Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003156

Physical Location & Seq

Genomic Coordinates Forward (+)

51607113 .. 51612848

Gene Structure 5736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0343800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2076 bp

ATGGCGAGTAGCGGTGGCGGCGACGAAGACGCCGATGCGGTGCTCAGCGACGTAGAGGGCGACGATCCGGTGCCGATCGTGATTAAGAATTCGTCGCCGGAACAAATCTCCGCCGACCGGTTCCGCGAGCTCCTCGCCGAGCTAGATCGCGAGCGGCAGGCGCGGGAGGCGGTGGAGAATTCGAAATCGGACCTGCAAGTCCAGTTCGGGAGATTAAAGGCTCTGGCGCACGAGGCGATTAGGAAGCGAGACGAGTGGGGGAGGCAGAGAGACGAGGCCTTGCGTGAGAAGGAAGAACTGTCCAGAACGAACGAGAAGGTCTCGGCGGAATTGGCAGAAGCTAATAGAGCAAGAGACGAGGCTTTGCAGCACAAGGATGAGATTGCGAAGCAGTTAGACGACGTCGTTAGGGAGAAGGATGGAATGAGGGCTGAGATTGGGAATTCCACGCATATGCTCATGTCTGGGATTGATAAGATTTCAGGTAAAGTTAGTAATTTCAAGAATTTCGCGGCGGGGGGATTGCCGAGGTCGAATAAGTACACCACCGGATTGCCGGCGGTGGCTTACGGGGTTATAAAGAGGACGAATGAGATTGTGGAAGAGCTTGTTAGACAGATTGAGGCCACTGCCAAGTCTAGGAACGAAACTAGGGAGCAGATGGATCAGAGGAACTATGAGATTGCCATTGAGATTTCGCAGCTGGAGGCCACCATTGGTGGTTTGACAGAAGAGGTTGCGAAGAAGACGTCTGTGGTTGAGAGTTTGGAGAAAAGTGTTGCAGAGAGGAGTGGGAAAATGTCGGAGATTGAGAGGGAGATGGAGGATAAGTTGAGAAGGGCGGAGAGTGAGGCTTCCGAGTTGAGGCAGTTAGCTAGAGAGTATGATGATAAGTTGACGAATTTGGACTCGAAAATGGACGAGCAGAGGCCTTTACTCGTTGATCAGTTGAATTTGGTGTCGAAAATTCATGACCGGCTATATCATGTTATGAAAATAGTTGATGCCAACAATTTGGATCAGTCAGATTATTCAGAATCCCTGTTTCTCCCTCAAGAAACAGACATGGAGGAGAACCTGCGTGCATCTTTGGCTGGGATGGAATCTATTCATGAATTAACGAGGATTGTTATGGAAAAAGCAAGGGATTTGGTTGAGGAAAAGAATCATGAAATCAAGAGTTTGGATGAAACAGCGACTCGGTTAGTTAAAGAAAAGGAACAAATTGGATCCTTACTTAGGAGCGCTTTGTCAAATAGGATGACATCAAATCCATCTTCTAAGACAAGGGAATTGTTTCAAGTTGCAGAGAATGGTTTGAGGGAGGCTGGGATAGATTTTAAATTTAATAAGCATATGGGGAATCGGAAAGTGGATGCACTTGAGGCTGAGGACGATGAAGTATACACATTAGCTGGTGCTTTGGAGAATATTGTTAAGGCATCTCAGCTGGAGATTATAGAGCTGCAGCATTCTGTGGAAGAACTAAGGGCAGAGATGAGTTTACTTAAACAGCATGTAGAGGCCCAAGCTAAGGAGCTCGACCATAGAATGCATAAAATTGAGGAACTTGAAGAGAAGGAGAGACTAGCGAATGAAAGTATTGAAGGGCTAATGATGGACATTGCTGCTGCTGAAGAAGAAATAACAAGATGGAAAGTCGCAGCAGAGCAAGAAGCTGCAGCAGGCACAGGTGTAGAACAAGAGTTTGTGGCACAGTTATCGGCACTTAAGCAGGAACTTGAAGAGGCAAAGCAGGCAATTGTGGAGTCAGAGAAGAAGCTCAAGTTCAAAGAAGAGACAGCAGATGCTGCCATGGCAGCTAGAGATGCTGCGGAGAAATCCTTAAGATTGGCAGACTCGAGGGCATCCAGGCTCCGAGATAGAGTAGAGGAGCTTACCCGTCAACTTGAAGAATTTGAAAATCGGGAGGACTTAAGGAGAGGCCTGGGTGGACCTAGATATATATGTTGGCCCTGGCAGTGGCTTGGGCTGGACTTTGTAGGGTTCAGTCGCTCTGATACAGAACAACAGAGTAGTTCAAATGAAATGGAGCTTGCTGAACCTCTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010005 