Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0010201

Physical Location & Seq

Genomic Coordinates Forward (+)

8137231 .. 8139561

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g07840.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGCGACCAACTCCGGGTCACTGAATTATTGGAGGGATTACTTTCGGACTGCAAACTCTGATATTTTTGATATAATCGACCATGCGATCATGGTGGCGGCTTCCGATTGCCCCACGGAGTTGAGATTGCGGCGGGATCGGATAGCAGAGCGGTTGTTTTCCAGCAGATTGACCCGGTGGTGTTCGGGTTGCGAAAAACAAGTCGAATTGGCCACCGTGCCAGGCGGCGATGGAGAAGGACATGACGACGAAGGCGGCAGCGACGATGTGCACAGAGGGTGTAAAAGTGAGTTTGACGGAGGTGGAGGGGAAGTCGAGGGCGGTGGCAGTAAAGAGAGCAAGGTGAATAGCAGCAGCAGAGATGATGAGGGCGGGCTTAGCAGCGACAGCTATGGATTGGCTGAGGCTTTGACAGATGAGATTGAGCAAGAGTCTCAAACTCTTGGGGAGGTCTTCAGGATTAGAGACATGTTTCTTGATTACGAACAAGAGTCTGATACGGTATTGTTCGACTCTTTGAGGAAGCTTCAGTTGATGGCTCTGAATGTGGAGACTCTCGAGGCAACTGAAATTGGAAAGGCGGTTAGTGGTCTCAAAAAGCATGGATCAAAGCAGATTCGTCATCTTGCTCGAGAGCTTGTCTCAGGTTGGAAAGGCATGGTAGATGAATGGGTCAATGCTACAGCAGCTATTGCCAGCACGAAAACTATGTCAGATTCTGTTAATCCATCTTTTGATGATGAAGAAGGACTACCATCTCCTCCTCTTGATGAAGCTTTCCTTGCTAATCAAACCACCACAATAGAACTCTCTCAGTTCTTTGACGGCATGGATGATGATGGAAATCCTCGAAACAACGGGGAATTCACTGAGTACCGTGAAAATGGAAGAAAGCGAGAAGTGGAGAAAGAAAATACTATTAAGCAGAACCAACAATATTCAAATGAGGCAAATGTGCTTCCCAAGGGAAACAAGAATGAACAAGTGAAGAAACGAGAAGTTGTGAAGCCAAATAAGCCCTCAAACACTCACTATGGGCCTAGCAGACCTCCCAAAGTTAGTATGGATCAAAAGGTCAACAGTGAAACAAAGATCGAGCAAAAAACAGATAAGGTTGCCATTCAAAAGAGGCAACACGCTGGTCAGCAAAATGTAGGTGCTAAAATTCAAGGGTTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

394

Amino Acids

43.65

Weight (kDa)

