Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0003156

Physical Location & Seq

Genomic Coordinates Forward (+)

6085783 .. 6090988

Gene Structure 5206 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G032700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGAAAATCACGTCCATCCTCAGATGCAAGAGTCATCAGCAATGGGCCTTCAGTCTCTTGGTGGAGCTGAGAACTTCTCTAGAGCGTCCTCTAATGGCTATCTATCTAGGACAAAATCGAATTTACAATCTGGTTTCAACCGTTCCAACACAGCTACTGCAATATTGAAACAAGCCAAGAGTTCATCTAGATCGTTTGATGGTGGTAGTAGATTGCTAGACAGATATAAGCTAGTCCCAGATGCAACTGGGAAAGATAACACAAACAGTGCCAGTGATCAGACTCAGATGGATGAGACAATTGGTAGACATGAGGAGAGGGCAAATGGATCTTTGGCTGAACAATACAGGACAGAGCATGTGGTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0005874 GO:0006996 GO:0007010 GO:0008017 GO:0008092 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0071840 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

124

Amino Acids

13.45

Weight (kDa)

6.41

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14840 AT1G14840 AT1G24764 AT1G24764 AT1G24764 AT1G68060 AT2G01750 AT2G01750
fragaria_vesca	FvH4_4g33511 FvH4_4g33511 FvH4_4g33511
malus_domestica	MD00G1075100.v1.1 MD12G1095700.v1.1 MD13G1020100.v1.1 MD16G1018200.v1.1
prunus_persica	Prupe.1G333700_v2.0.a1 Prupe.7G032400_v2.0.a1 Prupe.7G032700_v2.0.a1
pyrus_communis	pycom12g08260 pycom13g01700 pycom14g08120 pycom16g01650
rosa_chinensis	RchiOBHm_Chr3g0480111 RchiOBHm_Chr4g0443021
rosa_laevigata	RLG00000005962
rosa_multiflora	Rmu_sc0006604.1_g000002 Rmu_ssc0000204.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383650
rosa_rugosa	Rorug04G0343800 Rorug04G0343800
rosa_samantha	Rh3AG231900 Rh3AG232000 Rh4AG398000 Rh4BG409500 Rh4CG425000 Rh4DG404300
rosa_wichuraiana	Rw4G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	337
AcsI	RAATTY	1 cut(s)	121
AcuI	CTGAAG	1 cut(s)	35
AgsI	TTSAA	2 cut(s)	139, 169
AjiI	CACGTC	1 cut(s)	13
AluBI	AGCT	3 cut(s)	68, 155, 232
AluI	AGCT	3 cut(s)	68, 155, 232
Alw26I	GTCTC	2 cut(s)	60, 290
AlwI	GGATC	1 cut(s)	337
AlwNI	CAGNNNCTG	1 cut(s)	158
AoxI	GGCC	1 cut(s)	46
ApoI	RAATTY	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	46
BccI	CCATC	3 cut(s)	24, 194, 283
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	2 cut(s)	60, 290
BfaI	CTAG	5 cut(s)	81, 108, 189, 218, 233
BmgBI	CACGTC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	258
BmsI	GCATC	2 cut(s)	15, 232
BmuI	ACTGGG	1 cut(s)	258
BplI	GAGNNNNNCTC	2 cut(s)	62, 94
Bse1I	ACTGG	2 cut(s)	253, 273
Bse3DI	GCAATG	1 cut(s)	48
BseGI	GGATG	2 cut(s)	16, 298
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	35, 60, 299
BseNI	ACTGG	2 cut(s)	253, 273
BseRI	GAGGAG	1 cut(s)	329
BshFI	GGCC	1 cut(s)	48
BslFI	GGGAC	1 cut(s)	221
BsmAI	GTCTC	2 cut(s)	60, 290
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	191, 277, 329
BspANI	GGCC	1 cut(s)	48
BspCNI	CTCAG	3 cut(s)	34, 61, 298
BspPI	GGATC	1 cut(s)	337
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	253, 273
BssMI	GATC	3 cut(s)	191, 277, 329
Bst4CI	ACNGT	2 cut(s)	143, 269
