Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8445931.1

Orthogroup ID

OG0010201

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1542

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8445931.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 995 bp

atgagcatgaagaatgatcaggatagcaattacagctatggattggctgaggctttgaccgatgagattgaacaagagtctcaggttttcggggaggttgtgaggatcaaagagatcttccagaatagtgaacatgagtctgatgctgtattgtttgagtcgttgaggaagcttgagttgatggctctgtctgtggagactctcaaggcaactgagattgggaaggctgttaaccggctaagaaagcatggatcaatgaagattcgtaatcttgttcgaacactaattgatgggtggaaagtcatggtagatgaatgggtcaatgctactacagctattgcttctgggggaacagaagttatttcggattctgttgatccatcaattgatgatgactttgaagaaggacttcccactcctccattggatgaaggagctttctttgccactcaaaccacctcaatggaactctctgagttctttgatggtatggaagattatgggaatcctcgaaacagtgggcaatataccaggaatcgtgaaaatggaagaaaaccatcactggagaaacaaaatgttgtgaagcaggaacaacagtatgttagtgatcagggaaatgtgcttcccaagaaaataaaaagtgaaccagtgatggtgaaacaagaagttgatgtgaagccaaataggccctcaaacaccaactctggccctcggagacctcccaaaataagtatggagcgaaagggtgtcagtagtgtaacaaatattgagcaaagaacagataaggtttccattcagaagaggcaactcactggtcagcagcaagataaatacaagtgttcagatgaagttgcagtgcaagtgaagcttgaagccacaaaaaggaaactccaggagagttatcaacaagctgagaatgccaagaagcaacggacagtacagggcacatgggcggagattatgagcaaggaagaagttgatccattgggtcagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med26

Protein Analysis

331

Amino Acids

37.38

Weight (kDa)