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0055028 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

691

Amino Acids

78.32

Weight (kDa)

4.86

Isoelectric Point (pI)

50.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14840 AT1G14840 AT1G24764 AT1G24764 AT1G24764 AT1G68060 AT2G01750 AT2G01750
fragaria_vesca	FvH4_4g33511 FvH4_4g33511 FvH4_4g33511
malus_domestica	MD00G1075100.v1.1 MD12G1095700.v1.1 MD13G1020100.v1.1 MD16G1018200.v1.1
prunus_persica	Prupe.1G333700_v2.0.a1 Prupe.7G032400_v2.0.a1 Prupe.7G032700_v2.0.a1
pyrus_communis	pycom12g08260 pycom13g01700 pycom14g08120 pycom16g01650
rosa_chinensis	RchiOBHm_Chr3g0480111 RchiOBHm_Chr4g0443021
rosa_laevigata	RLG00000005962
rosa_multiflora	Rmu_sc0006604.1_g000002 Rmu_ssc0000204.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383650
rosa_rugosa	Rorug04G0343800 Rorug04G0343800
rosa_samantha	Rh3AG231900 Rh3AG232000 Rh4AG398000 Rh4BG409500 Rh4CG425000 Rh4DG404300
rosa_wichuraiana	Rw4G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AasI	GACNNNNNNGTC	1 cut(s)	197
AatII	GACGTC	2 cut(s)	405, 752
Acc36I	ACCTGC	2 cut(s)	201, 1086
AccB1I	GGYRCC	1 cut(s)	70
AccBSI	CCGCTC	1 cut(s)	154
AccI	GTMKAC	1 cut(s)	1404
AccII	CGCG	4 cut(s)	126, 150, 163, 512
AclWI	GGATC	5 cut(s)	59, 672, 1026, 1224, 1237
AcsI	RAATTY	9 cut(s)	88, 178, 442, 505, 901, 952, 966, 1343, 1916
AcuI	CTGAAG	1 cut(s)	1656
AcyI	GRCGYC	3 cut(s)	30, 402, 749
AfaI	GTAC	1 cut(s)	542
AfeI	AGCGCT	1 cut(s)	1246
AfiI	CCNNNNNNNGG	6 cut(s)	117, 639, 864, 1239, 1534, 1983
AflII	CTTAAG	3 cut(s)	1730, 1846, 1936
AgeI	ACCGGT	1 cut(s)	117
AjnI	CCWGG	3 cut(s)	1871, 1947, 1976
Alw21I	GWGCWC	3 cut(s)	45, 132, 1542
Alw26I	GTCTC	6 cut(s)	243, 264, 325, 348, 1579, 1793
AlwI	GGATC	5 cut(s)	59, 672, 1026, 1224, 1237
AlwNI	CAGNNNCTG	1 cut(s)	1811
Ama87I	CYCGRG	1 cut(s)	1861
Aor51HI	AGCGCT	1 cut(s)	1246
