Rh3BG156800

Soluble inorganic

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0007013
Physical Location & Seq
Reverse (-)
13347603 .. 13351694
4092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG156800.1

Sequence Viewer

Length: 732 bp
ATGGCTCCACCCATTGAGTCTACTCAAACAGTTACTGAGATTCCCCAAAAAGTTGCTGAAATTCCTAAGAAAGTTGCTGAAGTTCCTAAGAAAGTTACCGAGACTCCCCACAAGGGTAGCAACCATTATTCCTCACATCCTCCTCTTAATGAGAGGATACTTTCTTCCATGACCAGGAGGTCTATAGCTGCACACCCTTGGCATGATCTTGAAATAGGACCTGATACTCCAAAGATCTTTAACTGTGTTATAGAAATTGGAAAAGGAAGCAAGGTGAAATATGAACTTGACAAAAAAACTGGACTTATCAAGGTTGACCGTATACTGTACTCATCTGTTGTCTACCCTCACAACTATGGCTTCATCCCCCGTACGCTTTGTGAGGACAATGACCCCTTGGATGTCTTGATTATTATGCAGGAGCCAGTTCTTCCTGGATGCTTTCTTCGGGCTAAAGCTATTGGCCTGATGCCCATGATTGATCAGGGTGAGAAAGATGACAAGATCATTGCTGTTTGTGCTGATGATCCTGAATACCGTCACTACAATGACATCAAGGAGCTGCCACCACATCGTTTGGCTGAGATCCGTCGCTTCTTTGAGGACTACAAGAAAAATGAGAACAAGGAGGTTTTAGTTGATGACTTCCTCCCTGCATCTGCTGCCTTTGAAAGTATCCAGCAGTCCATGGATCTTTATGCGGACTACATTGTGGAGAGCCTCAGGCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0010035 GO:0010038 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00190 map00190
Pfam Domains
Protein Families
Pyrophosphatase

Protein Analysis

243

Amino Acids

27.73

Weight (kDa)

