Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010828

Physical Location & Seq

Genomic Coordinates Forward (+)

30655514 .. 30659546

Gene Structure 4033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G365200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCTCTGAGTTTCAATTCCATGATGACTTTCCCATCTCACAACCTCCTTTCTAAGTCCCACAATCTCAGTTCACCAAAAATCTTCATGGCCTCTACTCTTCACTCTTCCGCTAAAGAGATGGAAAATTTGAAGAAGTCTTTTTTGCCTCCACGTGAGGTACATGTTCAAGTGAAACATTCACTGCCTCCTCAACAGATTGAGATCTTCAAATCATTAGAAGATTGGGCTGATAAGAACATCTTGGTACACCTAAAGCCAGTTGAGAAATGCTGGCAACCACAAGATTTTCTTCCAATGCCTGAATCAGATGGATTCTATGATCAAGTTAAGGAGTTGAGGGAAAGAGCAAAGGAAATTCCTGATGATTATTTTGTTGTGTTGGTTGGAGATATGATCACTGAAGAAGCCCTACCAACTTATCAGACAATGCTTAATACCTTGGATGGAGTTCGGGATGAGACTGGTGCAAGCCTTACTTCCTGGGCAATATGGACCAGGGCCTGGACTGCCGAAGAGAACAGGCATGGTGACCTTCTAAACAAGTATCTTTATCTCTCGGGACGAGTAGATATGAAACAAATTGAAAAGACAATTCAATATCTTATTGGATCAGGAATGGATCCTAAAACAGAAAACAATCCCTACCTTGGGTTCATATATACTTCATTTCAAGAGAGGGCAACATTCATCTGCCATGGGAACACAGCCAGGCAAGCCAAAGAGCACGGGGACCCGAAATTGGCTCAGATATGTGGTACCATTGCCTCAGATGAAAAACGCCATGAAACTGCCTATACAAAGATTGTGGAAAAGCTCTTTGAGATTGATCCAGATGGCACTGTCTTGGCTTTAGCTGACATGATGAAGAAAAAAATATCAATGCCAGCCCCCTTGATGTACGATGGTCAAGATGATAATCTTTTTGAACATTTCTCAGCTGTTGCCCAGCGGCTTGAAGTGTATACTGCTAGGGATTATGCTGATATTTTGGAGTTTTTGGTTGGAAGATGGAACATAGAGAAGTTGACGGGTCTTTCGGGTGAGGGACGTAAAGCTCAGGATTTTGTGTGTAGATTGCCGCCCAGAATTAGAAAGTTGGAGGAGAGGGCTCAGGGAAAGGCCAAGCAATCATCCACTGTTCCAATCAGCTGGCTTTTTGGTAGAGAAGTAAAGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00061 ko01040 ko01212 map00061 map01040 map01212

Pfam Domains

Protein Families

FA_desaturase_2

Protein Analysis

394

Amino Acids

44.95

Weight (kDa)

