Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001601.1

Orthogroup ID

OG0007013

Physical Location & Seq

Genomic Coordinates Forward (+)

55962 .. 60276

Gene Structure 4315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001601.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atggtccacgttgcttctacgacactcctcccccaccaatcaccaccctcctcccagccccaccgacctagtcaccgtcgaattcacgatatcgcggcgagcgagaaaaagagatgcgctacacggccgttaggaacaccgtctttgtctgaaggtggggtccagtggttgccaatctgtgctgttcttcttcttcttcttcgtctccggcgaggctttgctgtttgctccgatccttttgcagtaatggctccacccattgaggctactcaaacagttactgagattccccaaaaagttgctgaagttcctaagaaagttactgagactccccacaagggtagcaaccattattcctcacatcctcctcttaatgagaggatactttcttccatgaccaggaggtctatagctgcacacccttggcatgatcttgaaataggacctgatactccaaagatctttaactgtgttatagaaattggaaaaggaagcaaggtgaaatatgaacttgacaaaaaaactggacttatcaaggttgaccgtatactgtactcatctgttgtctaccctcacaactatggcttcatcccccgtacgctttgtgaggacaatgaccccttggatgtcttgattattatgcaggagccagttcttcctggatgctttcttcgggctaaagctattggcctgatgcccatgattgatcagggtgagaaagatgacaagatcattgctgtttgtgctgatgatcctgaataccgtcactacaatgacatcaaggagctgccaccacatcgtttggctgagatccgtcgcttctttgaggactacaagaaaaatgagaacaaggaggttttagttgatgactttctccctgcatctgctgcctttgaaagtatccagcagtccatggatctttatgcggactacattgtggagagcctcaggcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

318

Amino Acids

35.9

Weight (kDa)