5.79

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pyrophosphatase PF00719 82 - 233 3.2e-58 Inorganic pyrophosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 178
AccI GTMKAC 3 cut(s) 20, 322, 342
AciI CCGC 2 cut(s) 701, 727
AclWI GGATC 3 cut(s) 521, 580, 699
AcsI RAATTY 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 99
AfaI GTAC 2 cut(s) 329, 373
AfiI CCNNNNNNNGG 2 cut(s) 113, 174
AgsI TTSAA 2 cut(s) 212, 671
AjnI CCWGG 2 cut(s) 173, 433
AluBI AGCT 3 cut(s) 188, 458, 562
AluI AGCT 3 cut(s) 188, 458, 562
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 3 cut(s) 521, 580, 699
AlwNI CAGNNNCTG 1 cut(s) 35
AoxI GGCC 1 cut(s) 463
ApeKI GCWGC 3 cut(s) 188, 562, 662
ApoI RAATTY 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 286, 500
AvaII GGWCC 1 cut(s) 218
AxyI CCTNAGG 1 cut(s) 722
BbvI GCAGC 3 cut(s) 175, 549, 649
BciT130I CCWGG 2 cut(s) 175, 435
BciVI GTATCC 2 cut(s) 150, 686
BclI TGATCA 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 95
BfmI CTRYAG 1 cut(s) 183
BfuI GTATCC 2 cut(s) 150, 686
BglII AGATCT 1 cut(s) 234
BisI GCNGC 3 cut(s) 189, 563, 663
BlsI GCNGC 3 cut(s) 190, 564, 664
Bme1390I CCNGG 2 cut(s) 175, 435
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 6, 423
BmrFI CCNGG 2 cut(s) 175, 435
BmsI GCATC 3 cut(s) 428, 459, 665
BsaJI CCNNGG 3 cut(s) 197, 396, 687
BsaXI ACNNNNNCTCC 2 cut(s) 88, 118
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 174
Bse1I ACTGG 2 cut(s) 304, 425
Bse21I CCTNAGG 1 cut(s) 722
Bse3DI GCAATG 1 cut(s) 507
BseBI CCWGG 2 cut(s) 175, 435
BseDI CCNNGG 3 cut(s) 197, 396, 687
BseGI GGATG 4 cut(s) 136, 363, 406, 443
BseLI CCNNNNNNNGG 2 cut(s) 113, 174
BseMI GCAATG 1 cut(s) 507
BseMII CTCAG 2 cut(s) 27, 573
BseNI ACTGG 2 cut(s) 304, 425
BseRI GAGGAG 1 cut(s) 132
BseXI GCAGC 3 cut(s) 175, 549, 649
BsgI GTGCAG 1 cut(s) 174
BshFI GGCC 1 cut(s) 465
BsiWI CGTACG 1 cut(s) 371
BslI CCNNNNNNNGG 2 cut(s) 113, 174
BsmAI GTCTC 1 cut(s) 95
BsnI GGCC 1 cut(s) 465
Bsp143I GATC 7 cut(s) 205, 234, 481, 504, 526, 585, 691
Bsp19I CCATGG 1 cut(s) 687
BspACI CCGC 2 cut(s) 701, 727
BspANI GGCC 1 cut(s) 465
BspCNI CTCAG 2 cut(s) 28, 574
BspLI GGNNCC 2 cut(s) 6, 423
BspPI GGATC 3 cut(s) 521, 580, 699
BsrDI GCAATG 1 cut(s) 507
BsrI ACTGG 2 cut(s) 304, 425
BssECI CCNNGG 3 cut(s) 197, 396, 687
BssMI GATC 7 cut(s) 205, 234, 481, 504, 526, 585, 691
BssNAI GTATAC 1 cut(s) 323
BssT1I CCWWGG 3 cut(s) 197, 396, 687
Bst1107I GTATAC 1 cut(s) 323
Bst2UI CCWGG 2 cut(s) 175, 435
Bst4CI ACNGT 5 cut(s) 31, 245, 320, 327, 539
BstAPI GCANNNNNTGC 1 cut(s) 662
BstDEI CTNAG 5 cut(s) 36, 66, 87, 582, 722
BstDSI CCRYGG 1 cut(s) 687
BstF5I GGATG 4 cut(s) 136, 363, 406, 443
BstKTI GATC 7 cut(s) 208, 237, 484, 507, 529, 588, 694
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 7 cut(s) 205, 234, 481, 504, 526, 585, 691
BstMWI GCNNNNNNNGC 2 cut(s) 518, 662
BstNI CCWGG 2 cut(s) 175, 435
BstSCI CCNGG 2 cut(s) 173, 433
BstSFI CTRYAG 1 cut(s) 183
BstV1I GCAGC 3 cut(s) 175, 549, 649
BstX2I RGATCY 3 cut(s) 234, 585, 691
BstYI RGATCY 3 cut(s) 234, 585, 691
BstZ17I GTATAC 1 cut(s) 323
Bsu36I CCTNAGG 1 cut(s) 722
BsuI GTATCC 2 cut(s) 150, 686
BsuRI GGCC 1 cut(s) 465
BtgI CCRYGG 1 cut(s) 687
BtsCI GGATG 4 cut(s) 136, 363, 406, 443
CaiI CAGNNNCTG 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 2 cut(s) 328, 372
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 4 cut(s) 169, 203, 475, 688
CviQI GTAC 2 cut(s) 328, 372
DdeI CTNAG 5 cut(s) 36, 66, 87, 582, 722
DpnI GATC 7 cut(s) 207, 236, 483, 506, 528, 587, 693
DpnII GATC 7 cut(s) 205, 234, 481, 504, 526, 585, 691