6.04

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02630 AT5G16230 AT5G16240
fragaria_vesca	FvH4_6g00080
malus_domestica	MD00G1017300.v1.1 MD12G1261600.v1.1
prunus_persica	Prupe.6G365100_v2.0.a1 Prupe.6G365100_v2.0.a1 Prupe.6G365200_v2.0.a1
pyrus_communis	pycom04g21990
rosa_chinensis	RchiOBHm_Chr3g0447411
rosa_laevigata	RLG00000026001
rosa_multiflora	Rmu_ssc0000473.1_g000020
rosa_roxburghii	Rroxscaffold_6G00425610
rosa_rugosa	Rorug02G0601300
rosa_samantha	Rh3AG001400 Rh3BG001100 Rh3CG001000 Rh3DG001300
rosa_wichuraiana	Rw3G000080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	758
AccB1I	GGYRCC	1 cut(s)	758
AccB7I	CCANNNNNTGG	1 cut(s)	504
AccI	GTMKAC	1 cut(s)	965
AciI	CCGC	3 cut(s)	111, 952, 1082
AclWI	GGATC	4 cut(s)	617, 619, 630, 824
AcsI	RAATTY	2 cut(s)	127, 357
AcuI	CTGAAG	1 cut(s)	423
AcvI	CACGTG	1 cut(s)	155
AfaI	GTAC	4 cut(s)	162, 249, 760, 902
AfiI	CCNNNNNNNGG	4 cut(s)	504, 650, 651, 742
AflIII	ACRYGT	1 cut(s)	163
AgsI	TTSAA	9 cut(s)	16, 133, 170, 211, 587, 599, 674, 929, 959
AjnI	CCWGG	4 cut(s)	482, 497, 503, 710
AluBI	AGCT	5 cut(s)	817, 857, 941, 1058, 1152
AluI	AGCT	5 cut(s)	817, 857, 941, 1058, 1152
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	1 cut(s)	455
AlwI	GGATC	4 cut(s)	617, 619, 630, 824
AlwNI	CAGNNNCTG	1 cut(s)	504
Ama87I	CYCGRG	1 cut(s)	559
AoxI	GGCC	3 cut(s)	90, 501, 1122
ApoI	RAATTY	2 cut(s)	127, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	1021, 1053
Asp718I	GGTACC	1 cut(s)	758
AspS9I	GGNCC	3 cut(s)	495, 501, 733
AsuHPI	GGTGA	3 cut(s)	66, 542, 1055
AvaI	CYCGRG	1 cut(s)	559
AvaII	GGWCC	2 cut(s)	495, 733
BamHI	GGATCC	1 cut(s)	622
BanI	GGYRCC	1 cut(s)	758
BanII	GRGCYC	1 cut(s)	1114
BarI	GAAGNNNNNNTAC	2 cut(s)	396, 428
BbrPI	CACGTG	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	729
BccI	CCATC	7 cut(s)	43, 115, 305, 440, 830, 899, 1005
BciT130I	CCWGG	4 cut(s)	484, 499, 505, 712
BclI	TGATCA	2 cut(s)	322, 396
BcoDI	GTCTC	1 cut(s)	455
BfaI	CTAG	1 cut(s)	972
BglII	AGATCT	1 cut(s)	204
BisI	GCNGC	2 cut(s)	953, 1082
BlsI	GCNGC	2 cut(s)	954, 1083
Bme1390I	CCNGG	4 cut(s)	484, 499, 505, 712
Bme18I	GGWCC	2 cut(s)	495, 733
BmeT110I	CYCGRG	1 cut(s)	559
BmgT120I	GGNCC	3 cut(s)	495, 501, 733
BmiI	GGNNCC	4 cut(s)	624, 734, 735, 760
BmrFI	CCNGG	4 cut(s)	484, 499, 505, 712
Bpu10I	CCTNAGC	2 cut(s)	1059, 1113
BsaAI	YACGTR	1 cut(s)	155
BsaBI	GATNNNNATC	2 cut(s)	203, 918
BsaJI	CCNNGG	5 cut(s)	441, 483, 498, 649, 697