4.99

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10820 AT3G10820 AT5G05140
fragaria_vesca	FvH4_6g37520 FvH4_6g37520
malus_domestica	MD14G1088300.v1.1
prunus_persica	Prupe.7G028700_v2.0.a1 Prupe.7G028700_v2.0.a1
pyrus_communis	pycom14g07840
rosa_chinensis	RchiOBHm_Chr2g0150411
rosa_laevigata	RLG00000020496
rosa_multiflora	Rmu_co8445931.1_g000001 Rmu_sc0002179.1_g000015 Rmu_ssc0000480.1_g000013
rosa_roxburghii	Rroxscaffold_2G00097150
rosa_rugosa	Rorug02G0421100
rosa_samantha	Rh2AG480400 Rh2BG492500 Rh2CG466700 Rh2DG501300
rosa_wichuraiana	Rw2G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	151
AciI	CCGC	9 cut(s)	98, 130, 133, 151, 225, 255, 321, 372, 581
AclWI	GGATC	3 cut(s)	144, 613, 1074
AcoI	YGGCCR	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	863, 1164
AcuI	CTGAAG	2 cut(s)	439, 512
AfaI	GTAC	1 cut(s)	875
AfiI	CCNNNNNNNGG	1 cut(s)	15
AflIII	ACRYGT	1 cut(s)	468
AgsI	TTSAA	3 cut(s)	942, 1124, 1169
AjnI	CCWGG	1 cut(s)	220
AluBI	AGCT	5 cut(s)	390, 526, 637, 689, 776
AluI	AGCT	5 cut(s)	390, 526, 637, 689, 776
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	5 cut(s)	438, 459, 545, 596, 646
Alw44I	GTGCAC	1 cut(s)	269
AlwI	GGATC	3 cut(s)	144, 613, 1074
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	2 cut(s)	557, 630
AoxI	GGCC	2 cut(s)	210, 1037
ApaLI	GTGCAC	1 cut(s)	269
ApeKI	GCWGC	5 cut(s)	258, 351, 354, 381, 686
ApoI	RAATTY	2 cut(s)	863, 1164
ArsI	GACNNNNNNTTYG	4 cut(s)	186, 218, 695, 727
AspS9I	GGNCC	1 cut(s)	1037
AsuC2I	CCSGG	2 cut(s)	16, 175
AsuHPI	GGTGA	1 cut(s)	355
AvaI	CYCGRG	2 cut(s)	557, 630
BaeGI	GKGCMC	1 cut(s)	273
BalI	TGGCCA	1 cut(s)	212
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
BbsI	GAAGAC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	5 cut(s)	270, 363, 366, 393, 698
BccI	CCATC	5 cut(s)	224, 529, 736, 763, 833
BceAI	ACGGC	1 cut(s)	841
BciT130I	CCWGG	1 cut(s)	222
BcnI	CCSGG	2 cut(s)	16, 175
BcoDI	GTCTC	5 cut(s)	438, 459, 545, 596, 646
BfaI	CTAG	1 cut(s)	1041
BfmI	CTRYAG	1 cut(s)	681
BisI	GCNGC	9 cut(s)	99, 131, 226, 256, 259, 352, 355, 382, 687
BlpI	GCTNAGC	1 cut(s)	377
BlsI	GCNGC	9 cut(s)	100, 132, 227, 257, 260, 353, 356, 383, 688
Bme1390I	CCNGG	3 cut(s)	16, 175, 222
BmeT110I	CYCGRG	2 cut(s)	557, 630
BmgT120I	GGNCC	1 cut(s)	1037
BmrFI	CCNGG	3 cut(s)	16, 175, 222
BpiI	GAAGAC	1 cut(s)	445
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuMI	CCSGG	2 cut(s)	16, 175
BsaBI	GATNNNNATC	1 cut(s)	843
BsaI	GGTCTC	1 cut(s)	596
BsaJI	CCNNGG	2 cut(s)	114, 963
BsaXI	ACNNNNNCTCC	2 cut(s)	297, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse8I	GATNNNNATC	1 cut(s)	843
BseBI	CCWGG	1 cut(s)	222
BseDI	CCNNGG	2 cut(s)	114, 963
BseGI	GGATG	1 cut(s)	838
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseMII	CTCAG	4 cut(s)	393, 657, 827, 861
BseRI	GAGGAG	2 cut(s)	750, 753
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	5 cut(s)	270, 363, 366, 393, 698
BshFI	GGCC	2 cut(s)	212, 1039
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	2 cut(s)	557, 630
BsiSI	CCGG	2 cut(s)	15, 175