AoxI	GGCC	7 cut(s)	276, 624, 708, 929, 1524, 1945, 1973
ApoI	RAATTY	9 cut(s)	88, 178, 442, 505, 901, 952, 966, 1343, 1916
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
AsiGI	ACCGGT	1 cut(s)	117
Asp700I	GAANNNNTTC	3 cut(s)	1107, 1296, 2067
AspLEI	GCGC	3 cut(s)	163, 229, 1247
AspS9I	GGNCC	4 cut(s)	190, 1525, 1955, 1974
AsuII	TTCGAA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	1861
AvaII	GGWCC	2 cut(s)	190, 1955
BamHI	GGATCC	1 cut(s)	1229
BanI	GGYRCC	1 cut(s)	70
BanII	GRGCYC	2 cut(s)	132, 1542
BauI	CACGAG	1 cut(s)	230
BbsI	GAAGAC	2 cut(s)	33, 752
Bbv12I	GWGCWC	3 cut(s)	45, 132, 1542
BbvCI	CCTCAGC	1 cut(s)	1389
BccI	CCATC	7 cut(s)	413, 655, 814, 1093, 1282, 1612, 1647
BcgI	CGANNNNNNTGC	2 cut(s)	1704, 1738
BciT130I	CCWGG	3 cut(s)	1873, 1949, 1978
BclI	TGATCA	1 cut(s)	943
BcoDI	GTCTC	6 cut(s)	243, 264, 325, 348, 1579, 1793
BfaI	CTAG	7 cut(s)	143, 639, 651, 876, 1589, 1824, 1959
BfmI	CTRYAG	2 cut(s)	1466, 1680
BfoI	RGCGCY	1 cut(s)	1248
BfrI	CTTAAG	3 cut(s)	1730, 1846, 1936
BfuAI	ACCTGC	2 cut(s)	201, 1086
BlpI	GCTNAGC	1 cut(s)	44
Bme1390I	CCNGG	3 cut(s)	1873, 1949, 1978
Bme18I	GGWCC	2 cut(s)	190, 1955
BmeT110I	CYCGRG	1 cut(s)	1861
BmgT120I	GGNCC	4 cut(s)	190, 1525, 1955, 1974
BmiI	GGNNCC	4 cut(s)	72, 122, 1231, 1877
BmrFI	CCNGG	3 cut(s)	1873, 1949, 1978
BmsI	GCATC	8 cut(s)	25, 994, 1094, 1366, 1451, 1798, 1819, 1877
BpiI	GAAGAC	2 cut(s)	33, 752
BplI	GAGNNNNNCTC	2 cut(s)	305, 337
BpmI	CTGGAG	2 cut(s)	725, 1472
Bpu10I	CCTNAGC	2 cut(s)	1389, 1533
Bpu1102I	GCTNAGC	1 cut(s)	44
Bpu14I	TTCGAA	1 cut(s)	182
BpuEI	CTTGAG	3 cut(s)	1038, 1403, 1769
BsaHI	GRCGYC	3 cut(s)	30, 402, 749
BsaI	GGTCTC	1 cut(s)	325
BsaJI	CCNNGG	4 cut(s)	527, 1815, 1948, 1976
BsaWI	WCCGGW	3 cut(s)	67, 117, 548
BsaXI	ACNNNNNCTCC	2 cut(s)	815, 845
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 639, 864, 1239, 1534, 1983
Bse118I	RCCGGY	3 cut(s)	117, 556, 975
Bse1I	ACTGG	1 cut(s)	202
Bse3DI	GCAATG	1 cut(s)	1623
BseBI	CCWGG	3 cut(s)	1873, 1949, 1978
BseDI	CCNNGG	4 cut(s)	527, 1815, 1948, 1976
BseGI	GGATG	7 cut(s)	382, 424, 1104, 1192, 1266, 1381, 1868
BseLI	CCNNNNNNNGG	6 cut(s)	117, 639, 864, 1239, 1534, 1983
BseMI	GCAATG	1 cut(s)	1623