Bsc4I	CCNNNNNNNGG	4 cut(s)	504, 650, 651, 742
Bse1I	ACTGG	2 cut(s)	260, 469
Bse3DI	GCAATG	1 cut(s)	762
Bse8I	GATNNNNATC	2 cut(s)	203, 918
BseBI	CCWGG	4 cut(s)	484, 499, 505, 712
BseDI	CCNNGG	5 cut(s)	441, 483, 498, 649, 697
BseGI	GGATG	3 cut(s)	451, 463, 1133
BseJI	GATNNNNATC	2 cut(s)	203, 918
BseLI	CCNNNNNNNGG	4 cut(s)	504, 650, 651, 742
BseMI	GCAATG	1 cut(s)	762
BseMII	CTCAG	6 cut(s)	82, 761, 783, 951, 1073, 1127
BseNI	ACTGG	2 cut(s)	260, 469
BseRI	GAGGAG	2 cut(s)	180, 1118
BseYI	CCCAGC	1 cut(s)	948
BshFI	GGCC	3 cut(s)	92, 503, 1124
BshNI	GGYRCC	1 cut(s)	758
BsiHKAI	GWGCWC	1 cut(s)	729
BsiHKCI	CYCGRG	1 cut(s)	559
BslFI	GGGAC	4 cut(s)	43, 576, 746, 1062
BslI	CCNNNNNNNGG	4 cut(s)	504, 650, 651, 742
BsmAI	GTCTC	1 cut(s)	455
BsmFI	GGGAC	4 cut(s)	43, 576, 746, 1062
BsnI	GGCC	3 cut(s)	92, 503, 1124
BsoBI	CYCGRG	1 cut(s)	559
Bsp1286I	GDGCHC	2 cut(s)	729, 1114
Bsp143I	GATC	6 cut(s)	204, 322, 396, 611, 622, 829
Bsp19I	CCATGG	1 cut(s)	697
BspACI	CCGC	3 cut(s)	111, 952, 1082
BspANI	GGCC	3 cut(s)	92, 503, 1124
BspCNI	CTCAG	6 cut(s)	81, 760, 782, 950, 1072, 1126
BspLI	GGNNCC	4 cut(s)	624, 734, 735, 760
BspPI	GGATC	4 cut(s)	617, 619, 630, 824
BspT107I	GGYRCC	1 cut(s)	758
BsrDI	GCAATG	1 cut(s)	762
BsrI	ACTGG	2 cut(s)	260, 469
BssECI	CCNNGG	5 cut(s)	441, 483, 498, 649, 697
BssMI	GATC	6 cut(s)	204, 322, 396, 611, 622, 829
BssNAI	GTATAC	1 cut(s)	966
BssT1I	CCWWGG	3 cut(s)	441, 649, 697
Bst1107I	GTATAC	1 cut(s)	966
Bst2UI	CCWGG	4 cut(s)	484, 499, 505, 712
Bst4CI	ACNGT	2 cut(s)	844, 1141
Bst6I	CTCTTC	3 cut(s)	105, 112, 510
BstBAI	YACGTR	1 cut(s)	155
BstC8I	GCNNGC	5 cut(s)	275, 472, 717, 888, 1154
BstDEI	CTNAG	8 cut(s)	8, 54, 68, 747, 769, 937, 1059, 1113
BstDSI	CCRYGG	1 cut(s)	697
BstEII	GGTNACC	1 cut(s)	530
BstF5I	GGATG	3 cut(s)	451, 463, 1133
BstKTI	GATC	6 cut(s)	207, 325, 399, 614, 625, 832
BstMAI	GTCTC	1 cut(s)	455
BstMBI	GATC	6 cut(s)	204, 322, 396, 611, 622, 829
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 716
BstNI	CCWGG	4 cut(s)	484, 499, 505, 712
BstNSI	RCATGY	1 cut(s)	167
BstPI	GGTNACC	1 cut(s)	530
BstSCI	CCNGG	4 cut(s)	482, 497, 503, 710
BstX2I	RGATCY	2 cut(s)	204, 622
BstXI	CCANNNNNNTGG	1 cut(s)	1152
BstYI	RGATCY	2 cut(s)	204, 622
BstZ17I	GTATAC	1 cut(s)	966
BsuRI	GGCC	3 cut(s)	92, 503, 1124
BtgI	CCRYGG	1 cut(s)	697
BtsCI	GGATG	3 cut(s)	451, 463, 1133
BtsI	GCAGTG	1 cut(s)	182
BtsIMutI	CAGTG	4 cut(s)	182, 399, 840, 1137
Cac8I	GCNNGC	5 cut(s)	275, 472, 717, 888, 1154
CaiI	CAGNNNCTG	1 cut(s)	504
