Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0007013

Physical Location & Seq

Genomic Coordinates Forward (+)

13787020 .. 13789229

Gene Structure 2210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10970.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGACCAGGAGGTCTATCGCTGCCCACCCATGGCATGACCTTGAAATCGGACCTGGAGCTCCTAAGATTTTCAACTGTGTTATCGAAATTCCAAAAGGAAGCAAAGTGAAATATGAGCTTGACAAAAAAACTGGACTCATCAAGGTTGACCGCATACTGTACTCATCTGTTGTCTATCCCCATAACTATGGTTTCATCCCCCGTACTCTTTGTGAGGACAATGACCCCTTGGATGTCTTGATTATTATGCAGGAGCCAGTTGTTCCTGGATGCTTTCTTCGTGCCAAAGCTATTGGCCTGATGCCTATGATTGACCAGGGTGAGAAAGATGACAAGATCATTGCTGTTTGTGCTGATGATCCTGAGTACCGACACTACAATGACATCAAGGAGCTCCCACCTCACCGTTTGGCTGAAATCCGGCGCTTCTTTGAGGACTACAAGAAAAATGAGAACAAAGAAGTTGCAGTTGACGACTTTCTCCCTGCATCTACTGCCTTTGACGCAATCCAGCATTCCATGAACCTTTATGCAGACTACATTGTGGAGAGCCTCAGGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

188

Amino Acids

21.49

Weight (kDa)

