Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002179.1

Orthogroup ID

OG0010201

Physical Location & Seq

Genomic Coordinates Forward (+)

77616 .. 79713

Gene Structure 2098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002179.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

atggcgaccacggccaagtctgggtcttcattgaattactggaggaattatttccggacggcgaattccgacattttcggcatcattgaccatgccatcatggttgccgctgtggattgtcccaaggagttcaggttgcggagggatcgagttgctgagctcttgttttcctgcagaatgagcaggtgttcgggttgcgaaaaggtggagttggtggtgcctggtgctcatggtcatggtcatgatgatcactatgaggtggagcatgatgatgatgatgatgatgaccgaggaggtgatagagattttgaggccggggctagtaaagagagcaaggtcaatagcagcagagatgatcagattggtgaaatgagcatgaagaatgatcaggatagcaattacagctatggattggctgaggctttgaccgatgagattgaacaagagtctcaggttttcggggaggttgtgaggatcaaagagatcttccagaatagtgaacatgagtctgatgctgtattgtttgagtcgttgaggaagcttgagttgatggctctgtctgtggagactctcaaggcaactgagattgggaaggctgttaaccggctaagaaagcatggatcaatgaagattcgtaatcttgttcgaacactaattgatgggtggaaagtcatggtagatgaatgggtcaatgctactacagctattgcttctgggggaacagaagttatttcggattctgttgatccatcaattgatgatgactttgaagaaggacttcccactcctccattggatgaaggagctttctttgccactcaaaccacctcaatggaactctctgagttctttgatggtatggaagattatgggaatcctcgaaacagtgggcaacataccaggaatcgtgaaaatggaagaaaaccatcactggagaaacaaaatgttgtgaagcaggaacaacagtatgttagtgatcagggaaatgtgcttcccaagaaaataaaaagtgaaccagtgatggtgaaacaagaagttgatgtgaagccaaataggccctcaaacaccaactctggccctcggagacctcccaaaataagtatggagcgaaagggtgtcagtagtgtaacaaatattgagcaaagaacagataaggtttccattcagaagaggcaactcactggtcagcagcaagataaatacaagtgttcagatgaagttgcagtgcaagtgaagcttgaagccacaaaaaggaaactccaggagagttatcaacaagctgagaatgccaagaagcaacggacagtacagggcacatgggcggagattatgagcaaggaagaagttgatccattgggtcagagttgggattcatacaaaacgacaaaagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

464

Amino Acids

52.29

Weight (kDa)