BstDEI	CTNAG	3 cut(s)	21, 69, 285
BstF5I	GGATG	2 cut(s)	16, 298
BstKTI	GATC	3 cut(s)	194, 280, 332
BstMAI	GTCTC	2 cut(s)	60, 290
BstMBI	GATC	3 cut(s)	191, 277, 329
BstNSI	RCATGY	1 cut(s)	362
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
BsuRI	GGCC	1 cut(s)	48
BtrI	CACGTC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	16, 298
BtsIMutI	CAGTG	2 cut(s)	274, 280
CaiI	CAGNNNCTG	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	46
CseI	GACGC	1 cut(s)	75
CviAII	CATG	2 cut(s)	311, 359
CviJI	RGCY	7 cut(s)	48, 68, 99, 155, 176, 232, 338
CviKI_1	RGCY	7 cut(s)	48, 68, 99, 155, 176, 232, 338
DdeI	CTNAG	3 cut(s)	21, 69, 285
DpnI	GATC	3 cut(s)	193, 279, 331
DpnII	GATC	3 cut(s)	191, 277, 329
Eco57I	CTGAAG	1 cut(s)	35
FaeI	CATG	2 cut(s)	314, 362
FaiI	YATR	3 cut(s)	228, 312, 360
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	2 cut(s)	310, 358
FbaI	TGATCA	1 cut(s)	277
FblI	GTMKAC	1 cut(s)	307
FokI	GGATG	2 cut(s)	3, 305
FspBI	CTAG	5 cut(s)	81, 108, 189, 218, 233
HaeIII	GGCC	1 cut(s)	48
HgaI	GACGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	314, 362
HinfI	GANTC	2 cut(s)	32, 283
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	3 cut(s)	24, 282, 288
Hpy188III	TCNNGA	2 cut(s)	81, 189
Hpy8I	GTNNAC	1 cut(s)	308
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	2 cut(s)	143, 269
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	28, 161, 245
HpyF3I	CTNAG	3 cut(s)	21, 69, 285
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	2 cut(s)	314, 362
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	3 cut(s)	191, 277, 329
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	5 cut(s)	117, 234, 252, 286, 334
LweI	GCATC	2 cut(s)	15, 232
MaeI	CTAG	5 cut(s)	81, 108, 189, 218, 233
MaeII	ACGT	1 cut(s)	12
MalI	GATC	3 cut(s)	193, 279, 331
MboI	GATC	3 cut(s)	191, 277, 329
MfeI	CAATTG	1 cut(s)	300
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	2 cut(s)	121, 300
MlyI	GAGTC	2 cut(s)	41, 277
MmeI	TCCRAC	1 cut(s)	171
MnlI	CCTC	4 cut(s)	30, 100, 307, 312
MunI	CAATTG	1 cut(s)	300
NdeII	GATC	3 cut(s)	191, 277, 329
NlaIII	CATG	2 cut(s)	314, 362
NspI	RCATGY	1 cut(s)	362
PleI	GAGTC	2 cut(s)	40, 277
PpsI	GAGTC	2 cut(s)	40, 277
PspPI	GGNCC	1 cut(s)	46
PstNI	CAGNNNCTG	1 cut(s)	158
PsuI	RGATCY	1 cut(s)	329
Sau3AI	GATC	3 cut(s)	191, 277, 329
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	2 cut(s)	41, 277
SetI	ASST	4 cut(s)	15, 70, 157, 234
SfaNI	GCATC	2 cut(s)	15, 232
Sse9I	AATT	2 cut(s)	121, 300
SspI	AATATT	1 cut(s)	165
SspMI	CTAG	5 cut(s)	81, 108, 189, 218, 233
TaaI	ACNGT	2 cut(s)	143, 269
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	119
TasI	AATT	2 cut(s)	121, 300
TscAI	CASTG	2 cut(s)	274, 280
TspDTI	ATGAA	1 cut(s)	174
TspRI	CASTG	2 cut(s)	274, 280
XapI	RAATTY	1 cut(s)	121
XbaI	TCTAGA	2 cut(s)	80, 188
XceI	RCATGY	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	307
XspI	CTAG	5 cut(s)	81, 108, 189, 218, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.