Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010201

Physical Location & Seq

Genomic Coordinates Reverse (-)

5325889 .. 5330295

Gene Structure 4407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G028700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGCGACCAAGACCGGGTCACTGAATTACTGGAGGAATTACTTTCGGACTGCGAATTCGGATATTTTCGATATAATCGACCATGCGATAATGGTGGCGGCTTCGGATTGCCCAAAGGAGTTCAAATTGCGGAGGGATCGAATAGCAGAGCGGTTGTTTTCGTGTCGATTGACCCGGTGTTCGGGCTGCGACAAAATGGAGTTGGCGGTGCCTGGTGGCGATGGAGAAGATGACGATGATGATGGAGGGTGTAAAAGTGGGTTTGATAGAGATGGAGGTGAAGTTGAGGCTGGTGCTAGTAAAGAGAGCAAGGTCAATAGCAGTAGAGATGATCAGGGAGAGATGAACATGAACCAGCTTAGCAATTACAGCTATGGATTAGCTGAGGCTTTGACTGCTGAGATTGAAGAAGAGTCTGAAATTGTAGGGGAGGTCTTCAGGATTAAAGAGATCTTCAATAATTGTGAAGAAGAGTCTGATACGGTATTGTTTGAGTCTTTGAGGAAGCTTCAGTTGATGGCTCTGAATGTGGAGACTCTCAAGGCAACTGAAATTGGAAAGGCTGTTAACGGTCTCCGAAAGCATGGATCAAAGAAAATTCGTCATCTTGCTCGATCACTTATCGATGGATGGAAAGACATGGTAGATGAATGGGTCAATGCTACAACAGCTCTTGCCGGCACAGAAGCTATGTCGGATTCCGTTGATCCATCTTTTGATGACGAGGAAGGACTACCATCTCCTCCTTTGGATGAAGGAGCTTTCTTTGCTACTCAAACGACATCAATGGAACTCTCACAGTTCTTTGACGGCATGGATGATTTCGGAAATCCTCGAAACAACCGTGACAATGGAAGAAAACCATCAGTGGAGAAACAAAATATTGTAAAGCAGAAACAACAGCCTTCAAATGAGGCAAATGTGCTTCCCAAGGAAAACAAGAATGAACAAGTGAAGAAACAAGAAGTTGTAAAGCCAAATAAGCTCTCGAACACTGACTCTGGGCCTGGCAGACCTCCCAAAGTAAATATGGAGCAAAAGGTCAATAATGAAACGAAGATCCAGCAAAAAACAGATAAGGTTGCCATTCAAAAGAGGCAACTCACTGGTCAGCAAGATAAATTCAAGTGTTCAGATGAAGTTGCAGTCCAAGTGAAACTTGAAGCCACAAAAAGGAAACTCCAAGAGCGTTATCAACAAGCCGAGAATGCCAAGAGGCAACGGACGGTACAGGTTATGGAGTTGCAAGATCTCCCCAAGCAAGGACTTGCCCGTAGGAATCCACATGGGAAGCCTGGAAACCACAATCGACATTGGGCGCATGGACGGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

445

Amino Acids

49.97

Weight (kDa)

5.85

Isoelectric Point (pI)