5.19

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10820 AT3G10820 AT5G05140
fragaria_vesca	FvH4_6g37520 FvH4_6g37520
malus_domestica	MD14G1088300.v1.1
prunus_persica	Prupe.7G028700_v2.0.a1 Prupe.7G028700_v2.0.a1
pyrus_communis	pycom14g07840
rosa_chinensis	RchiOBHm_Chr2g0150411
rosa_laevigata	RLG00000020496
rosa_multiflora	Rmu_co8445931.1_g000001 Rmu_sc0002179.1_g000015 Rmu_ssc0000480.1_g000013
rosa_roxburghii	Rroxscaffold_2G00097150
rosa_rugosa	Rorug02G0421100
rosa_samantha	Rh2AG480400 Rh2BG492500 Rh2CG466700 Rh2DG501300
rosa_wichuraiana	Rw2G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	174
Acc36I	ACCTGC	1 cut(s)	174
AccB1I	GGYRCC	1 cut(s)	217
AccIII	TCCGGA	1 cut(s)	54
AciI	CCGC	3 cut(s)	108, 139, 1322
AclWI	GGATC	5 cut(s)	153, 482, 628, 740, 1343
AcoI	YGGCCR	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	64
AfaI	GTAC	1 cut(s)	1308
AfiI	CCNNNNNNNGG	2 cut(s)	21, 1251
AgsI	TTSAA	4 cut(s)	34, 440, 770, 1241
AjnI	CCWGG	3 cut(s)	220, 899, 1260
AluBI	AGCT	8 cut(s)	160, 405, 541, 704, 806, 1237, 1280, 1391
AluI	AGCT	8 cut(s)	160, 405, 541, 704, 806, 1237, 1280, 1391
Alw21I	GWGCWC	2 cut(s)	162, 229
Alw26I	GTCTC	3 cut(s)	453, 560, 1078
AlwI	GGATC	5 cut(s)	153, 482, 628, 740, 1343
Aor13HI	TCCGGA	1 cut(s)	54
AoxI	GGCC	4 cut(s)	12, 312, 1055, 1075
ApeKI	GCWGC	2 cut(s)	345, 1189
ApoI	RAATTY	1 cut(s)	64
Asp700I	GAANNNNTTC	2 cut(s)	50, 777
AspS9I	GGNCC	2 cut(s)	1056, 1076
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	3 cut(s)	308, 377, 1036
AsuII	TTCGAA	1 cut(s)	646
BaeGI	GKGCMC	1 cut(s)	1316
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	1 cut(s)	18
Bbv12I	GWGCWC	2 cut(s)	162, 229
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	2 cut(s)	357, 1201
BccI	CCATC	7 cut(s)	104, 544, 653, 757, 848, 934, 1015
BceAI	ACGGC	2 cut(s)	27, 75
BciT130I	CCWGG	3 cut(s)	222, 901, 1262
BclI	TGATCA	4 cut(s)	247, 355, 385, 976
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	3 cut(s)	453, 560, 1078
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	2 cut(s)	172, 699
BfuAI	ACCTGC	1 cut(s)	174
BglI	GCCNNNNNGGC	1 cut(s)	1054
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	3 cut(s)	108, 346, 1190
BlpI	GCTNAGC	1 cut(s)	156
BlsI	GCNGC	3 cut(s)	109, 347, 1191
Bme1390I	CCNGG	4 cut(s)	222, 316, 901, 1262
BmgT120I	GGNCC	2 cut(s)	1056, 1076
BmiI	GGNNCC	1 cut(s)	219
BmrFI	CCNGG	4 cut(s)	222, 316, 901, 1262
BmsI	GCATC	2 cut(s)	90, 502
BpiI	GAAGAC	1 cut(s)	18
BpmI	CTGGAG	3 cut(s)	61, 953, 1244
Bpu10I	CCTNAGC	1 cut(s)	417
Bpu1102I	GCTNAGC	1 cut(s)	156
Bpu14I	TTCGAA	1 cut(s)	646
BpuEI	CTTGAG	2 cut(s)	557, 563
BpuMI	CCSGG	1 cut(s)	316
BsaI	GGTCTC	1 cut(s)	1078
BsaJI	CCNNGG	5 cut(s)	9, 123, 289, 315, 1079
BsaWI	WCCGGW	1 cut(s)	54
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	2 cut(s)	21, 1251
Bse118I	RCCGGY	1 cut(s)	603
Bse1I	ACTGG	4 cut(s)	44, 936, 1016, 1186
BseAI	TCCGGA	1 cut(s)	54
BseBI	CCWGG	3 cut(s)	222, 901, 1262
BseDI	CCNNGG	5 cut(s)	9, 123, 289, 315, 1079
BseGI	GGATG	1 cut(s)	802
BseLI	CCNNNNNNNGG	2 cut(s)	21, 1251
BseMII	CTCAG	6 cut(s)	147, 408, 464, 573, 834, 1272
BseNI	ACTGG	4 cut(s)	44, 936, 1016, 1186
BseRI	GAGGAG	2 cut(s)	306, 777
BseSI	GKGCMC	1 cut(s)	1316
BseXI	GCAGC	2 cut(s)	357, 1201
BshFI	GGCC	4 cut(s)	14, 314, 1057, 1077
BshNI	GGYRCC	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	162, 229