DrdI GACNNNNNNGTC 1 cut(s) 178
DseDI GACNNNNNNGTC 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 197, 396, 687
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 99
Eco81I CCTNAGG 1 cut(s) 722
EcoO109I RGGNCCY 1 cut(s) 218
EcoRII CCWGG 2 cut(s) 173, 433
EcoT14I CCWWGG 3 cut(s) 197, 396, 687
ErhI CCWWGG 3 cut(s) 197, 396, 687
FaeI CATG 4 cut(s) 172, 206, 478, 691
FatI CATG 4 cut(s) 168, 202, 474, 687
FbaI TGATCA 1 cut(s) 481
FblI GTMKAC 3 cut(s) 20, 322, 342
Fnu4HI GCNGC 3 cut(s) 189, 563, 663
FokI GGATG 4 cut(s) 123, 350, 413, 450
Fsp4HI GCNGC 3 cut(s) 189, 563, 663
GluI GCNGC 3 cut(s) 189, 563, 663
HaeIII GGCC 1 cut(s) 465
Hin1II CATG 4 cut(s) 172, 206, 478, 691
HincII GTYRAC 1 cut(s) 316
HindII GTYRAC 1 cut(s) 316
HinfI GANTC 3 cut(s) 17, 40, 103
HphI GGTGA 2 cut(s) 286, 500
Hpy166II GTNNAC 4 cut(s) 21, 316, 323, 343
Hpy188III TCNNGA 3 cut(s) 209, 406, 530
Hpy8I GTNNAC 4 cut(s) 21, 316, 323, 343
Hpy99I CGWCG 1 cut(s) 594
HpyCH4III ACNGT 5 cut(s) 31, 245, 320, 327, 539
HpyCH4V TGCA 3 cut(s) 191, 418, 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 662
HpyF3I CTNAG 5 cut(s) 36, 66, 87, 582, 722
Hsp92II CATG 4 cut(s) 172, 206, 478, 691
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 7 cut(s) 205, 234, 481, 504, 526, 585, 691
LmnI GCTCC 3 cut(s) 10, 421, 559
Lsp1109I GCAGC 3 cut(s) 175, 549, 649
LweI GCATC 3 cut(s) 428, 459, 665
MaeIII GTNAC 3 cut(s) 31, 94, 539
MalI GATC 7 cut(s) 207, 236, 483, 506, 528, 587, 693
MboI GATC 7 cut(s) 205, 234, 481, 504, 526, 585, 691
MboII GAAGA 3 cut(s) 156, 422, 437
MflI RGATCY 3 cut(s) 234, 585, 691
MluCI AATT 2 cut(s) 60, 255
MlyI GAGTC 2 cut(s) 26, 97
MseI TTAA 2 cut(s) 147, 240
MslI CAYNNNNRTG 2 cut(s) 354, 546
MspR9I CCNGG 2 cut(s) 175, 435
MvaI CCWGG 2 cut(s) 175, 435
MwoI GCNNNNNNNGC 2 cut(s) 518, 662
NcoI CCATGG 1 cut(s) 687
NdeII GATC 7 cut(s) 205, 234, 481, 504, 526, 585, 691
NlaIII CATG 4 cut(s) 172, 206, 478, 691
NlaIV GGNNCC 2 cut(s) 6, 423
NmuCI GTSAC 1 cut(s) 539
PfeI GAWTC 1 cut(s) 40
Pfl23II CGTACG 1 cut(s) 371
PfoI TCCNGGA 1 cut(s) 433
PkrI GCNGC 3 cut(s) 190, 564, 664
PleI GAGTC 2 cut(s) 25, 97
PpsI GAGTC 2 cut(s) 25, 97
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
Psp6I CCWGG 2 cut(s) 173, 433
PspGI CCWGG 2 cut(s) 173, 433
PspLI CGTACG 1 cut(s) 371
PspN4I GGNNCC 2 cut(s) 6, 423
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
PstNI CAGNNNCTG 1 cut(s) 35
PsuI RGATCY 3 cut(s) 234, 585, 691
RsaI GTAC 2 cut(s) 329, 373
RsaNI GTAC 2 cut(s) 328, 372
RseI CAYNNNNRTG 2 cut(s) 354, 546
SaqAI TTAA 2 cut(s) 147, 240
SatI GCNGC 3 cut(s) 189, 563, 663
Sau3AI GATC 7 cut(s) 205, 234, 481, 504, 526, 585, 691
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 26, 97
ScrFI CCNGG 2 cut(s) 175, 435
SetI ASST 8 cut(s) 182, 190, 223, 276, 315, 460, 564, 633
SfaNI GCATC 3 cut(s) 428, 459, 665
SfcI CTRYAG 1 cut(s) 183
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 2 cut(s) 354, 546
Sse9I AATT 2 cut(s) 60, 255
SsiI CCGC 2 cut(s) 701, 727
StyD4I CCNGG 2 cut(s) 173, 433
StyI CCWWGG 3 cut(s) 197, 396, 687
TaaI ACNGT 5 cut(s) 31, 245, 320, 327, 539
TasI AATT 2 cut(s) 60, 255
TatI WGTACW 1 cut(s) 327
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 2 cut(s) 147, 240
Tru9I TTAA 2 cut(s) 147, 240
TseFI GTSAC 1 cut(s) 539
TseI GCWGC 3 cut(s) 188, 562, 662
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 2 cut(s) 297, 352
TspGWI ACGGA 1 cut(s) 578
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 1 cut(s) 60
XmiI GTMKAC 3 cut(s) 20, 322, 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.