43.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10820 AT3G10820 AT5G05140
fragaria_vesca	FvH4_6g37520 FvH4_6g37520
malus_domestica	MD14G1088300.v1.1
prunus_persica	Prupe.7G028700_v2.0.a1 Prupe.7G028700_v2.0.a1
pyrus_communis	pycom14g07840
rosa_chinensis	RchiOBHm_Chr2g0150411
rosa_laevigata	RLG00000020496
rosa_multiflora	Rmu_co8445931.1_g000001 Rmu_sc0002179.1_g000015 Rmu_ssc0000480.1_g000013
rosa_roxburghii	Rroxscaffold_2G00097150
rosa_rugosa	Rorug02G0421100
rosa_samantha	Rh2AG480400 Rh2BG492500 Rh2CG466700 Rh2DG501300
rosa_wichuraiana	Rw2G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	208
AccBSI	CCGCTC	1 cut(s)	151
AciI	CCGC	4 cut(s)	98, 130, 151, 206
AclWI	GGATC	4 cut(s)	144, 595, 701, 1054
AcsI	RAATTY	3 cut(s)	55, 597, 1121
AcuI	CTGAAG	2 cut(s)	421, 494
AfaI	GTAC	1 cut(s)	1230
AfiI	CCNNNNNNNGG	4 cut(s)	15, 181, 1173, 1262
AgsI	TTSAA	7 cut(s)	124, 407, 457, 909, 1091, 1126, 1163
AjnI	CCWGG	3 cut(s)	211, 1006, 1294
AluBI	AGCT	8 cut(s)	358, 372, 383, 508, 671, 689, 761, 985
AluI	AGCT	8 cut(s)	358, 372, 383, 508, 671, 689, 761, 985
Alw26I	GTCTC	2 cut(s)	527, 578
AlwI	GGATC	4 cut(s)	144, 595, 701, 1054
AoxI	GGCC	1 cut(s)	1004
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	3 cut(s)	55, 597, 1121
ArsI	GACNNNNNNTTYG	4 cut(s)	40, 72, 163, 195
AspLEI	GCGC	1 cut(s)	1321
AspS9I	GGNCC	1 cut(s)	1004
AsuC2I	CCSGG	2 cut(s)	16, 175
AsuHPI	GGTGA	1 cut(s)	290
BanI	GGYRCC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	427
BbvCI	CCTCAGC	1 cut(s)	384
BbvI	GCAGC	1 cut(s)	173
BccI	CCATC	9 cut(s)	215, 236, 266, 511, 620, 624, 718, 745, 871
BceAI	ACGGC	1 cut(s)	826
BciT130I	CCWGG	3 cut(s)	213, 1008, 1296
BclI	TGATCA	1 cut(s)	331
BcnI	CCSGG	2 cut(s)	16, 175
BcoDI	GTCTC	2 cut(s)	527, 578
BfaI	CTAG	1 cut(s)	297
BglII	AGATCT	2 cut(s)	450, 1249
BisI	GCNGC	2 cut(s)	99, 187
BlpI	GCTNAGC	1 cut(s)	359
BlsI	GCNGC	2 cut(s)	100, 188
Bme1390I	CCNGG	5 cut(s)	16, 175, 213, 1008, 1296
BmgT120I	GGNCC	1 cut(s)	1004
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	5 cut(s)	16, 175, 213, 1008, 1296
BpiI	GAAGAC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	52
Bpu10I	CCTNAGC	1 cut(s)	384
Bpu1102I	GCTNAGC	1 cut(s)	359
BpuEI	CTTGAG	1 cut(s)	524
BpuMI	CCSGG	2 cut(s)	16, 175
Bsa29I	ATCGAT	1 cut(s)	624
BsaI	GGTCTC	1 cut(s)	578
BsaJI	CCNNGG	1 cut(s)	930
BsaXI	ACNNNNNCTCC	2 cut(s)	267, 297
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 181, 1173, 1262
Bse118I	RCCGGY	1 cut(s)	677
Bse1I	ACTGG	2 cut(s)	35, 1111
BseBI	CCWGG	3 cut(s)	213, 1008, 1296
BseCI	ATCGAT	1 cut(s)	624
BseDI	CCNNGG	1 cut(s)	930
BseGI	GGATG	3 cut(s)	635, 757, 823
BseLI	CCNNNNNNNGG	4 cut(s)	15, 181, 1173, 1262
BseMII	CTCAG	2 cut(s)	375, 390
BseNI	ACTGG	2 cut(s)	35, 1111
BseRI	GAGGAG	1 cut(s)	732
BseXI	GCAGC	1 cut(s)	173
BshFI	GGCC	1 cut(s)	1006
BshNI	GGYRCC	1 cut(s)	208
BshVI	ATCGAT	1 cut(s)	624
BsiSI	CCGG	3 cut(s)	15, 175, 678
BslI	CCNNNNNNNGG	4 cut(s)	15, 181, 1173, 1262
BsmAI	GTCTC	2 cut(s)	527, 578
BsmI	GAATGC	1 cut(s)	1213
BsnI	GGCC	1 cut(s)	1006
Bso31I	GGTCTC	1 cut(s)	578