BsiSI	CCGG	3 cut(s)	55, 315, 604
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	2 cut(s)	21, 1251
BsmAI	GTCTC	3 cut(s)	453, 560, 1078
BsmFI	GGGAC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	1291
BsnI	GGCC	4 cut(s)	14, 314, 1057, 1077
Bso31I	GGTCTC	1 cut(s)	1078
Bsp119I	TTCGAA	1 cut(s)	646
Bsp1286I	GDGCHC	3 cut(s)	162, 229, 1316
Bsp13I	TCCGGA	1 cut(s)	54
Bsp1720I	GCTNAGC	1 cut(s)	156
BspACI	CCGC	3 cut(s)	108, 139, 1322
BspANI	GGCC	4 cut(s)	14, 314, 1057, 1077
BspCNI	CTCAG	6 cut(s)	148, 409, 463, 574, 835, 1273
BspEI	TCCGGA	1 cut(s)	54
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	176
BspMI	ACCTGC	1 cut(s)	174
BspPI	GGATC	5 cut(s)	153, 482, 628, 740, 1343
BspT104I	TTCGAA	1 cut(s)	646
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	1078
BsrFI	RCCGGY	1 cut(s)	603
BsrI	ACTGG	4 cut(s)	44, 936, 1016, 1186
BssAI	RCCGGY	1 cut(s)	603
BssECI	CCNNGG	5 cut(s)	9, 123, 289, 315, 1079
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	3 cut(s)	222, 901, 1262
Bst4CI	ACNGT	3 cut(s)	887, 966, 1306
Bst6I	CTCTTC	1 cut(s)	1163
BstBI	TTCGAA	1 cut(s)	646
BstDEI	CTNAG	7 cut(s)	156, 417, 450, 582, 608, 843, 1281
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	1 cut(s)	802
BstMAI	GTCTC	3 cut(s)	453, 560, 1078
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 180, 402, 613, 701, 812, 1054, 1234, 1286
BstNI	CCWGG	3 cut(s)	222, 901, 1262
BstSCI	CCNGG	4 cut(s)	220, 314, 899, 1260
BstSFI	CTRYAG	2 cut(s)	172, 699
BstSLI	GKGCMC	1 cut(s)	1316
BstV1I	GCAGC	2 cut(s)	357, 1201
BstV2I	GAAGAC	1 cut(s)	18
BstX2I	RGATCY	1 cut(s)	483
BstXI	CCANNNNNNTGG	1 cut(s)	832
BstYI	RGATCY	1 cut(s)	483
BsuRI	GGCC	4 cut(s)	14, 314, 1057, 1077
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	1 cut(s)	802
BtsI	GCAGTG	1 cut(s)	1230
BtsIMutI	CAGTG	5 cut(s)	892, 929, 1023, 1179, 1230
BveI	ACCTGC	1 cut(s)	174
CciI	TCATGA	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	1056, 1076
Csp6I	GTAC	1 cut(s)	1307
CviQI	GTAC	1 cut(s)	1307
DdeI	CTNAG	7 cut(s)	156, 417, 450, 582, 608, 843, 1281
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	1163
EarI	CTCTTC	1 cut(s)	1163
EciI	GGCGGA	1 cut(s)	1337
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	123
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	1078
Eco53kI	GAGCTC	1 cut(s)	160
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	1056
EcoRI	GAATTC	1 cut(s)	64
EcoRII	CCWGG	3 cut(s)	220, 899, 1260
EcoT14I	CCWWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	123
FalI	AAGNNNNNCTT	4 cut(s)	762, 794, 1221, 1253
FaqI	GGGAC	1 cut(s)	105
FbaI	TGATCA	4 cut(s)	247, 355, 385, 976
Fnu4HI	GCNGC	3 cut(s)	108, 346, 1190
FokI	GGATG	1 cut(s)	809
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	108, 346, 1190
FspBI	CTAG	1 cut(s)	321
GluI	GCNGC	3 cut(s)	108, 346, 1190
GsuI	CTGGAG	3 cut(s)	61, 953, 1244
HaeIII	GGCC	4 cut(s)	14, 314, 1057, 1077
HapII	CCGG	3 cut(s)	55, 315, 604
HincII	GTYRAC	1 cut(s)	601
HindII	GTYRAC	1 cut(s)	601
HindIII	AAGCTT	3 cut(s)	539, 1235, 1389
HinfI	GANTC	9 cut(s)	446, 506, 527, 568, 631, 737, 874, 904, 1370
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	3 cut(s)	55, 315, 604
HphI	GGTGA	3 cut(s)	308, 377, 1036
Hpy166II	GTNNAC	3 cut(s)	500, 601, 1013
Hpy188I	TCNGA	9 cut(s)	70, 360, 511, 736, 844, 1083, 1167, 1213, 1362