6.89

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007013)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53620
fragaria_vesca	FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350 FvH4_6g14350
malus_domestica	MD04G1120600.v1.1 MD12G1137900.v1.1
prunus_persica	Prupe.6G249900_v2.0.a1
pyrus_communis	pycom04g10970 pycom12g13180
rosa_chinensis	RchiOBHm_Chr3g0467401
rosa_laevigata	RLG00000024507
rosa_multiflora	Rmu_sc0001601.1_g000012 Rmu_sc0012351.1_g000009
rosa_roxburghii	Rroxscaffold_6G00413700
rosa_rugosa	Rorug03G0086500 Rorug03G0086600 Rorug03G0086700
rosa_samantha	Rh3AG135300 Rh3BG156800 Rh3CG156600 Rh3DG157600
rosa_wichuraiana	Rw3G012830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	403
AccI	GTMKAC	2 cut(s)	547, 567
AccII	CGCG	1 cut(s)	95
AciI	CCGC	3 cut(s)	95, 926, 952
AclWI	GGATC	4 cut(s)	227, 746, 805, 924
AcoI	YGGCCR	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	2 cut(s)	171, 324
AfaI	GTAC	2 cut(s)	554, 598
AfiI	CCNNNNNNNGG	2 cut(s)	338, 399
AgsI	TTSAA	2 cut(s)	437, 896
AjnI	CCWGG	2 cut(s)	398, 658
AluBI	AGCT	3 cut(s)	413, 683, 787
AluI	AGCT	3 cut(s)	413, 683, 787
Alw26I	GTCTC	2 cut(s)	209, 320
AlwI	GGATC	4 cut(s)	227, 746, 805, 924
AlwNI	CAGNNNCTG	1 cut(s)	281
AoxI	GGCC	2 cut(s)	125, 688
ApeKI	GCWGC	3 cut(s)	413, 787, 887
ApoI	RAATTY	1 cut(s)	81
AspLEI	GCGC	1 cut(s)	119
AspS9I	GGNCC	3 cut(s)	4, 160, 443
AsuHPI	GGTGA	4 cut(s)	33, 65, 511, 725
AvaII	GGWCC	3 cut(s)	4, 160, 443
AxyI	CCTNAGG	1 cut(s)	947
BbvI	GCAGC	3 cut(s)	400, 774, 874
BceAI	ACGGC	2 cut(s)	112, 140
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	2 cut(s)	400, 660
BciVI	GTATCC	2 cut(s)	375, 911
BclI	TGATCA	1 cut(s)	706
BcoDI	GTCTC	2 cut(s)	209, 320
BfaI	CTAG	1 cut(s)	69
BfmI	CTRYAG	1 cut(s)	408
BfuI	GTATCC	2 cut(s)	375, 911
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	4 cut(s)	96, 414, 788, 888
BlsI	GCNGC	4 cut(s)	97, 415, 789, 889
Bme1390I	CCNGG	2 cut(s)	400, 660
Bme18I	GGWCC	3 cut(s)	4, 160, 443
BmgT120I	GGNCC	3 cut(s)	4, 160, 443
BmiI	GGNNCC	3 cut(s)	161, 252, 648
BmrFI	CCNGG	2 cut(s)	400, 660
BmsI	GCATC	4 cut(s)	104, 653, 684, 890
BsaJI	CCNNGG	3 cut(s)	422, 621, 912
BsaXI	ACNNNNNCTCC	2 cut(s)	313, 343
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 399
Bse1I	ACTGG	3 cut(s)	163, 529, 650
Bse21I	CCTNAGG	1 cut(s)	947
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	2 cut(s)	400, 660
BseDI	CCNNGG	3 cut(s)	422, 621, 912
BseGI	GGATG	4 cut(s)	361, 588, 631, 668
BseLI	CCNNNNNNNGG	2 cut(s)	338, 399
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	3 cut(s)	273, 315, 798
BseNI	ACTGG	3 cut(s)	163, 529, 650
BseRI	GAGGAG	3 cut(s)	17, 40, 357
BseX3I	CGGCCG	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	400, 774, 874
BseYI	CCCAGC	1 cut(s)	54
BsgI	GTGCAG	1 cut(s)	399
Bsh1236I	CGCG	1 cut(s)	95
Bsh1285I	CGRYCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	127, 690
BsiEI	CGRYCG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	208
BsiWI	CGTACG	1 cut(s)	596
BslI	CCNNNNNNNGG	2 cut(s)	338, 399
BsmAI	GTCTC	2 cut(s)	209, 320
BsmBI	CGTCTC	1 cut(s)	209
BsnI	GGCC	2 cut(s)	127, 690
Bsp143I	GATC	8 cut(s)	232, 430, 459, 706, 729, 751, 810, 916
Bsp19I	CCATGG	1 cut(s)	912
BspACI	CCGC	3 cut(s)	95, 926, 952
BspANI	GGCC	2 cut(s)	127, 690
BspCNI	CTCAG	3 cut(s)	274, 316, 799