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	5 cut(s)	438, 459, 545, 596, 646
BsnI	GGCC	2 cut(s)	212, 1039
Bso31I	GGTCTC	1 cut(s)	596
BsoBI	CYCGRG	2 cut(s)	557, 630
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	5 cut(s)	87, 136, 605, 1066, 1092
Bsp1720I	GCTNAGC	1 cut(s)	377
BspACI	CCGC	9 cut(s)	98, 130, 133, 151, 225, 255, 321, 372, 581
BspANI	GGCC	2 cut(s)	212, 1039
BspCNI	CTCAG	4 cut(s)	394, 656, 826, 862
BspPI	GGATC	3 cut(s)	144, 613, 1074
BspTNI	GGTCTC	1 cut(s)	596
BsrBI	CCGCTC	1 cut(s)	151
BssECI	CCNNGG	2 cut(s)	114, 963
BssMI	GATC	5 cut(s)	87, 136, 605, 1066, 1092
BssT1I	CCWWGG	1 cut(s)	963
Bst2UI	CCWGG	1 cut(s)	222
Bst4CI	ACNGT	4 cut(s)	217, 502, 878, 1082
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	2 cut(s)	374, 697
BstDEI	CTNAG	5 cut(s)	377, 402, 643, 813, 870
BstDSI	CCRYGG	1 cut(s)	114
BstF5I	GGATG	1 cut(s)	838
BstKTI	GATC	5 cut(s)	90, 139, 608, 1069, 1095
BstMAI	GTCTC	5 cut(s)	438, 459, 545, 596, 646
BstMBI	GATC	5 cut(s)	87, 136, 605, 1066, 1092
BstMWI	GCNNNNNNNGC	6 cut(s)	378, 387, 686, 692, 782, 1015
BstNI	CCWGG	1 cut(s)	222
BstNSI	RCATGY	1 cut(s)	472
BstSCI	CCNGG	3 cut(s)	14, 173, 220
BstSFI	CTRYAG	1 cut(s)	681
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	5 cut(s)	270, 363, 366, 393, 698
BstV2I	GAAGAC	1 cut(s)	445
BsuRI	GGCC	2 cut(s)	212, 1039
BtgI	CCRYGG	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	838
BtsIMutI	CAGTG	3 cut(s)	20, 867, 1087
Cac8I	GCNNGC	2 cut(s)	374, 697
CaiI	CAGNNNCTG	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	1037
Csp6I	GTAC	1 cut(s)	874
CviAII	CATG	7 cut(s)	83, 91, 242, 469, 602, 658, 829
CviQI	GTAC	1 cut(s)	874
DdeI	CTNAG	5 cut(s)	377, 402, 643, 813, 870
DpnI	GATC	5 cut(s)	89, 138, 607, 1068, 1094
DpnII	GATC	5 cut(s)	87, 136, 605, 1066, 1092
EaeI	YGGCCR	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	963
Eco31I	GGTCTC	1 cut(s)	596
Eco57I	CTGAAG	2 cut(s)	439, 512
Eco88I	CYCGRG	2 cut(s)	557, 630
EcoRI	GAATTC	1 cut(s)	863
EcoRII	CCWGG	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	963
ErhI	CCWWGG	1 cut(s)	963
FaeI	CATG	7 cut(s)	86, 94, 245, 472, 605, 661, 832
FalI	AAGNNNNNCTT	2 cut(s)	765, 797
FatI	CATG	7 cut(s)	82, 90, 241, 468, 601, 657, 828
FauI	CCCGC	2 cut(s)	126, 365
Fnu4HI	GCNGC	9 cut(s)	99, 131, 226, 256, 259, 352, 355, 382, 687
FokI	GGATG	1 cut(s)	845
Fsp4HI	GCNGC	9 cut(s)	99, 131, 226, 256, 259, 352, 355, 382, 687
FspBI	CTAG	1 cut(s)	1041
GluI	GCNGC	9 cut(s)	99, 131, 226, 256, 259, 352, 355, 382, 687
HaeIII	GGCC	2 cut(s)	212, 1039
HapII	CCGG	2 cut(s)	15, 175
Hin1II	CATG	7 cut(s)	86, 94, 245, 472, 605, 661, 832
HincII	GTYRAC	1 cut(s)	1078
HindII	GTYRAC	1 cut(s)	1078
HindIII	AAGCTT	2 cut(s)	524, 774
HinfI	GANTC	6 cut(s)	431, 491, 512, 553, 616, 716
HpaII	CCGG	2 cut(s)	15, 175
HphI	GGTGA	1 cut(s)	355
Hpy166II	GTNNAC	2 cut(s)	271, 1078
Hpy188I	TCNGA	8 cut(s)	48, 61, 106, 141, 496, 543, 715, 1178
Hpy188III	TCNNGA	5 cut(s)	457, 476, 557, 632, 767
Hpy8I	GTNNAC	2 cut(s)	271, 1078
Hpy99I	CGWCG	2 cut(s)	251, 266
HpyAV	CCTTC	3 cut(s)	230, 245, 740