Bsp143I	GATC	8 cut(s)	136, 331, 450, 587, 614, 706, 1059, 1249
Bsp1720I	GCTNAGC	1 cut(s)	359
BspACI	CCGC	4 cut(s)	98, 130, 151, 206
BspANI	GGCC	1 cut(s)	1006
BspCNI	CTCAG	2 cut(s)	376, 391
BspDI	ATCGAT	1 cut(s)	624
BspLI	GGNNCC	1 cut(s)	210
BspPI	GGATC	4 cut(s)	144, 595, 701, 1054
BspT107I	GGYRCC	1 cut(s)	208
BspTNI	GGTCTC	1 cut(s)	578
BsrBI	CCGCTC	1 cut(s)	151
BsrFI	RCCGGY	1 cut(s)	677
BsrI	ACTGG	2 cut(s)	35, 1111
BssAI	RCCGGY	1 cut(s)	677
BssECI	CCNNGG	1 cut(s)	930
BssMI	GATC	8 cut(s)	136, 331, 450, 587, 614, 706, 1059, 1249
BssT1I	CCWWGG	1 cut(s)	930
Bst2UI	CCWGG	3 cut(s)	213, 1008, 1296
Bst4CI	ACNGT	5 cut(s)	484, 572, 801, 845, 1228
Bst6I	CTCTTC	2 cut(s)	405, 465
BstC8I	GCNNGC	1 cut(s)	679
BstDEI	CTNAG	3 cut(s)	359, 384, 399
BstF5I	GGATG	3 cut(s)	635, 757, 823
BstHHI	GCGC	1 cut(s)	1321
BstKTI	GATC	8 cut(s)	139, 334, 453, 590, 617, 709, 1062, 1252
BstMAI	GTCTC	2 cut(s)	527, 578
BstMBI	GATC	8 cut(s)	136, 331, 450, 587, 614, 706, 1059, 1249
BstMWI	GCNNNNNNNGC	6 cut(s)	369, 395, 668, 767, 982, 1208
BstNI	CCWGG	3 cut(s)	213, 1008, 1296
BstSCI	CCNGG	5 cut(s)	14, 173, 211, 1006, 1294
BstV1I	GCAGC	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	3 cut(s)	450, 1059, 1249
BstYI	RGATCY	3 cut(s)	450, 1059, 1249
Bsu15I	ATCGAT	1 cut(s)	624
BsuRI	GGCC	1 cut(s)	1006
BsuTUI	ATCGAT	1 cut(s)	624
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	3 cut(s)	635, 757, 823
BtsIMutI	CAGTG	4 cut(s)	20, 873, 993, 1104
Cac8I	GCNNGC	1 cut(s)	679
CfoI	GCGC	1 cut(s)	1321
Cfr10I	RCCGGY	1 cut(s)	677
Cfr13I	GGNCC	1 cut(s)	1004
ClaI	ATCGAT	1 cut(s)	624
Csp6I	GTAC	1 cut(s)	1229
CviAII	CATG	7 cut(s)	83, 349, 584, 640, 814, 1286, 1322
CviQI	GTAC	1 cut(s)	1229
DdeI	CTNAG	3 cut(s)	359, 384, 399
DpnI	GATC	8 cut(s)	138, 333, 452, 589, 616, 708, 1061, 1251
DpnII	GATC	8 cut(s)	136, 331, 450, 587, 614, 706, 1059, 1249
Eam1104I	CTCTTC	2 cut(s)	405, 465
EarI	CTCTTC	2 cut(s)	405, 465
Eco130I	CCWWGG	1 cut(s)	930
Eco31I	GGTCTC	1 cut(s)	578
Eco57I	CTGAAG	2 cut(s)	421, 494
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	3 cut(s)	211, 1006, 1294
EcoT14I	CCWWGG	1 cut(s)	930
ErhI	CCWWGG	1 cut(s)	930
FaeI	CATG	7 cut(s)	86, 352, 587, 643, 817, 1289, 1325
FalI	AAGNNNNNCTT	2 cut(s)	1143, 1175
FatI	CATG	7 cut(s)	82, 348, 583, 639, 813, 1285, 1321
FbaI	TGATCA	1 cut(s)	331
Fnu4HI	GCNGC	2 cut(s)	99, 187
FokI	GGATG	3 cut(s)	642, 764, 830
Fsp4HI	GCNGC	2 cut(s)	99, 187
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	1320
GluI	GCNGC	2 cut(s)	99, 187
GsuI	CTGGAG	1 cut(s)	52
HaeIII	GGCC	1 cut(s)	1006
HapII	CCGG	3 cut(s)	15, 175, 678
HhaI	GCGC	1 cut(s)	1321
Hin1II	CATG	7 cut(s)	86, 352, 587, 643, 817, 1289, 1325
Hin6I	GCGC	1 cut(s)	1319
HinP1I	GCGC	1 cut(s)	1319
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	506
HinfI	GANTC	7 cut(s)	413, 473, 494, 535, 698, 998, 1279
HpaI	GTTAAC	1 cut(s)	568
HpaII	CCGG	3 cut(s)	15, 175, 678
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188III	TCNNGA	2 cut(s)	439, 988
Hpy8I	GTNNAC	1 cut(s)	568
HpyAV	CCTTC	3 cut(s)	722, 749, 915
