Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003156

Physical Location & Seq

Genomic Coordinates Forward (+)

23949900 .. 23951509

Gene Structure 1610 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG231900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGATAGAATGCATAGAAAAAAGGTTGCCGAGGTTGAAAAGCTTACAGACTGTGCGGGAGTTGGAAGAGGCAGTTCTTGCTGGTGGTGCTGCAGCCAATGCTATTAGGGATTACCAGCGGAAGTTCCAGGAGATGAATGAGGAGAGGAAAACTCTAGACCGGGAGTTGGCCCGTGCAAAAGTCACAGCAAACAGAGTAGCCGTAGTGGTAGCAAATGAGTGGAAAGACGCTAACGACAAAGTGATGCCTGTAAAGCAATGGCTTGAAGAATGGAGATTCTTGCAGGGAGAAATGCAGCAACTTCGGGACAAGATTGCTATAACTGAAAGAGCTGCCAAGTCAGAAGCTCAGTTGAAAGAAAAATATCATATGCGACTTAAAGTGCTTGAGGAGAGTGTGAGAGGATCTTCGAACAGTATTGTCGAAGCACAGCAGAAGGAAGAAGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010005 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0055028 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

149

Amino Acids

17.32

Weight (kDa)

8.66

Isoelectric Point (pI)

44.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP70	PF07058	15 - 144	1.6e-74	Microtubule-associated protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14840 AT1G14840 AT1G24764 AT1G24764 AT1G24764 AT1G68060 AT2G01750 AT2G01750
fragaria_vesca	FvH4_4g33511 FvH4_4g33511 FvH4_4g33511
malus_domestica	MD00G1075100.v1.1 MD12G1095700.v1.1 MD13G1020100.v1.1 MD16G1018200.v1.1
prunus_persica	Prupe.1G333700_v2.0.a1 Prupe.7G032400_v2.0.a1 Prupe.7G032700_v2.0.a1
pyrus_communis	pycom12g08260 pycom13g01700 pycom14g08120 pycom16g01650
rosa_chinensis	RchiOBHm_Chr3g0480111 RchiOBHm_Chr4g0443021
rosa_laevigata	RLG00000005962
rosa_multiflora	Rmu_sc0006604.1_g000002 Rmu_ssc0000204.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383650
rosa_rugosa	Rorug04G0343800 Rorug04G0343800
rosa_samantha	Rh3AG231900 Rh3AG232000 Rh4AG398000 Rh4BG409500 Rh4CG425000 Rh4DG404300
rosa_wichuraiana	Rw4G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	55, 118
AclWI	GGATC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	166
AgsI	TTSAA	3 cut(s)	37, 266, 355
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	42, 332, 347
AluI	AGCT	3 cut(s)	42, 332, 347
AlwI	GGATC	1 cut(s)	412
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	4 cut(s)	89, 92, 295, 332
AspS9I	GGNCC	1 cut(s)	169
AsuC2I	CCSGG	1 cut(s)	161
AsuII	TTCGAA	1 cut(s)	410
BbvI	GCAGC	4 cut(s)	76, 104, 307, 319
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	284, 318
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	161
BfaI	CTAG	1 cut(s)	155
BfmI	CTRYAG	1 cut(s)	90
BisI	GCNGC	4 cut(s)	90, 93, 296, 333
BlsI	GCNGC	4 cut(s)	91, 94, 297, 334
Bme1390I	CCNGG	2 cut(s)	128, 161
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	2 cut(s)	128, 161
BmsI	GCATC	1 cut(s)	234
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
Bpu14I	TTCGAA	1 cut(s)	410
BpuEI	CTTGAG	1 cut(s)	407
BpuMI	CCSGG	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	263
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMI	GCAATG	1 cut(s)	263
BseMII	CTCAG	1 cut(s)	362
BseRI	GAGGAG	2 cut(s)	155, 404
BseXI	GCAGC	4 cut(s)	76, 104, 307, 319
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	160
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmFI	GGGAC	1 cut(s)	320
BsmI	GAATGC	1 cut(s)	14
BsnI	GGCC	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	410
Bsp143I	GATC	1 cut(s)	404
BspACI	CCGC	2 cut(s)	55, 118
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	361
BspMAI	CTGCAG	1 cut(s)	94
BspPI	GGATC	1 cut(s)	412
BspT104I	TTCGAA	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	263