5.69

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53620
fragaria_vesca	FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350
malus_domestica	MD04G1120600.v1.1 MD12G1137900.v1.1
prunus_persica	Prupe.6G249900_v2.0.a1
pyrus_communis	pycom04g10970 pycom12g13180
rosa_chinensis	RchiOBHm_Chr3g0467401
rosa_laevigata	RLG00000024507
rosa_multiflora	Rmu_sc0001601.1_g000012 Rmu_sc0012351.1_g000009
rosa_roxburghii	Rroxscaffold_6G00413700
rosa_rugosa	Rorug03G0086500 Rorug03G0086600 Rorug03G0086700
rosa_samantha	Rh3AG135300 Rh3BG156800 Rh3CG156600 Rh3DG157600
rosa_wichuraiana	Rw3G012830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
AciI	CCGC	2 cut(s)	151, 559
AclWI	GGATC	1 cut(s)	353
AcsI	RAATTY	1 cut(s)	87
AfaI	GTAC	3 cut(s)	161, 205, 368
AfiI	CCNNNNNNNGG	1 cut(s)	30
AgsI	TTSAA	2 cut(s)	44, 73
AjnI	CCWGG	4 cut(s)	5, 52, 265, 315
AluBI	AGCT	4 cut(s)	59, 118, 290, 394
AluI	AGCT	4 cut(s)	59, 118, 290, 394
Alw21I	GWGCWC	2 cut(s)	61, 396
AlwI	GGATC	1 cut(s)	353
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	20
ApoI	RAATTY	1 cut(s)	87
AspLEI	GCGC	1 cut(s)	426
AspS9I	GGNCC	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	332, 395
AvaII	GGWCC	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	554
BanII	GRGCYC	2 cut(s)	61, 396
Bbv12I	GWGCWC	2 cut(s)	61, 396
BbvI	GCAGC	1 cut(s)	7
BciT130I	CCWGG	4 cut(s)	7, 54, 267, 317
BfoI	RGCGCY	1 cut(s)	427
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	4 cut(s)	7, 54, 267, 317
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	255
BmrFI	CCNGG	4 cut(s)	7, 54, 267, 317
BmsI	GCATC	3 cut(s)	260, 291, 497
BpmI	CTGGAG	1 cut(s)	75
BsaJI	CCNNGG	3 cut(s)	29, 228, 316
Bsc4I	CCNNNNNNNGG	1 cut(s)	30
Bse1I	ACTGG	2 cut(s)	136, 257
Bse21I	CCTNAGG	1 cut(s)	554
Bse3DI	GCAATG	1 cut(s)	339
BseBI	CCWGG	4 cut(s)	7, 54, 267, 317
BseDI	CCNNGG	3 cut(s)	29, 228, 316
BseGI	GGATG	3 cut(s)	195, 238, 275
BseLI	CCNNNNNNNGG	1 cut(s)	30
BseMI	GCAATG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	136, 257
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	297
BsiHKAI	GWGCWC	2 cut(s)	61, 396
BsiSI	CCGG	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	30
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	61, 396
Bsp143I	GATC	2 cut(s)	336, 358
Bsp19I	CCATGG	1 cut(s)	29
BspACI	CCGC	2 cut(s)	151, 559
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	355
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	339
BsrI	ACTGG	2 cut(s)	136, 257
BssECI	CCNNGG	3 cut(s)	29, 228, 316
BssMI	GATC	2 cut(s)	336, 358
BssT1I	CCWWGG	2 cut(s)	29, 228
Bst2UI	CCWGG	4 cut(s)	7, 54, 267, 317
Bst4CI	ACNGT	3 cut(s)	77, 159, 407
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstDEI	CTNAG	3 cut(s)	63, 363, 554
BstDSI	CCRYGG	1 cut(s)	29
BstF5I	GGATG	3 cut(s)	195, 238, 275
BstH2I	RGCGCY	1 cut(s)	427
BstHHI	GCGC	1 cut(s)	426
BstKTI	GATC	2 cut(s)	339, 361
BstMBI	GATC	2 cut(s)	336, 358
BstMWI	GCNNNNNNNGC	3 cut(s)	350, 494, 503
BstNI	CCWGG	4 cut(s)	7, 54, 267, 317
BstSCI	CCNGG	4 cut(s)	5, 52, 265, 315
BstV1I	GCAGC	1 cut(s)	7
BstXI	CCANNNNNNTGG	1 cut(s)	188
Bsu36I	CCTNAGG	1 cut(s)	554
BsuRI	GGCC	1 cut(s)	297
BtgI	CCRYGG	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	195, 238, 275
CfoI	GCGC	1 cut(s)	426
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	1 cut(s)	512
Csp6I	GTAC	3 cut(s)	160, 204, 367
CviAII	CATG	3 cut(s)	30, 35, 520
CviJI	RGCY	8 cut(s)	59, 118, 256, 290, 297, 394, 413, 552
CviKI_1	RGCY	8 cut(s)	59, 118, 256, 290, 297, 394, 413, 552
CviQI	GTAC	3 cut(s)	160, 204, 367
DdeI	CTNAG	3 cut(s)	63, 363, 554
DpnI	GATC	2 cut(s)	338, 360
DpnII	GATC	2 cut(s)	336, 358
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Ecl136II	GAGCTC	2 cut(s)	59, 394
Eco130I	CCWWGG	2 cut(s)	29, 228
Eco24I	GRGCYC	2 cut(s)	61, 396
Eco47I	GGWCC	1 cut(s)	50
Eco53kI	GAGCTC	2 cut(s)	59, 394
Eco81I	CCTNAGG	1 cut(s)	554
EcoICRI	GAGCTC	2 cut(s)	59, 394
EcoRII	CCWGG	4 cut(s)	5, 52, 265, 315
EcoT14I	CCWWGG	2 cut(s)	29, 228
EcoT38I	GRGCYC	2 cut(s)	61, 396
ErhI	CCWWGG	2 cut(s)	29, 228
FaeI	CATG	3 cut(s)	33, 38, 523
FatI	CATG	3 cut(s)	29, 34, 519
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	3 cut(s)	182, 245, 282
FriOI	GRGCYC	2 cut(s)	61, 396
Fsp4HI	GCNGC	1 cut(s)	21
GlaI	GCGC	1 cut(s)	425
GluI	GCNGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	75
HaeII	RGCGCY	1 cut(s)	427
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	1 cut(s)	421
HgaI	GACGC	1 cut(s)	512
HhaI	GCGC	1 cut(s)	426
Hin1II	CATG	3 cut(s)	33, 38, 523
Hin6I	GCGC	1 cut(s)	424
HinP1I	GCGC	1 cut(s)	424
HincII	GTYRAC	2 cut(s)	148, 472
HindII	GTYRAC	2 cut(s)	148, 472
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	2 cut(s)	332, 395
Hpy166II	GTNNAC	2 cut(s)	148, 472
Hpy188I	TCNGA	1 cut(s)	50
Hpy188III	TCNNGA	2 cut(s)	238, 362
Hpy8I	GTNNAC	2 cut(s)	148, 472
HpyCH4III	ACNGT	3 cut(s)	77, 159, 407
HpyCH4V	TGCA	4 cut(s)	250, 467, 488, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	350, 494, 503
HpyF3I	CTNAG	3 cut(s)	63, 363, 554
Hsp92II	CATG	3 cut(s)	33, 38, 523
HspAI	GCGC	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	336, 358
LmnI	GCTCC	5 cut(s)	56, 64, 253, 391, 399
Lsp1109I	GCAGC	1 cut(s)	7
LweI	GCATC	3 cut(s)	260, 291, 497
MalI	GATC	2 cut(s)	338, 360
MboI	GATC	2 cut(s)	336, 358
MboII	GAAGA	1 cut(s)	269
MhlI	GDGCHC	2 cut(s)	61, 396
MluCI	AATT	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	129
MnlI	CCTC	5 cut(s)	3, 208, 411, 427, 563
MslI	CAYNNNNRTG	2 cut(s)	186, 378
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	4 cut(s)	7, 54, 267, 317
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	4 cut(s)	7, 54, 267, 317
MwoI	GCNNNNNNNGC	3 cut(s)	350, 494, 503
NcoI	CCATGG	1 cut(s)	29
NdeII	GATC	2 cut(s)	336, 358
NlaIII	CATG	3 cut(s)	33, 38, 523
NlaIV	GGNNCC	1 cut(s)	255
PctI	GAATGC	1 cut(s)	514
PfoI	TCCNGGA	1 cut(s)	265
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp124BI	GAGCTC	2 cut(s)	61, 396
Psp6I	CCWGG	4 cut(s)	5, 52, 265, 315
PspGI	CCWGG	4 cut(s)	5, 52, 265, 315
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	50
RsaI	GTAC	3 cut(s)	161, 205, 368
RsaNI	GTAC	3 cut(s)	160, 204, 367
RseI	CAYNNNNRTG	2 cut(s)	186, 378
SacI	GAGCTC	2 cut(s)	61, 396
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	336, 358
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	4 cut(s)	7, 54, 267, 317
SduI	GDGCHC	2 cut(s)	61, 396
SfaNI	GCATC	3 cut(s)	260, 291, 497
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	2 cut(s)	186, 378
Sse9I	AATT	1 cut(s)	87
SsiI	CCGC	2 cut(s)	151, 559
SstI	GAGCTC	2 cut(s)	61, 396
StyD4I	CCNGG	4 cut(s)	5, 52, 265, 315
StyI	CCWWGG	2 cut(s)	29, 228
TaaI	ACNGT	3 cut(s)	77, 159, 407
TaqI	TCGA	1 cut(s)	84
TasI	AATT	1 cut(s)	87
TatI	WGTACW	1 cut(s)	159
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	184, 536
VpaK11BI	GGWCC	1 cut(s)	50
XapI	RAATTY	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.