Cfr13I	GGNCC	3 cut(s)	495, 501, 733
Csp6I	GTAC	4 cut(s)	161, 248, 759, 901
CspCI	CAANNNNNGTGG	2 cut(s)	789, 824
CviAII	CATG	7 cut(s)	22, 88, 164, 527, 698, 785, 862
CviQI	GTAC	4 cut(s)	161, 248, 759, 901
DdeI	CTNAG	8 cut(s)	8, 54, 68, 747, 769, 937, 1059, 1113
DpnI	GATC	6 cut(s)	206, 324, 398, 613, 624, 831
DpnII	GATC	6 cut(s)	204, 322, 396, 611, 622, 829
Eam1104I	CTCTTC	3 cut(s)	105, 112, 510
EarI	CTCTTC	3 cut(s)	105, 112, 510
Eco130I	CCWWGG	3 cut(s)	441, 649, 697
Eco24I	GRGCYC	1 cut(s)	1114
Eco47I	GGWCC	2 cut(s)	495, 733
Eco57I	CTGAAG	1 cut(s)	423
Eco72I	CACGTG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	559
Eco91I	GGTNACC	1 cut(s)	530
EcoO109I	RGGNCCY	2 cut(s)	501, 733
EcoO65I	GGTNACC	1 cut(s)	530
EcoRII	CCWGG	4 cut(s)	482, 497, 503, 710
EcoT14I	CCWWGG	3 cut(s)	441, 649, 697
EcoT38I	GRGCYC	1 cut(s)	1114
ErhI	CCWWGG	3 cut(s)	441, 649, 697
FaeI	CATG	7 cut(s)	25, 91, 167, 530, 701, 788, 865
FalI	AAGNNNNNCTT	6 cut(s)	227, 259, 276, 308, 463, 495
FaqI	GGGAC	4 cut(s)	43, 576, 746, 1062
FatI	CATG	7 cut(s)	21, 87, 163, 526, 697, 784, 861
FbaI	TGATCA	2 cut(s)	322, 396
FblI	GTMKAC	1 cut(s)	965
Fnu4HI	GCNGC	2 cut(s)	953, 1082
FokI	GGATG	3 cut(s)	458, 470, 1120
FriOI	GRGCYC	1 cut(s)	1114
Fsp4HI	GCNGC	2 cut(s)	953, 1082
FspBI	CTAG	1 cut(s)	972
GluI	GCNGC	2 cut(s)	953, 1082
GsaI	CCCAGC	1 cut(s)	952
HaeIII	GGCC	3 cut(s)	92, 503, 1124
Hin1II	CATG	7 cut(s)	25, 91, 167, 530, 701, 788, 865
HincII	GTYRAC	1 cut(s)	1029
HindII	GTYRAC	1 cut(s)	1029
HinfI	GANTC	2 cut(s)	305, 315
HphI	GGTGA	3 cut(s)	66, 542, 1055
Hpy166II	GTNNAC	4 cut(s)	74, 250, 966, 1029
Hpy188I	TCNGA	5 cut(s)	9, 310, 426, 750, 772
Hpy188III	TCNNGA	8 cut(s)	362, 455, 561, 615, 674, 833, 911, 1061
Hpy8I	GTNNAC	4 cut(s)	74, 250, 966, 1029
HpyAV	CCTTC	1 cut(s)	545
HpyCH4III	ACNGT	2 cut(s)	844, 1141
HpyCH4IV	ACGT	2 cut(s)	154, 1051
HpyCH4V	TGCA	1 cut(s)	470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 716
HpyF3I	CTNAG	8 cut(s)	8, 54, 68, 747, 769, 937, 1059, 1113
HpySE526I	ACGT	2 cut(s)	154, 1051
Hsp92II	CATG	7 cut(s)	25, 91, 167, 530, 701, 788, 865
KflI	GGGWCCC	1 cut(s)	733
KpnI	GGTACC	1 cut(s)	762
Ksp22I	TGATCA	2 cut(s)	322, 396
Kzo9I	GATC	6 cut(s)	204, 322, 396, 611, 622, 829
MaeI	CTAG	1 cut(s)	972
MaeII	ACGT	2 cut(s)	154, 1051
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	6 cut(s)	206, 324, 398, 613, 624, 831
MboI	GATC	6 cut(s)	204, 322, 396, 611, 622, 829
MflI	RGATCY	2 cut(s)	204, 622