5.21

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010201)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G10820 AT3G10820 AT5G05140
fragaria_vesca	FvH4_6g37520 FvH4_6g37520
malus_domestica	MD14G1088300.v1.1
prunus_persica	Prupe.7G028700_v2.0.a1 Prupe.7G028700_v2.0.a1
pyrus_communis	pycom14g07840
rosa_chinensis	RchiOBHm_Chr2g0150411
rosa_laevigata	RLG00000020496
rosa_multiflora	Rmu_co8445931.1_g000001 Rmu_sc0002179.1_g000015 Rmu_ssc0000480.1_g000013
rosa_roxburghii	Rroxscaffold_2G00097150
rosa_rugosa	Rorug02G0421100
rosa_samantha	Rh2AG480400 Rh2BG492500 Rh2CG466700 Rh2DG501300
rosa_wichuraiana	Rw2G039210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	953
AclWI	GGATC	4 cut(s)	113, 259, 371, 974
AfaI	GTAC	1 cut(s)	939
AfiI	CCNNNNNNNGG	1 cut(s)	882
AgsI	TTSAA	3 cut(s)	71, 401, 872
AjnI	CCWGG	2 cut(s)	530, 891
AluBI	AGCT	6 cut(s)	36, 172, 335, 437, 868, 911
AluI	AGCT	6 cut(s)	36, 172, 335, 437, 868, 911
Alw26I	GTCTC	3 cut(s)	84, 191, 709
AlwI	GGATC	4 cut(s)	113, 259, 371, 974
AoxI	GGCC	2 cut(s)	686, 706
ApeKI	GCWGC	1 cut(s)	820
Asp700I	GAANNNNTTC	1 cut(s)	408
AspS9I	GGNCC	2 cut(s)	687, 707
AsuHPI	GGTGA	1 cut(s)	667
AsuII	TTCGAA	1 cut(s)	277
BaeGI	GKGCMC	1 cut(s)	947
BbvCI	CCTCAGC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	832
BccI	CCATC	6 cut(s)	175, 284, 388, 479, 565, 646
BciT130I	CCWGG	2 cut(s)	532, 893
BclI	TGATCA	2 cut(s)	16, 607
BcoDI	GTCTC	3 cut(s)	84, 191, 709
BfmI	CTRYAG	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	685
BglII	AGATCT	1 cut(s)	114
BisI	GCNGC	1 cut(s)	821
BlsI	GCNGC	1 cut(s)	822
Bme1390I	CCNGG	2 cut(s)	532, 893
BmgT120I	GGNCC	2 cut(s)	687, 707
BmrFI	CCNGG	2 cut(s)	532, 893
BmsI	GCATC	1 cut(s)	133
BpmI	CTGGAG	2 cut(s)	584, 875
Bpu10I	CCTNAGC	1 cut(s)	48
Bpu14I	TTCGAA	1 cut(s)	277
BpuEI	CTTGAG	2 cut(s)	188, 194
BsaI	GGTCTC	1 cut(s)	709
BsaJI	CCNNGG	1 cut(s)	710
Bsc4I	CCNNNNNNNGG	1 cut(s)	882
Bse118I	RCCGGY	1 cut(s)	234
Bse1I	ACTGG	3 cut(s)	567, 647, 817
BseBI	CCWGG	2 cut(s)	532, 893
BseDI	CCNNGG	1 cut(s)	710
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	882
BseMII	CTCAG	5 cut(s)	39, 95, 204, 465, 903
BseNI	ACTGG	3 cut(s)	567, 647, 817
BseRI	GAGGAG	1 cut(s)	408
BseSI	GKGCMC	1 cut(s)	947
BseXI	GCAGC	1 cut(s)	832
BshFI	GGCC	2 cut(s)	688, 708
BsiSI	CCGG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	882
BsmAI	GTCTC	3 cut(s)	84, 191, 709
BsmI	GAATGC	1 cut(s)	922
BsnI	GGCC	2 cut(s)	688, 708
Bso31I	GGTCTC	1 cut(s)	709
Bsp119I	TTCGAA	1 cut(s)	277
Bsp1286I	GDGCHC	1 cut(s)	947
Bsp143I	GATC	7 cut(s)	16, 105, 114, 251, 376, 607, 979
BspACI	CCGC	1 cut(s)	953
BspANI	GGCC	2 cut(s)	688, 708
BspCNI	CTCAG	5 cut(s)	40, 94, 205, 466, 904
BspPI	GGATC	4 cut(s)	113, 259, 371, 974
BspT104I	TTCGAA	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	709
BsrFI	RCCGGY	1 cut(s)	234
BsrI	ACTGG	3 cut(s)	567, 647, 817
BssAI	RCCGGY	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	710
BssMI	GATC	7 cut(s)	16, 105, 114, 251, 376, 607, 979
Bst2UI	CCWGG	2 cut(s)	532, 893
Bst4CI	ACNGT	3 cut(s)	518, 597, 937
Bst6I	CTCTTC	1 cut(s)	794
BstBI	TTCGAA	1 cut(s)	277
BstDEI	CTNAG	6 cut(s)	48, 81, 213, 239, 474, 912
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	7 cut(s)	19, 108, 117, 254, 379, 610, 982
BstMAI	GTCTC	3 cut(s)	84, 191, 709
BstMBI	GATC	7 cut(s)	16, 105, 114, 251, 376, 607, 979
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 244, 332, 443, 685, 865, 917
BstNI	CCWGG	2 cut(s)	532, 893
BstSCI	CCNGG	2 cut(s)	530, 891
BstSFI	CTRYAG	1 cut(s)	330
BstSLI	GKGCMC	1 cut(s)	947
BstV1I	GCAGC	1 cut(s)	832
BstX2I	RGATCY	1 cut(s)	114
BstXI	CCANNNNNNTGG	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	688, 708
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	5 cut(s)	523, 560, 654, 810, 861
Cfr10I	RCCGGY	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	687, 707
Csp6I	GTAC	1 cut(s)	938
CviAII	CATG	5 cut(s)	7, 134, 248, 304, 948
CviQI	GTAC	1 cut(s)	938