BseMII	CTCAG	4 cut(s)	58, 423, 1380, 1460
BseNI	ACTGG	1 cut(s)	202
BseRI	GAGGAG	4 cut(s)	122, 802, 1085, 1907
BseYI	CCCAGC	2 cut(s)	1094, 1328
Bsh1236I	CGCG	4 cut(s)	126, 150, 163, 512
Bsh1285I	CGRYCG	2 cut(s)	78, 118
BshFI	GGCC	7 cut(s)	278, 626, 710, 931, 1526, 1947, 1975
BshNI	GGYRCC	1 cut(s)	70
BshTI	ACCGGT	1 cut(s)	117
BsiEI	CGRYCG	2 cut(s)	78, 118
BsiHKAI	GWGCWC	3 cut(s)	45, 132, 1542
BsiHKCI	CYCGRG	1 cut(s)	1861
BsiSI	CCGG	6 cut(s)	68, 98, 118, 549, 557, 976
BslI	CCNNNNNNNGG	6 cut(s)	117, 639, 864, 1239, 1534, 1983
BsmAI	GTCTC	6 cut(s)	243, 264, 325, 348, 1579, 1793
BsmBI	CGTCTC	3 cut(s)	243, 264, 348
BsmI	GAATGC	2 cut(s)	1471, 1557
BsnI	GGCC	7 cut(s)	278, 626, 710, 931, 1526, 1947, 1975
Bso31I	GGTCTC	1 cut(s)	325
BsoBI	CYCGRG	1 cut(s)	1861
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	3 cut(s)	45, 132, 1542
Bsp143I	GATC	7 cut(s)	64, 75, 145, 664, 943, 1018, 1229
Bsp1720I	GCTNAGC	1 cut(s)	44
Bsp19I	CCATGG	1 cut(s)	1815
Bsp68I	TCGCGA	1 cut(s)	150
BspANI	GGCC	7 cut(s)	278, 626, 710, 931, 1526, 1947, 1975
BspCNI	CTCAG	4 cut(s)	57, 424, 1381, 1459
BspFNI	CGCG	4 cut(s)	126, 150, 163, 512
BspHI	TCATGA	3 cut(s)	970, 1111, 1168
BspLI	GGNNCC	4 cut(s)	72, 122, 1231, 1877
BspMAI	CTGCAG	2 cut(s)	1470, 1684
BspMI	ACCTGC	2 cut(s)	201, 1086
BspPI	GGATC	5 cut(s)	59, 672, 1026, 1224, 1237
BspQI	GCTCTTC	1 cut(s)	597
BspT104I	TTCGAA	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	70
BspTI	CTTAAG	3 cut(s)	1730, 1846, 1936
BspTNI	GGTCTC	1 cut(s)	325
BsrBI	CCGCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	1623
BsrFI	RCCGGY	3 cut(s)	117, 556, 975
BsrI	ACTGG	1 cut(s)	202
BssAI	RCCGGY	3 cut(s)	117, 556, 975
BssECI	CCNNGG	4 cut(s)	527, 1815, 1948, 1976
BssMI	GATC	7 cut(s)	64, 75, 145, 664, 943, 1018, 1229
BssNAI	GTATAC	1 cut(s)	1405
BssNI	GRCGYC	3 cut(s)	30, 402, 749
BssSI	CACGAG	1 cut(s)	230
BssT1I	CCWWGG	1 cut(s)	1815
Bst1107I	GTATAC	1 cut(s)	1405
Bst2BI	CACGAG	1 cut(s)	230
Bst2UI	CCWGG	3 cut(s)	1873, 1949, 1978
Bst4CI	ACNGT	2 cut(s)	300, 1719
Bst6I	CTCTTC	6 cut(s)	597, 726, 1569, 1740, 1791, 2073
BstACI	GRCGYC	3 cut(s)	30, 402, 749
BstAFI	CTTAAG	3 cut(s)	1730, 1846, 1936
BstAPI	GCANNNNNTGC	1 cut(s)	1811