BspFNI	CGCG	1 cut(s)	95
BspLI	GGNNCC	3 cut(s)	161, 252, 648
BspPI	GGATC	4 cut(s)	227, 746, 805, 924
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	3 cut(s)	163, 529, 650
BssECI	CCNNGG	3 cut(s)	422, 621, 912
BssMI	GATC	8 cut(s)	232, 430, 459, 706, 729, 751, 810, 916
BssNAI	GTATAC	1 cut(s)	548
BssT1I	CCWWGG	3 cut(s)	422, 621, 912
Bst1107I	GTATAC	1 cut(s)	548
Bst2UI	CCWGG	2 cut(s)	400, 660
Bst4CI	ACNGT	7 cut(s)	77, 141, 277, 470, 545, 552, 764
BstAPI	GCANNNNNTGC	1 cut(s)	887
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	5 cut(s)	282, 312, 324, 807, 947
BstDSI	CCRYGG	1 cut(s)	912
BstF5I	GGATG	4 cut(s)	361, 588, 631, 668
BstFNI	CGCG	1 cut(s)	95
BstHHI	GCGC	1 cut(s)	119
BstKTI	GATC	8 cut(s)	235, 433, 462, 709, 732, 754, 813, 919
BstMAI	GTCTC	2 cut(s)	209, 320
BstMBI	GATC	8 cut(s)	232, 430, 459, 706, 729, 751, 810, 916
BstMCI	CGRYCG	1 cut(s)	128
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 743, 887
BstNI	CCWGG	2 cut(s)	400, 660
BstSCI	CCNGG	2 cut(s)	398, 658
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	95
BstV1I	GCAGC	3 cut(s)	400, 774, 874
BstX2I	RGATCY	3 cut(s)	459, 810, 916
BstYI	RGATCY	3 cut(s)	459, 810, 916
BstZ17I	GTATAC	1 cut(s)	548
BstZI	CGGCCG	1 cut(s)	125
Bsu36I	CCTNAGG	1 cut(s)	947
BsuI	GTATCC	2 cut(s)	375, 911
BsuRI	GGCC	2 cut(s)	127, 690
BtgI	CCRYGG	1 cut(s)	912
BtsCI	GGATG	4 cut(s)	361, 588, 631, 668
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	100
CaiI	CAGNNNCTG	1 cut(s)	281
CfoI	GCGC	1 cut(s)	119
Cfr13I	GGNCC	3 cut(s)	4, 160, 443
Csp6I	GTAC	2 cut(s)	553, 597
CspCI	CAANNNNNGTGG	2 cut(s)	783, 818
CviAII	CATG	4 cut(s)	394, 428, 700, 913
CviQI	GTAC	2 cut(s)	553, 597
DdeI	CTNAG	5 cut(s)	282, 312, 324, 807, 947
DpnI	GATC	8 cut(s)	234, 432, 461, 708, 731, 753, 812, 918
DpnII	GATC	8 cut(s)	232, 430, 459, 706, 729, 751, 810, 916
DrdI	GACNNNNNNGTC	1 cut(s)	403
DseDI	GACNNNNNNGTC	1 cut(s)	403
EaeI	YGGCCR	1 cut(s)	125
EagI	CGGCCG	1 cut(s)	125
EclXI	CGGCCG	1 cut(s)	125
Eco130I	CCWWGG	3 cut(s)	422, 621, 912
Eco32I	GATATC	1 cut(s)	91
Eco47I	GGWCC	3 cut(s)	4, 160, 443
Eco52I	CGGCCG	1 cut(s)	125
Eco57I	CTGAAG	2 cut(s)	171, 324
Eco81I	CCTNAGG	1 cut(s)	947
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	398, 658
EcoRV	GATATC	1 cut(s)	91
EcoT14I	CCWWGG	3 cut(s)	422, 621, 912
ErhI	CCWWGG	3 cut(s)	422, 621, 912
Esp3I	CGTCTC	1 cut(s)	209
FaeI	CATG	4 cut(s)	397, 431, 703, 916
FatI	CATG	4 cut(s)	393, 427, 699, 912
FbaI	TGATCA	1 cut(s)	706
FblI	GTMKAC	2 cut(s)	547, 567
Fnu4HI	GCNGC	4 cut(s)	96, 414, 788, 888
FokI	GGATG	4 cut(s)	348, 575, 638, 675
Fsp4HI	GCNGC	4 cut(s)	96, 414, 788, 888
FspBI	CTAG	1 cut(s)	69
GlaI	GCGC	1 cut(s)	118
GluI	GCNGC	4 cut(s)	96, 414, 788, 888
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	127, 690
HapII	CCGG	1 cut(s)	208
HhaI	GCGC	1 cut(s)	119
Hin1II	CATG	4 cut(s)	397, 431, 703, 916
Hin6I	GCGC	1 cut(s)	117
HinP1I	GCGC	1 cut(s)	117
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HinfI	GANTC	2 cut(s)	286, 328
HpaII	CCGG	1 cut(s)	208
HphI	GGTGA	4 cut(s)	33, 65, 511, 725
Hpy166II	GTNNAC	4 cut(s)	7, 541, 548, 568
Hpy188I	TCNGA	2 cut(s)	151, 232
Hpy188III	TCNNGA	4 cut(s)	86, 434, 631, 755
Hpy8I	GTNNAC	4 cut(s)	7, 541, 548, 568
Hpy99I	CGWCG	2 cut(s)	81, 819