Hpy188III	TCNNGA	5 cut(s)	55, 242, 389, 490, 908
Hpy8I	GTNNAC	3 cut(s)	500, 601, 1013
HpyAV	CCTTC	3 cut(s)	586, 767, 794
HpyCH4III	ACNGT	3 cut(s)	887, 966, 1306
HpyCH4V	TGCA	3 cut(s)	174, 1223, 1228
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 180, 402, 613, 701, 812, 1054, 1234, 1286
HpyF3I	CTNAG	7 cut(s)	156, 417, 450, 582, 608, 843, 1281
Kpn2I	TCCGGA	1 cut(s)	54
Ksp22I	TGATCA	4 cut(s)	247, 355, 385, 976
KspAI	GTTAAC	1 cut(s)	601
LmnI	GCTCC	3 cut(s)	262, 803, 1105
Lsp1109I	GCAGC	2 cut(s)	357, 1201
LweI	GCATC	2 cut(s)	90, 502
MaeI	CTAG	1 cut(s)	321
MaeIII	GTNAC	1 cut(s)	1126
MboII	GAAGA	9 cut(s)	18, 391, 478, 640, 782, 875, 930, 1180, 1352
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	1 cut(s)	483
MhlI	GDGCHC	3 cut(s)	162, 229, 1316
MluCI	AATT	6 cut(s)	34, 46, 64, 397, 654, 753
MlyI	GAGTC	4 cut(s)	455, 515, 536, 562
MmeI	TCCRAC	1 cut(s)	93
MroI	TCCGGA	1 cut(s)	54
MroXI	GAANNNNTTC	2 cut(s)	50, 777
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	4 cut(s)	234, 240, 270, 830
MspA1I	CMGCKG	1 cut(s)	110
MspI	CCGG	3 cut(s)	55, 315, 604
MspR9I	CCNGG	4 cut(s)	222, 316, 901, 1262
MunI	CAATTG	1 cut(s)	753
Mva1269I	GAATGC	1 cut(s)	1291
MvaI	CCWGG	3 cut(s)	222, 901, 1262
MwoI	GCNNNNNNNGC	9 cut(s)	11, 180, 402, 613, 701, 812, 1054, 1234, 1286
NciI	CCSGG	1 cut(s)	316
NlaIV	GGNNCC	1 cut(s)	219
NspV	TTCGAA	1 cut(s)	646
PagI	TCATGA	1 cut(s)	241
PaqCI	CACCTGC	1 cut(s)	174
PctI	GAATGC	1 cut(s)	1291
PdmI	GAANNNNTTC	2 cut(s)	50, 777
PfeI	GAWTC	5 cut(s)	631, 737, 874, 904, 1370
PfoI	TCCNGGA	1 cut(s)	1260
PkrI	GCNGC	3 cut(s)	109, 347, 1191
PleI	GAGTC	4 cut(s)	454, 514, 535, 562
PpsI	GAGTC	4 cut(s)	454, 514, 535, 562
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	3 cut(s)	220, 899, 1260
PspGI	CCWGG	3 cut(s)	220, 899, 1260
PspN4I	GGNNCC	1 cut(s)	219
PspPI	GGNCC	2 cut(s)	1056, 1076
PstI	CTGCAG	1 cut(s)	176
PsuI	RGATCY	1 cut(s)	483
RsaI	GTAC	1 cut(s)	1308
RsaNI	GTAC	1 cut(s)	1307
RseI	CAYNNNNRTG	4 cut(s)	234, 240, 270, 830
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	3 cut(s)	108, 346, 1190
Sau96I	GGNCC	2 cut(s)	1056, 1076
SchI	GAGTC	4 cut(s)	455, 515, 536, 562
ScrFI	CCNGG	4 cut(s)	222, 316, 901, 1262
SduI	GDGCHC	3 cut(s)	162, 229, 1316
SfaNI	GCATC	2 cut(s)	90, 502
SfcI	CTRYAG	2 cut(s)	172, 699
SfuI	TTCGAA	1 cut(s)	646
SmiMI	CAYNNNNRTG	4 cut(s)	234, 240, 270, 830
SmlI	CTYRAG	2 cut(s)	542, 572
SmoI	CTYRAG	2 cut(s)	542, 572
Sse9I	AATT	6 cut(s)	34, 46, 64, 397, 654, 753
SsiI	CCGC	3 cut(s)	108, 139, 1322
SspI	AATATT	1 cut(s)	1135
SspMI	CTAG	1 cut(s)	321
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	4 cut(s)	220, 314, 899, 1260
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	3 cut(s)	887, 966, 1306
TaqI	TCGA	3 cut(s)	148, 646, 880
TaqII	GACCGA	2 cut(s)	303, 443
TasI	AATT	6 cut(s)	34, 46, 64, 397, 654, 753
TatI	WGTACW	1 cut(s)	1306
TauI	GCSGC	1 cut(s)	110
TfiI	GAWTC	5 cut(s)	631, 737, 874, 904, 1370
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TscAI	CASTG	5 cut(s)	892, 936, 1023, 1186, 1230
TseI	GCWGC	2 cut(s)	345, 1189
TspDTI	ATGAA	7 cut(s)	18, 392, 641, 696, 813, 1230, 1362
TspGWI	ACGGA	1 cut(s)	1315
TspRI	CASTG	5 cut(s)	892, 936, 1023, 1186, 1230
XapI	RAATTY	1 cut(s)	64
XcmI	CCANNNNNNNNNTGG	2 cut(s)	790, 1099
XmnI	GAANNNNTTC	2 cut(s)	50, 777
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.