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	8 cut(s)	128, 152, 159, 558, 1083, 1687, 1758, 2058
BstDEI	CTNAG	8 cut(s)	44, 432, 1238, 1281, 1389, 1446, 1487, 1533
BstDSI	CCRYGG	1 cut(s)	1815
BstENI	CCTNNNNNAGG	1 cut(s)	1237
BstF5I	GGATG	7 cut(s)	382, 424, 1104, 1192, 1266, 1381, 1868
BstFNI	CGCG	4 cut(s)	126, 150, 163, 512
BstH2I	RGCGCY	1 cut(s)	1248
BstHHI	GCGC	3 cut(s)	163, 229, 1247
BstKTI	GATC	7 cut(s)	67, 78, 148, 667, 946, 1021, 1232
BstMAI	GTCTC	6 cut(s)	243, 264, 325, 348, 1579, 1793
BstMBI	GATC	7 cut(s)	64, 75, 145, 664, 943, 1018, 1229
BstMCI	CGRYCG	2 cut(s)	78, 118
BstNI	CCWGG	3 cut(s)	1873, 1949, 1978
BstNSI	RCATGY	1 cut(s)	1520
BstSCI	CCNGG	3 cut(s)	1871, 1947, 1976
BstSFI	CTRYAG	2 cut(s)	1466, 1680
BstUI	CGCG	4 cut(s)	126, 150, 163, 512
BstV2I	GAAGAC	2 cut(s)	33, 752
BstX2I	RGATCY	1 cut(s)	1229
BstXI	CCANNNNNNTGG	1 cut(s)	1015
BstYI	RGATCY	1 cut(s)	1229
BstZ17I	GTATAC	1 cut(s)	1405
BsuRI	GGCC	7 cut(s)	278, 626, 710, 931, 1526, 1947, 1975
BtgI	CCRYGG	1 cut(s)	1815
BtsCI	GGATG	7 cut(s)	382, 424, 1104, 1192, 1266, 1381, 1868
BtsI	GCAGTG	2 cut(s)	627, 1988
BtsIMutI	CAGTG	2 cut(s)	627, 1988
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	2 cut(s)	201, 1086
Cac8I	GCNNGC	8 cut(s)	128, 152, 159, 558, 1083, 1687, 1758, 2058
CaiI	CAGNNNCTG	1 cut(s)	1811
CciI	TCATGA	3 cut(s)	970, 1111, 1168
CfoI	GCGC	3 cut(s)	163, 229, 1247
Cfr10I	RCCGGY	3 cut(s)	117, 556, 975
Cfr13I	GGNCC	4 cut(s)	190, 1525, 1955, 1974
CseI	GACGC	1 cut(s)	38
Csp6I	GTAC	1 cut(s)	541
CspAI	ACCGGT	1 cut(s)	117
CviAII	CATG	8 cut(s)	460, 971, 986, 1066, 1112, 1169, 1517, 1816
CviQI	GTAC	1 cut(s)	541
DdeI	CTNAG	8 cut(s)	44, 432, 1238, 1281, 1389, 1446, 1487, 1533
DpnI	GATC	7 cut(s)	66, 77, 147, 666, 945, 1020, 1231
DpnII	GATC	7 cut(s)	64, 75, 145, 664, 943, 1018, 1229
DraI	TTTAAA	1 cut(s)	1342
DrdI	GACNNNNNNGTC	1 cut(s)	197
DseDI	GACNNNNNNGTC	1 cut(s)	197
Eam1104I	CTCTTC	6 cut(s)	597, 726, 1569, 1740, 1791, 2073
EarI	CTCTTC	6 cut(s)	597, 726, 1569, 1740, 1791, 2073
EciI	GGCGGA	3 cut(s)	100, 341, 857
Ecl136II	GAGCTC	2 cut(s)	130, 1540
Eco130I	CCWWGG	1 cut(s)	1815
Eco147I	AGGCCT	3 cut(s)	278, 931, 1947
