNNNNGTGG 2 cut(s) 861, 896
CviAII CATG 4 cut(s) 472, 506, 778, 991
CviQI GTAC 3 cut(s) 152, 631, 675
DdeI CTNAG 4 cut(s) 339, 369, 885, 1025
DpnI GATC 9 cut(s) 241, 292, 510, 539, 786, 809, 831, 890, 996
DpnII GATC 9 cut(s) 239, 290, 508, 537, 784, 807, 829, 888, 994
DraI TTTAAA 1 cut(s) 120
DraIII CACNNNGTG 1 cut(s) 683
DrdI GACNNNNNNGTC 1 cut(s) 481
DseDI GACNNNNNNGTC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 3 cut(s) 500, 699, 990
Eco47I GGWCC 2 cut(s) 47, 521
Eco57I CTGAAG 1 cut(s) 402
Eco81I CCTNAGG 1 cut(s) 1025
EcoO109I RGGNCCY 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 476, 736
EcoT14I CCWWGG 3 cut(s) 500, 699, 990
ErhI CCWWGG 3 cut(s) 500, 699, 990
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 4 cut(s) 475, 509, 781, 994
FatI CATG 4 cut(s) 471, 505, 777, 990
FauI CCCGC 1 cut(s) 135
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 2 cut(s) 625, 645
Fnu4HI GCNGC 3 cut(s) 492, 866, 966
FokI GGATG 4 cut(s) 426, 653, 716, 753
Fsp4HI GCNGC 3 cut(s) 492, 866, 966
GlaI GCGC 3 cut(s) 5, 190, 287
GluI GCNGC 3 cut(s) 492, 866, 966
HaeII RGCGCY 1 cut(s) 192
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 273
HhaI GCGC 3 cut(s) 6, 191, 288
Hin1II CATG 4 cut(s) 475, 509, 781, 994
Hin6I GCGC 3 cut(s) 4, 189, 286
HinP1I GCGC 3 cut(s) 4, 189, 286
HincII GTYRAC 3 cut(s) 72, 619, 943
HindII GTYRAC 3 cut(s) 72, 619, 943
HinfI GANTC 1 cut(s) 343
HpaII CCGG 1 cut(s) 273
HphI GGTGA 2 cut(s) 589, 803
Hpy166II GTNNAC 6 cut(s) 72, 619, 626, 646, 677, 943
Hpy188I TCNGA 2 cut(s) 38, 563
Hpy188III TCNNGA 3 cut(s) 512, 709, 833
Hpy8I GTNNAC 6 cut(s) 72, 619, 626, 646, 677, 943
Hpy99I CGWCG 1 cut(s) 897
HpyAV CCTTC 1 cut(s) 925
HpyCH4III ACNGT 8 cut(s) 16, 28, 334, 376, 548, 623, 630, 842
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 299, 494, 721, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 821, 965
HpyF3I CTNAG 4 cut(s) 339, 369, 885, 1025
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 475, 509, 781, 994
HspAI GCGC 3 cut(s) 4, 189, 286
Ksp22I TGATCA 1 cut(s) 784
Kzo9I GATC 9 cut(s) 239, 290, 508, 537, 784, 807, 829, 888, 994
LmnI GCTCC 5 cut(s) 162, 313, 412, 724, 862
Lsp1109I GCAGC 3 cut(s) 478, 852, 952
LweI GCATC 3 cut(s) 731, 762, 968
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 4 cut(s) 334, 355, 397, 842
MalI GATC 9 cut(s) 241, 292, 510, 539, 786, 809, 831, 890, 996
MbiI CCGCTC 1 cut(s) 142
MboI GATC 9 cut(s) 239, 290, 508, 537, 784, 807, 829, 888, 994
MboII GAAGA 9 cut(s) 143, 244, 247, 250, 253, 256, 459, 725, 740
MflI RGATCY 4 cut(s) 239, 537, 888, 994
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 4 cut(s) 84, 90, 102, 363
MluNI TGGCCA 1 cut(s) 59
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 5 cut(s) 101, 119, 185, 450, 543
MslI CAYNNNNRTG 2 cut(s) 657, 849
Msp20I TGGCCA 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 184
MspI CCGG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 478, 738
MvaI CCWGG 2 cut(s) 478, 738
MwoI GCNNNNNNNGC 3 cut(s) 305, 821, 965
NcoI CCATGG 1 cut(s) 990
NdeII GATC 9 cut(s) 239, 290, 508, 537, 784, 807, 829, 888, 994
NlaIII CATG 4 cut(s) 475, 509, 781, 994
NlaIV GGNNCC 4 cut(s) 48, 309, 408, 726
NmuCI GTSAC 1 cut(s) 842
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 1 cut(s) 343
PfoI TCCNGGA 1 cut(s) 736
PkrI GCNGC 3 cut(s) 493, 867, 967
Ppu21I YACGTR 1 cut(s) 151
PpuMI RGGWCCY 1 cut(s) 521
Psp5II RGGWCCY 1 cut(s) 521
Psp6I CCWGG 2 cut(s) 476, 736
PspGI CCWGG 2 cut(s) 476, 736
PspN4I GGNNCC 4 cut(s) 48, 309, 408, 726
PspPI GGNCC 2 cut(s) 47, 521
PspPPI RGGWCCY 1 cut(s) 521
PstNI CAGNNNCTG 2 cut(s) 338, 380
PsuI RGATCY 4 cut(s) 239, 537, 888, 994
RsaI GTAC 3 cut(s) 153, 632, 676
RsaNI GTAC 3 cut(s) 152, 631, 675
RseI CAYNNNNRTG 2 cut(s) 657, 849
SaqAI TTAA 5 cut(s) 101, 119, 185, 450, 543
SatI GCNGC 3 cut(s) 492, 866, 966
Sau3AI GATC 9 cut(s) 239, 290, 508, 537, 784, 807, 829, 888, 994
Sau96I GGNCC 2 cut(s) 47, 521
ScrFI CCNGG 2 cut(s) 478, 738
SfaNI GCATC 3 cut(s) 731, 762, 968
SfcI CTRYAG 1 cut(s) 486
SinI GGWCC 2 cut(s) 47, 521
SmiMI CAYNNNNRTG 2 cut(s) 657, 849
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 4 cut(s) 84, 90, 102, 363
SsiI CCGC 3 cut(s) 142, 1004, 1030
StyD4I CCNGG 2 cut(s) 476, 736
StyI CCWWGG 3 cut(s) 500, 699, 990
TaaI ACNGT 8 cut(s) 16, 28, 334, 376, 548, 623, 630, 842
TaiI ACGT 1 cut(s) 153
TasI AATT 4 cut(s) 84, 90, 102, 363
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 1 cut(s) 343
Tru1I TTAA 5 cut(s) 101, 119, 185, 450, 543
Tru9I TTAA 5 cut(s) 101, 119, 185, 450, 543
TscAI CASTG 1 cut(s) 67
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 3 cut(s) 491, 865, 965
Tsp45I GTSAC 1 cut(s) 842
TspDTI ATGAA 2 cut(s) 600, 655
TspGWI ACGGA 1 cut(s) 881
TspRI CASTG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 184
VpaK11BI GGWCC 2 cut(s) 47, 521
XapI RAATTY 2 cut(s) 90, 363
XmiI GTMKAC 2 cut(s) 625, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.