DdeI	CTNAG	6 cut(s)	48, 81, 213, 239, 474, 912
DpnI	GATC	7 cut(s)	18, 107, 116, 253, 378, 609, 981
DpnII	GATC	7 cut(s)	16, 105, 114, 251, 376, 607, 979
Eam1104I	CTCTTC	1 cut(s)	794
EarI	CTCTTC	1 cut(s)	794
EciI	GGCGGA	1 cut(s)	968
Eco31I	GGTCTC	1 cut(s)	709
EcoO109I	RGGNCCY	1 cut(s)	687
EcoRII	CCWGG	2 cut(s)	530, 891
FaeI	CATG	5 cut(s)	10, 137, 251, 307, 951
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 852, 884
FatI	CATG	5 cut(s)	6, 133, 247, 303, 947
FbaI	TGATCA	2 cut(s)	16, 607
Fnu4HI	GCNGC	1 cut(s)	821
FokI	GGATG	1 cut(s)	440
Fsp4HI	GCNGC	1 cut(s)	821
GluI	GCNGC	1 cut(s)	821
GsuI	CTGGAG	2 cut(s)	584, 875
HaeIII	GGCC	2 cut(s)	688, 708
HapII	CCGG	1 cut(s)	235
Hin1II	CATG	5 cut(s)	10, 137, 251, 307, 951
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HindIII	AAGCTT	2 cut(s)	170, 866
HinfI	GANTC	8 cut(s)	77, 137, 158, 199, 262, 368, 505, 535
HpaI	GTTAAC	1 cut(s)	232
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	1 cut(s)	667
Hpy166II	GTNNAC	3 cut(s)	131, 232, 644
Hpy188I	TCNGA	7 cut(s)	142, 367, 475, 714, 798, 844, 993
Hpy188III	TCNNGA	3 cut(s)	20, 121, 539
Hpy8I	GTNNAC	3 cut(s)	131, 232, 644
HpyAV	CCTTC	3 cut(s)	217, 398, 425
HpyCH4III	ACNGT	3 cut(s)	518, 597, 937
HpyCH4V	TGCA	2 cut(s)	854, 859
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 244, 332, 443, 685, 865, 917
HpyF3I	CTNAG	6 cut(s)	48, 81, 213, 239, 474, 912
Hsp92II	CATG	5 cut(s)	10, 137, 251, 307, 951
Ksp22I	TGATCA	2 cut(s)	16, 607
KspAI	GTTAAC	1 cut(s)	232
Kzo9I	GATC	7 cut(s)	16, 105, 114, 251, 376, 607, 979
LmnI	GCTCC	2 cut(s)	434, 736
Lsp1109I	GCAGC	1 cut(s)	832
LweI	GCATC	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	757
MalI	GATC	7 cut(s)	18, 107, 116, 253, 378, 609, 981
MboI	GATC	7 cut(s)	16, 105, 114, 251, 376, 607, 979
MboII	GAAGA	8 cut(s)	22, 109, 271, 413, 506, 561, 811, 983
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	947
MluCI	AATT	3 cut(s)	28, 285, 384
MlyI	GAGTC	4 cut(s)	86, 146, 167, 193
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	231
MslI	CAYNNNNRTG	1 cut(s)	461
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	2 cut(s)	532, 893
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	922
MvaI	CCWGG	2 cut(s)	532, 893
MwoI	GCNNNNNNNGC	7 cut(s)	33, 244, 332, 443, 685, 865, 917
NdeII	GATC	7 cut(s)	16, 105, 114, 251, 376, 607, 979
NlaIII	CATG	5 cut(s)	10, 137, 251, 307, 951
NspV	TTCGAA	1 cut(s)	277
PctI	GAATGC	1 cut(s)	922
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	4 cut(s)	262, 368, 505, 535
PfoI	TCCNGGA	1 cut(s)	891
PkrI	GCNGC	1 cut(s)	822
PleI	GAGTC	4 cut(s)	85, 145, 166, 193
PpsI	GAGTC	4 cut(s)	85, 145, 166, 193
Psp6I	CCWGG	2 cut(s)	530, 891
PspGI	CCWGG	2 cut(s)	530, 891
PspPI	GGNCC	2 cut(s)	687, 707
PsuI	RGATCY	1 cut(s)	114
RsaI	GTAC	1 cut(s)	939
RsaNI	GTAC	1 cut(s)	938
RseI	CAYNNNNRTG	1 cut(s)	461
SaqAI	TTAA	1 cut(s)	231
SatI	GCNGC	1 cut(s)	821
Sau3AI	GATC	7 cut(s)	16, 105, 114, 251, 376, 607, 979
Sau96I	GGNCC	2 cut(s)	687, 707
SchI	GAGTC	4 cut(s)	86, 146, 167, 193
ScrFI	CCNGG	2 cut(s)	532, 893
SduI	GDGCHC	1 cut(s)	947
SfaNI	GCATC	1 cut(s)	133
SfcI	CTRYAG	1 cut(s)	330
SfuI	TTCGAA	1 cut(s)	277
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	2 cut(s)	173, 203
SmoI	CTYRAG	2 cut(s)	173, 203
Sse9I	AATT	3 cut(s)	28, 285, 384
SsiI	CCGC	1 cut(s)	953
SspI	AATATT	1 cut(s)	766
StyD4I	CCNGG	2 cut(s)	530, 891
TaaI	ACNGT	3 cut(s)	518, 597, 937
TaqI	TCGA	2 cut(s)	277, 511
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	3 cut(s)	28, 285, 384
TatI	WGTACW	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	262, 368, 505, 535
Tru1I	TTAA	1 cut(s)	231
Tru9I	TTAA	1 cut(s)	231
TscAI	CASTG	5 cut(s)	523, 567, 654, 817, 861
TseI	GCWGC	1 cut(s)	820
TspDTI	ATGAA	5 cut(s)	23, 272, 327, 444, 861
TspGWI	ACGGA	1 cut(s)	946
TspRI	CASTG	5 cut(s)	523, 567, 654, 817, 861
XcmI	CCANNNNNNNNNTGG	2 cut(s)	421, 730
XmnI	GAANNNNTTC	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.