Eco24I	GRGCYC	2 cut(s)	132, 1542
Eco31I	GGTCTC	1 cut(s)	325
Eco47I	GGWCC	2 cut(s)	190, 1955
Eco47III	AGCGCT	1 cut(s)	1246
Eco53kI	GAGCTC	2 cut(s)	130, 1540
Eco57I	CTGAAG	1 cut(s)	1656
Eco88I	CYCGRG	1 cut(s)	1861
EcoICRI	GAGCTC	2 cut(s)	130, 1540
EcoNI	CCTNNNNNAGG	1 cut(s)	1237
EcoRI	GAATTC	3 cut(s)	88, 178, 442
EcoRII	CCWGG	3 cut(s)	1871, 1947, 1976
EcoT14I	CCWWGG	1 cut(s)	1815
EcoT22I	ATGCAT	1 cut(s)	1557
EcoT38I	GRGCYC	2 cut(s)	132, 1542
ErhI	CCWWGG	1 cut(s)	1815
Esp3I	CGTCTC	3 cut(s)	243, 264, 348
FaeI	CATG	8 cut(s)	463, 974, 989, 1069, 1115, 1172, 1520, 1819
FatI	CATG	8 cut(s)	459, 970, 985, 1065, 1111, 1168, 1516, 1815
FauI	CCCGC	2 cut(s)	156, 508
FauNDI	CATATG	2 cut(s)	453, 1356
FbaI	TGATCA	1 cut(s)	943
FblI	GTMKAC	1 cut(s)	1404
FokI	GGATG	7 cut(s)	389, 431, 1111, 1199, 1273, 1388, 1855
FriOI	GRGCYC	2 cut(s)	132, 1542
FspBI	CTAG	7 cut(s)	143, 639, 651, 876, 1589, 1824, 1959
GlaI	GCGC	3 cut(s)	162, 228, 1246
GsaI	CCCAGC	2 cut(s)	1098, 1332
GsuI	CTGGAG	2 cut(s)	725, 1472
HaeII	RGCGCY	1 cut(s)	1248
HaeIII	GGCC	7 cut(s)	278, 626, 710, 931, 1526, 1947, 1975
HapII	CCGG	6 cut(s)	68, 98, 118, 549, 557, 976
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	3 cut(s)	163, 229, 1247
Hin1I	GRCGYC	3 cut(s)	30, 402, 749
Hin1II	CATG	8 cut(s)	463, 974, 989, 1069, 1115, 1172, 1520, 1819
Hin6I	GCGC	3 cut(s)	161, 227, 1245
HinP1I	GCGC	3 cut(s)	161, 227, 1245
HincII	GTYRAC	2 cut(s)	897, 1907
HindII	GTYRAC	2 cut(s)	897, 1907
HinfI	GANTC	8 cut(s)	908, 1037, 1103, 1165, 1198, 1363, 1769, 1859
HpaII	CCGG	6 cut(s)	68, 98, 118, 549, 557, 976
Hpy166II	GTNNAC	6 cut(s)	543, 897, 1405, 1505, 1907, 1955
Hpy8I	GTNNAC	6 cut(s)	543, 897, 1405, 1505, 1907, 1955
Hpy99I	CGWCG	6 cut(s)	26, 53, 65, 97, 404, 407
HpyAV	CCTTC	6 cut(s)	283, 310, 409, 831, 1573, 1601
HpyCH4III	ACNGT	2 cut(s)	300, 1719
HpyCH4IV	ACGT	3 cut(s)	51, 402, 749
HpyCH4V	TGCA	9 cut(s)	196, 367, 782, 1085, 1307, 1379, 1468, 1555, 1682
HpyF3I	CTNAG	8 cut(s)	44, 432, 1238, 1281, 1389, 1446, 1487, 1533
HpySE526I	ACGT	3 cut(s)	51, 402, 749
Hsp92I	GRCGYC	3 cut(s)	30, 402, 749
Hsp92II	CATG	8 cut(s)	463, 974, 989, 1069, 1115, 1172, 1520, 1819
HspAI	GCGC	3 cut(s)	161, 227, 1245