MhlI	GDGCHC	2 cut(s)	729, 1114
MluCI	AATT	7 cut(s)	16, 127, 357, 582, 594, 740, 1089
MmeI	TCCRAC	3 cut(s)	367, 985, 1080
MseI	TTAA	3 cut(s)	330, 435, 1180
MspA1I	CMGCKG	3 cut(s)	941, 952, 1152
MspR9I	CCNGG	4 cut(s)	484, 499, 505, 712
MvaI	CCWGG	4 cut(s)	484, 499, 505, 712
MwoI	GCNNNNNNNGC	2 cut(s)	509, 716
NcoI	CCATGG	1 cut(s)	697
NdeII	GATC	6 cut(s)	204, 322, 396, 611, 622, 829
NlaIII	CATG	7 cut(s)	25, 91, 167, 530, 701, 788, 865
NlaIV	GGNNCC	4 cut(s)	624, 734, 735, 760
NmuCI	GTSAC	1 cut(s)	530
NspI	RCATGY	1 cut(s)	167
PciI	ACATGT	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	305, 315
PflMI	CCANNNNNTGG	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	954, 1083
PmaCI	CACGTG	1 cut(s)	155
PmlI	CACGTG	1 cut(s)	155
Ppu21I	YACGTR	1 cut(s)	155
PpuMI	RGGWCCY	1 cut(s)	733
PscI	ACATGT	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	733
Psp6I	CCWGG	4 cut(s)	482, 497, 503, 710
PspCI	CACGTG	1 cut(s)	155
PspEI	GGTNACC	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	948
PspGI	CCWGG	4 cut(s)	482, 497, 503, 710
PspN4I	GGNNCC	4 cut(s)	624, 734, 735, 760
PspPI	GGNCC	3 cut(s)	495, 501, 733
PspPPI	RGGWCCY	1 cut(s)	733
PstNI	CAGNNNCTG	1 cut(s)	504
PsuI	RGATCY	2 cut(s)	204, 622
PvuII	CAGCTG	2 cut(s)	941, 1152
RsaI	GTAC	4 cut(s)	162, 249, 760, 902
RsaNI	GTAC	4 cut(s)	161, 248, 759, 901
SaqAI	TTAA	3 cut(s)	330, 435, 1180
SatI	GCNGC	2 cut(s)	953, 1082
Sau3AI	GATC	6 cut(s)	204, 322, 396, 611, 622, 829
Sau96I	GGNCC	3 cut(s)	495, 501, 733
ScrFI	CCNGG	4 cut(s)	484, 499, 505, 712
SduI	GDGCHC	2 cut(s)	729, 1114
SinI	GGWCC	2 cut(s)	495, 733
Sse9I	AATT	7 cut(s)	16, 127, 357, 582, 594, 740, 1089
SsiI	CCGC	3 cut(s)	111, 952, 1082
SspMI	CTAG	1 cut(s)	972
StyD4I	CCNGG	4 cut(s)	482, 497, 503, 710
StyI	CCWWGG	3 cut(s)	441, 649, 697
TaaI	ACNGT	2 cut(s)	844, 1141
TaiI	ACGT	2 cut(s)	157, 1054
TasI	AATT	7 cut(s)	16, 127, 357, 582, 594, 740, 1089
TauI	GCSGC	2 cut(s)	955, 1084
TfiI	GAWTC	2 cut(s)	305, 315
Tru1I	TTAA	3 cut(s)	330, 435, 1180
Tru9I	TTAA	3 cut(s)	330, 435, 1180
TscAI	CASTG	4 cut(s)	189, 406, 847, 1144
TseFI	GTSAC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	530
TspDTI	ATGAA	8 cut(s)	76, 590, 646, 657, 679, 789, 801, 881
TspRI	CASTG	4 cut(s)	189, 406, 847, 1144
Van91I	CCANNNNNTGG	1 cut(s)	504
VpaK11BI	GGWCC	2 cut(s)	495, 733
XapI	RAATTY	2 cut(s)	127, 357
XceI	RCATGY	1 cut(s)	167
XmiI	GTMKAC	1 cut(s)	965
XspI	CTAG	1 cut(s)	972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.