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	7 cut(s)	77, 141, 277, 470, 545, 552, 764
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	4 cut(s)	242, 416, 643, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 743, 887
HpyF3I	CTNAG	5 cut(s)	282, 312, 324, 807, 947
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	4 cut(s)	397, 431, 703, 916
HspAI	GCGC	1 cut(s)	117
Ksp22I	TGATCA	1 cut(s)	706
Kzo9I	GATC	8 cut(s)	232, 430, 459, 706, 729, 751, 810, 916
LmnI	GCTCC	4 cut(s)	233, 256, 646, 784
Lsp1109I	GCAGC	3 cut(s)	400, 774, 874
LweI	GCATC	4 cut(s)	104, 653, 684, 890
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	4 cut(s)	71, 277, 319, 764
MalI	GATC	8 cut(s)	234, 432, 461, 708, 731, 753, 812, 918
MboI	GATC	8 cut(s)	232, 430, 459, 706, 729, 751, 810, 916
MboII	GAAGA	8 cut(s)	179, 182, 185, 188, 191, 381, 647, 662
MflI	RGATCY	3 cut(s)	459, 810, 916
MluCI	AATT	2 cut(s)	81, 480
MlyI	GAGTC	1 cut(s)	322
MseI	TTAA	2 cut(s)	372, 465
MslI	CAYNNNNRTG	2 cut(s)	579, 771
MspI	CCGG	1 cut(s)	208
MspR9I	CCNGG	2 cut(s)	400, 660
MvaI	CCWGG	2 cut(s)	400, 660
MvnI	CGCG	1 cut(s)	95
MwoI	GCNNNNNNNGC	3 cut(s)	248, 743, 887
NcoI	CCATGG	1 cut(s)	912
NdeII	GATC	8 cut(s)	232, 430, 459, 706, 729, 751, 810, 916
NlaIII	CATG	4 cut(s)	397, 431, 703, 916
NlaIV	GGNNCC	3 cut(s)	161, 252, 648
NmuCI	GTSAC	2 cut(s)	71, 764
PcsI	WCGNNNNNNNCGW	2 cut(s)	99, 208
PfeI	GAWTC	1 cut(s)	286
Pfl23II	CGTACG	1 cut(s)	596
PflFI	GACNNNGTC	1 cut(s)	69
PfoI	TCCNGGA	1 cut(s)	658
PkrI	GCNGC	4 cut(s)	97, 415, 789, 889
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PpuMI	RGGWCCY	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	2 cut(s)	398, 658
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	2 cut(s)	398, 658
PspLI	CGTACG	1 cut(s)	596
PspN4I	GGNNCC	3 cut(s)	161, 252, 648
PspPI	GGNCC	3 cut(s)	4, 160, 443
PspPPI	RGGWCCY	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	281
PsuI	RGATCY	3 cut(s)	459, 810, 916
PsyI	GACNNNGTC	1 cut(s)	69
RsaI	GTAC	2 cut(s)	554, 598
RsaNI	GTAC	2 cut(s)	553, 597
RseI	CAYNNNNRTG	2 cut(s)	579, 771
SaqAI	TTAA	2 cut(s)	372, 465
SatI	GCNGC	4 cut(s)	96, 414, 788, 888
Sau3AI	GATC	8 cut(s)	232, 430, 459, 706, 729, 751, 810, 916
Sau96I	GGNCC	3 cut(s)	4, 160, 443
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	400, 660
SfaNI	GCATC	4 cut(s)	104, 653, 684, 890
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	3 cut(s)	4, 160, 443
SmiMI	CAYNNNNRTG	2 cut(s)	579, 771
Sse9I	AATT	2 cut(s)	81, 480
SsiI	CCGC	3 cut(s)	95, 926, 952
SspMI	CTAG	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	398, 658
StyI	CCWWGG	3 cut(s)	422, 621, 912
TaaI	ACNGT	7 cut(s)	77, 141, 277, 470, 545, 552, 764
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	1 cut(s)	79
TasI	AATT	2 cut(s)	81, 480
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	1 cut(s)	98
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	372, 465
Tru9I	TTAA	2 cut(s)	372, 465
TscAI	CASTG	1 cut(s)	170
TseFI	GTSAC	2 cut(s)	71, 764
TseI	GCWGC	3 cut(s)	413, 787, 887
Tsp45I	GTSAC	2 cut(s)	71, 764
TspDTI	ATGAA	2 cut(s)	522, 577
TspGWI	ACGGA	1 cut(s)	803
TspRI	CASTG	1 cut(s)	170
Tth111I	GACNNNGTC	1 cut(s)	69
VpaK11BI	GGWCC	3 cut(s)	4, 160, 443
XapI	RAATTY	1 cut(s)	81
XmiI	GTMKAC	2 cut(s)	547, 567
XspI	CTAG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.