KroI	GCCGGC	1 cut(s)	556
KroNI	GCCGGC	1 cut(s)	558
Ksp22I	TGATCA	1 cut(s)	943
Kzo9I	GATC	7 cut(s)	64, 75, 145, 664, 943, 1018, 1229
LguI	GCTCTTC	1 cut(s)	597
LmnI	GCTCC	7 cut(s)	135, 655, 1242, 1537, 1881, 1894, 2053
LweI	GCATC	8 cut(s)	25, 994, 1094, 1366, 1451, 1798, 1819, 1877
MaeI	CTAG	7 cut(s)	143, 639, 651, 876, 1589, 1824, 1959
MaeII	ACGT	3 cut(s)	51, 402, 749
MalI	GATC	7 cut(s)	66, 77, 147, 666, 945, 1020, 1231
MbiI	CCGCTC	1 cut(s)	154
MboI	GATC	7 cut(s)	64, 75, 145, 664, 943, 1018, 1229
MfeI	CAATTG	1 cut(s)	1761
MflI	RGATCY	1 cut(s)	1229
MhlI	GDGCHC	3 cut(s)	45, 132, 1542
MlyI	GAGTC	4 cut(s)	902, 1192, 1778, 1853
MmeI	TCCRAC	1 cut(s)	783
Mph1103I	ATGCAT	1 cut(s)	1557
MroNI	GCCGGC	1 cut(s)	556
MroXI	GAANNNNTTC	3 cut(s)	1107, 1296, 2067
MslI	CAYNNNNRTG	2 cut(s)	375, 452
MspA1I	CMGCKG	2 cut(s)	703, 1450
MspCI	CTTAAG	3 cut(s)	1730, 1846, 1936
MspI	CCGG	6 cut(s)	68, 98, 118, 549, 557, 976
MspR9I	CCNGG	3 cut(s)	1873, 1949, 1978
MunI	CAATTG	1 cut(s)	1761
Mva1269I	GAATGC	2 cut(s)	1471, 1557
MvaI	CCWGG	3 cut(s)	1873, 1949, 1978
MvnI	CGCG	4 cut(s)	126, 150, 163, 512
NaeI	GCCGGC	1 cut(s)	558
NcoI	CCATGG	1 cut(s)	1815
NdeI	CATATG	2 cut(s)	453, 1356
NdeII	GATC	7 cut(s)	64, 75, 145, 664, 943, 1018, 1229
NgoMIV	GCCGGC	1 cut(s)	556
NlaIII	CATG	8 cut(s)	463, 974, 989, 1069, 1115, 1172, 1520, 1819
NlaIV	GGNNCC	4 cut(s)	72, 122, 1231, 1877
NmeAIII	GCCGAG	3 cut(s)	163, 302, 552
NruI	TCGCGA	1 cut(s)	150
NsiI	ATGCAT	1 cut(s)	1557
NspI	RCATGY	1 cut(s)	1520
NspV	TTCGAA	1 cut(s)	182
PaeR7I	CTCGAG	1 cut(s)	1861
PagI	TCATGA	3 cut(s)	970, 1111, 1168
PceI	AGGCCT	3 cut(s)	278, 931, 1947
PciSI	GCTCTTC	1 cut(s)	597
PcsI	WCGNNNNNNNCGW	2 cut(s)	30, 57
PctI	GAATGC	2 cut(s)	1471, 1557
PdiI	GCCGGC	1 cut(s)	558
PdmI	GAANNNNTTC	3 cut(s)	1107, 1296, 2067
PfeI	GAWTC	4 cut(s)	1037, 1103, 1165, 1363
PflFI	GACNNNGTC	1 cut(s)	401
PinAI	ACCGGT	1 cut(s)	117
Ple19I	CGATCG	1 cut(s)	78
PleI	GAGTC	4 cut(s)	902, 1192, 1777, 1853
PpsI	GAGTC	4 cut(s)	902, 1192, 1777, 1853
PsiI	TTATAA	1 cut(s)	578
Psp124BI	GAGCTC	2 cut(s)	132, 1542
Psp6I	CCWGG	3 cut(s)	1871, 1947, 1976
PspFI	CCCAGC	2 cut(s)	1094, 1328
PspGI	CCWGG	3 cut(s)	1871, 1947, 1976