HpyCH4III	ACNGT	4 cut(s)	217, 502, 878, 1082
HpyCH4V	TGCA	2 cut(s)	53, 271
HpyF10VI	GCNNNNNNNGC	6 cut(s)	378, 387, 686, 692, 782, 1015
HpyF3I	CTNAG	5 cut(s)	377, 402, 643, 813, 870
Hsp92II	CATG	7 cut(s)	86, 94, 245, 472, 605, 661, 832
Kzo9I	GATC	5 cut(s)	87, 136, 605, 1066, 1092
LpnPI	CCDG	9 cut(s)	28, 175, 188, 207, 234, 442, 630, 709, 1125
Lsp1109I	GCAGC	5 cut(s)	270, 363, 366, 393, 698
MaeI	CTAG	1 cut(s)	1041
MaeIII	GTNAC	1 cut(s)	18
MalI	GATC	5 cut(s)	89, 138, 607, 1068, 1094
MbiI	CCGCTC	1 cut(s)	151
MboI	GATC	5 cut(s)	87, 136, 605, 1066, 1092
MboII	GAAGA	4 cut(s)	445, 755, 900, 1000
MhlI	GDGCHC	1 cut(s)	273
MlsI	TGGCCA	1 cut(s)	212
MluCI	AATT	5 cut(s)	25, 206, 570, 863, 1164
MluNI	TGGCCA	1 cut(s)	212
MlyI	GAGTC	4 cut(s)	440, 500, 506, 547
MmeI	TCCRAC	1 cut(s)	629
Mox20I	TGGCCA	1 cut(s)	212
MscI	TGGCCA	1 cut(s)	212
MseI	TTAA	2 cut(s)	723, 921
Msp20I	TGGCCA	1 cut(s)	212
MspI	CCGG	2 cut(s)	15, 175
MspR9I	CCNGG	3 cut(s)	16, 175, 222
MvaI	CCWGG	1 cut(s)	222
MwoI	GCNNNNNNNGC	6 cut(s)	378, 387, 686, 692, 782, 1015
NciI	CCSGG	2 cut(s)	16, 175
NdeII	GATC	5 cut(s)	87, 136, 605, 1066, 1092
NlaIII	CATG	7 cut(s)	86, 94, 245, 472, 605, 661, 832
NmuCI	GTSAC	1 cut(s)	18
NspI	RCATGY	1 cut(s)	472
PaeR7I	CTCGAG	2 cut(s)	557, 630
PciI	ACATGT	1 cut(s)	468
PfeI	GAWTC	2 cut(s)	616, 716
PkrI	GCNGC	9 cut(s)	100, 132, 227, 257, 260, 353, 356, 383, 688
PleI	GAGTC	4 cut(s)	439, 499, 506, 547
PpsI	GAGTC	4 cut(s)	439, 499, 506, 547
PscI	ACATGT	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	220
PspPI	GGNCC	1 cut(s)	1037
PstNI	CAGNNNCTG	1 cut(s)	719
RsaI	GTAC	1 cut(s)	875
RsaNI	GTAC	1 cut(s)	874
SaqAI	TTAA	2 cut(s)	723, 921
SatI	GCNGC	9 cut(s)	99, 131, 226, 256, 259, 352, 355, 382, 687
Sau3AI	GATC	5 cut(s)	87, 136, 605, 1066, 1092
Sau96I	GGNCC	1 cut(s)	1037
SchI	GAGTC	4 cut(s)	440, 500, 506, 547
ScrFI	CCNGG	3 cut(s)	16, 175, 222
SduI	GDGCHC	1 cut(s)	273
SfcI	CTRYAG	1 cut(s)	681
Sfr274I	CTCGAG	2 cut(s)	557, 630
SlaI	CTCGAG	2 cut(s)	557, 630
SmlI	CTYRAG	2 cut(s)	557, 630
SmoI	CTYRAG	2 cut(s)	557, 630
Sse9I	AATT	5 cut(s)	25, 206, 570, 863, 1164
SsiI	CCGC	9 cut(s)	98, 130, 133, 151, 225, 255, 321, 372, 581
SspI	AATATT	1 cut(s)	938
SspMI	CTAG	1 cut(s)	1041
StyD4I	CCNGG	3 cut(s)	14, 173, 220
StyI	CCWWGG	1 cut(s)	963
TaaI	ACNGT	4 cut(s)	217, 502, 878, 1082
TaqI	TCGA	8 cut(s)	78, 204, 315, 510, 558, 631, 850, 1095
TasI	AATT	5 cut(s)	25, 206, 570, 863, 1164
TauI	GCSGC	4 cut(s)	101, 133, 228, 258
TfiI	GAWTC	2 cut(s)	616, 716
Tru1I	TTAA	2 cut(s)	723, 921
Tru9I	TTAA	2 cut(s)	723, 921
TscAI	CASTG	3 cut(s)	27, 874, 1087
TseFI	GTSAC	1 cut(s)	18
TseI	GCWGC	5 cut(s)	258, 351, 354, 381, 686
Tsp45I	GTSAC	1 cut(s)	18
TspDTI	ATGAA	4 cut(s)	681, 756, 786, 993
TspGWI	ACGGA	2 cut(s)	131, 312
TspRI	CASTG	3 cut(s)	27, 874, 1087
VneI	GTGCAC	1 cut(s)	269
XapI	RAATTY	2 cut(s)	863, 1164
XceI	RCATGY	1 cut(s)	472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1060
XhoI	CTCGAG	2 cut(s)	557, 630
XspI	CTAG	1 cut(s)	1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.