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	1 cut(s)	404
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	2 cut(s)	52, 416
Bst6I	CTCTTC	1 cut(s)	60
BstAPI	GCANNNNNTGC	2 cut(s)	77, 98
BstBI	TTCGAA	1 cut(s)	410
BstDEI	CTNAG	1 cut(s)	348
BstKTI	GATC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	404
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 86, 98, 253
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	126, 159
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	4 cut(s)	76, 104, 307, 319
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	170
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	1 cut(s)	236
CviJI	RGCY	7 cut(s)	42, 95, 170, 200, 262, 332, 347
CviKI_1	RGCY	7 cut(s)	42, 95, 170, 200, 262, 332, 347
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	1 cut(s)	406
DpnII	GATC	1 cut(s)	404
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	126
EcoT22I	ATGCAT	1 cut(s)	14
FaiI	YATR	5 cut(s)	14, 320, 369, 371, 448
FaqI	GGGAC	1 cut(s)	320
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	369
Fnu4HI	GCNGC	4 cut(s)	90, 93, 296, 333
Fsp4HI	GCNGC	4 cut(s)	90, 93, 296, 333
FspBI	CTAG	1 cut(s)	155
GluI	GCNGC	4 cut(s)	90, 93, 296, 333
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	160
HgaI	GACGC	1 cut(s)	236
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	1 cut(s)	276
HpaII	CCGG	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	343
Hpy188III	TCNNGA	2 cut(s)	155, 305
HpyAV	CCTTC	1 cut(s)	430
HpyCH4III	ACNGT	2 cut(s)	52, 416
HpyCH4V	TGCA	5 cut(s)	12, 92, 176, 283, 295
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 86, 98, 253
HpyF3I	CTNAG	1 cut(s)	348
Kzo9I	GATC	1 cut(s)	404
LpnPI	CCDG	7 cut(s)	66, 113, 128, 140, 173, 261, 269
Lsp1109I	GCAGC	4 cut(s)	76, 104, 307, 319
LweI	GCATC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	155
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	1 cut(s)	406
MboI	GATC	1 cut(s)	404
MboII	GAAGA	3 cut(s)	77, 278, 399
MflI	RGATCY	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	6 cut(s)	24, 61, 133, 138, 382, 395
Mph1103I	ATGCAT	1 cut(s)	14
MseI	TTAA	1 cut(s)	378
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	2 cut(s)	128, 161
Mva1269I	GAATGC	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	4 cut(s)	77, 86, 98, 253
NciI	CCSGG	1 cut(s)	161
NdeI	CATATG	1 cut(s)	369
NdeII	GATC	1 cut(s)	404
NmeAIII	GCCGAG	1 cut(s)	54
NmuCI	GTSAC	1 cut(s)	181
NsiI	ATGCAT	1 cut(s)	14
NspV	TTCGAA	1 cut(s)	410
PctI	GAATGC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	276
PfoI	TCCNGGA	1 cut(s)	126
PkrI	GCNGC	4 cut(s)	91, 94, 297, 334
Psp6I	CCWGG	1 cut(s)	126
PspGI	CCWGG	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	404
SaqAI	TTAA	1 cut(s)	378
SatI	GCNGC	4 cut(s)	90, 93, 296, 333
Sau3AI	GATC	1 cut(s)	404
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	2 cut(s)	128, 161
SetI	ASST	5 cut(s)	26, 35, 44, 334, 349
SfaNI	GCATC	1 cut(s)	234
SfcI	CTRYAG	1 cut(s)	90
SfuI	TTCGAA	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	386
SmoI	CTYRAG	1 cut(s)	386
SsiI	CCGC	2 cut(s)	55, 118
SspMI	CTAG	1 cut(s)	155
StyD4I	CCNGG	2 cut(s)	126, 159
TaaI	ACNGT	2 cut(s)	52, 416
TaqI	TCGA	2 cut(s)	410, 423
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	378
Tru9I	TTAA	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	181
TseI	GCWGC	4 cut(s)	89, 92, 295, 332
Tsp45I	GTSAC	1 cut(s)	181
TspDTI	ATGAA	1 cut(s)	149
XbaI	TCTAGA	1 cut(s)	154
XspI	CTAG	1 cut(s)	155
Zsp2I	ATGCAT	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.