PspN4I	GGNNCC	4 cut(s)	72, 122, 1231, 1877
PspPI	GGNCC	4 cut(s)	190, 1525, 1955, 1974
PspXI	VCTCGAGB	1 cut(s)	1861
PstI	CTGCAG	2 cut(s)	1470, 1684
PstNI	CAGNNNCTG	1 cut(s)	1811
PsuI	RGATCY	1 cut(s)	1229
PsyI	GACNNNGTC	1 cut(s)	401
PvuI	CGATCG	1 cut(s)	78
PvuII	CAGCTG	2 cut(s)	703, 1450
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	1 cut(s)	542
RsaNI	GTAC	1 cut(s)	541
RseI	CAYNNNNRTG	2 cut(s)	375, 452
SacI	GAGCTC	2 cut(s)	132, 1542
SapI	GCTCTTC	1 cut(s)	597
Sau3AI	GATC	7 cut(s)	64, 75, 145, 664, 943, 1018, 1229
Sau96I	GGNCC	4 cut(s)	190, 1525, 1955, 1974
SchI	GAGTC	4 cut(s)	902, 1192, 1778, 1853
ScrFI	CCNGG	3 cut(s)	1873, 1949, 1978
SduI	GDGCHC	3 cut(s)	45, 132, 1542
SfaNI	GCATC	8 cut(s)	25, 994, 1094, 1366, 1451, 1798, 1819, 1877
SfcI	CTRYAG	2 cut(s)	1466, 1680
Sfr274I	CTCGAG	1 cut(s)	1861
SfuI	TTCGAA	1 cut(s)	182
SinI	GGWCC	2 cut(s)	190, 1955
SlaI	CTCGAG	1 cut(s)	1861
SmiMI	CAYNNNNRTG	2 cut(s)	375, 452
SmlI	CTYRAG	7 cut(s)	1053, 1382, 1730, 1784, 1846, 1861, 1936
SmoI	CTYRAG	7 cut(s)	1053, 1382, 1730, 1784, 1846, 1861, 1936
SseBI	AGGCCT	3 cut(s)	278, 931, 1947
SspI	AATATT	1 cut(s)	1432
SspMI	CTAG	7 cut(s)	143, 639, 651, 876, 1589, 1824, 1959
SstI	GAGCTC	2 cut(s)	132, 1542
StuI	AGGCCT	3 cut(s)	278, 931, 1947
StyD4I	CCNGG	3 cut(s)	1871, 1947, 1976
StyI	CCWWGG	1 cut(s)	1815
TaaI	ACNGT	2 cut(s)	300, 1719
TaiI	ACGT	3 cut(s)	54, 405, 752
TaqI	TCGA	6 cut(s)	182, 533, 911, 962, 1542, 1862
TatI	WGTACW	1 cut(s)	540
TauI	GCSGC	3 cut(s)	21, 157, 515
TfiI	GAWTC	4 cut(s)	1037, 1103, 1165, 1363
TscAI	CASTG	2 cut(s)	634, 1988
TspDTI	ATGAA	9 cut(s)	959, 1007, 1100, 1128, 1185, 1203, 1413, 1611, 2061
TspRI	CASTG	2 cut(s)	634, 1988
Tth111I	GACNNNGTC	1 cut(s)	401
Vha464I	CTTAAG	3 cut(s)	1730, 1846, 1936
VpaK11BI	GGWCC	2 cut(s)	190, 1955
XagI	CCTNNNNNAGG	1 cut(s)	1237
XapI	RAATTY	9 cut(s)	88, 178, 442, 505, 901, 952, 966, 1343, 1916
XceI	RCATGY	1 cut(s)	1520
XhoI	CTCGAG	1 cut(s)	1861
XmiI	GTMKAC	1 cut(s)	1404
XmnI	GAANNNNTTC	3 cut(s)	1107, 1296, 2067
XspI	CTAG	7 cut(s)	143, 639, 651, 876, 1589, 1824, 1959
ZraI	GACGTC	2 cut(s)	403, 750
Zsp2I	ATGCAT	1 cut(s)	1557

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.