HpyCH4III	ACNGT	5 cut(s)	484, 572, 801, 845, 1228
HpyCH4V	TGCA	2 cut(s)	1145, 1246
HpyF10VI	GCNNNNNNNGC	6 cut(s)	369, 395, 668, 767, 982, 1208
HpyF3I	CTNAG	3 cut(s)	359, 384, 399
Hsp92II	CATG	7 cut(s)	86, 352, 587, 643, 817, 1289, 1325
HspAI	GCGC	1 cut(s)	1319
KroI	GCCGGC	1 cut(s)	677
KroNI	GCCGGC	1 cut(s)	679
Ksp22I	TGATCA	1 cut(s)	331
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	8 cut(s)	136, 331, 450, 587, 614, 706, 1059, 1249
LmnI	GCTCC	2 cut(s)	758, 1033
Lsp1109I	GCAGC	1 cut(s)	173
MaeI	CTAG	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	18, 845
MalI	GATC	8 cut(s)	138, 333, 452, 589, 616, 708, 1061, 1251
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	8 cut(s)	136, 331, 450, 587, 614, 706, 1059, 1249
MflI	RGATCY	3 cut(s)	450, 1059, 1249
MlyI	GAGTC	5 cut(s)	422, 482, 503, 529, 992
MmeI	TCCRAC	1 cut(s)	675
MroNI	GCCGGC	1 cut(s)	677
MseI	TTAA	2 cut(s)	444, 567
MspI	CCGG	3 cut(s)	15, 175, 678
MspR9I	CCNGG	5 cut(s)	16, 175, 213, 1008, 1296
Mva1269I	GAATGC	1 cut(s)	1213
MvaI	CCWGG	3 cut(s)	213, 1008, 1296
MwoI	GCNNNNNNNGC	6 cut(s)	369, 395, 668, 767, 982, 1208
NaeI	GCCGGC	1 cut(s)	679
NciI	CCSGG	2 cut(s)	16, 175
NdeII	GATC	8 cut(s)	136, 331, 450, 587, 614, 706, 1059, 1249
NgoMIV	GCCGGC	1 cut(s)	677
NlaIII	CATG	7 cut(s)	86, 352, 587, 643, 817, 1289, 1325
NlaIV	GGNNCC	1 cut(s)	210
NmeAIII	GCCGAG	1 cut(s)	1228
NmuCI	GTSAC	2 cut(s)	18, 845
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 841
PctI	GAATGC	1 cut(s)	1213
PdiI	GCCGGC	1 cut(s)	679
PfeI	GAWTC	2 cut(s)	698, 1279
PflFI	GACNNNGTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	100, 188
PleI	GAGTC	5 cut(s)	421, 481, 502, 529, 992
PpsI	GAGTC	5 cut(s)	421, 481, 502, 529, 992
Psp6I	CCWGG	3 cut(s)	211, 1006, 1294
PspGI	CCWGG	3 cut(s)	211, 1006, 1294
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	1004
PsuI	RGATCY	3 cut(s)	450, 1059, 1249
PsyI	GACNNNGTC	1 cut(s)	16
RsaI	GTAC	1 cut(s)	1230
RsaNI	GTAC	1 cut(s)	1229
SaqAI	TTAA	2 cut(s)	444, 567
SatI	GCNGC	2 cut(s)	99, 187
Sau3AI	GATC	8 cut(s)	136, 331, 450, 587, 614, 706, 1059, 1249
Sau96I	GGNCC	1 cut(s)	1004
SchI	GAGTC	5 cut(s)	422, 482, 503, 529, 992
ScrFI	CCNGG	5 cut(s)	16, 175, 213, 1008, 1296
SmlI	CTYRAG	1 cut(s)	539
SmoI	CTYRAG	1 cut(s)	539
SsiI	CCGC	4 cut(s)	98, 130, 151, 206
SspI	AATATT	1 cut(s)	883
SspMI	CTAG	1 cut(s)	297
StyD4I	CCNGG	5 cut(s)	14, 173, 211, 1006, 1294
StyI	CCWWGG	1 cut(s)	930
TaaI	ACNGT	5 cut(s)	484, 572, 801, 845, 1228
TaqI	TCGA	9 cut(s)	69, 78, 139, 166, 613, 624, 835, 989, 1309
TauI	GCSGC	1 cut(s)	101
TfiI	GAWTC	2 cut(s)	698, 1279
Tru1I	TTAA	2 cut(s)	444, 567
Tru9I	TTAA	2 cut(s)	444, 567
TscAI	CASTG	4 cut(s)	27, 873, 1000, 1111
TseFI	GTSAC	2 cut(s)	18, 845
TseI	GCWGC	1 cut(s)	186
Tsp45I	GTSAC	2 cut(s)	18, 845
TspDTI	ATGAA	7 cut(s)	359, 365, 663, 768, 960, 1065, 1152
TspGWI	ACGGA	2 cut(s)	691, 1237
TspRI	CASTG	4 cut(s)	27, 873, 1000, 1111
Tth111I	GACNNNGTC	1 cut(s)	16
XapI	RAATTY	3 cut(s)	55, 597, 1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1027
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.