Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003156

Physical Location & Seq

Genomic Coordinates Forward (+)

23951640 .. 23953970

Gene Structure 2331 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG232000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGATCACAGGAATCTGTAAACCAGCTGTAGACAAATCATTCAATGGAGGAGATTCTGGGATTGATTGGTGGAGGAGATGGATTGTCTCTAACAGCTCTCGACGTCAGTCTCTTGGTGGAGCGGATAACGCTCCTAAATTATCTTCCAATGGCTTTTTATCCAAGAGAACACCAGTCAGATCCTTGTCCTCCGGCACTAGTTCAGTCTTGAAGCATGCGAAAGGCACTTCAAAATCATTTGATGGCGGTACTAGATCACTGGACAGGGGTAAGGTTCTGTTAAATGGTGCAAGCTCCAATTTCTCAGTCAACCAATCTTGTGAGGGAACCAAAGATGGGGAAGCACAAAATAACTGGAAAGGGAATTCTGATGATAAGCCAAATGAGTTCTCAACAGTGGATACAGAGGATAATGTCCCAGGGGTTTTGTATGATCTGCTACAGAAAGAGGTTGTAGCTTTGAGGAAAGCTGGCCATGAGAAAGATCAAAGCCTCAAAGACAAAGATGACGCTATTGAGATGTTAGCCAAGAAGGTAGACACCTTGGCTAAAGCAATGGAGGTTGAGGCAAGGAAAATGAGAAGAGAAGTTACTGCTATGGAGAAGGAGGTAGCTGCCATGCGTGTGGACAAAGAACACGACAATAGGGCCAAGCAGTTTGGTAGTGCCAAAACCTCTGTCAACAGTGCTCAAGTGCTTTCTGGAAGAGGTCTGTCACGAGGAGGGTTGACACGCAGCACCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010005 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0055028 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

248

Amino Acids

26.89

Weight (kDa)

9.54

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP70	PF07058	28 - 232	1.5e-78	Microtubule-associated protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14840 AT1G14840 AT1G24764 AT1G24764 AT1G24764 AT1G68060 AT2G01750 AT2G01750
fragaria_vesca	FvH4_4g33511 FvH4_4g33511 FvH4_4g33511
malus_domestica	MD00G1075100.v1.1 MD12G1095700.v1.1 MD13G1020100.v1.1 MD16G1018200.v1.1
prunus_persica	Prupe.1G333700_v2.0.a1 Prupe.7G032400_v2.0.a1 Prupe.7G032700_v2.0.a1
pyrus_communis	pycom12g08260 pycom13g01700 pycom14g08120 pycom16g01650
rosa_chinensis	RchiOBHm_Chr3g0480111 RchiOBHm_Chr4g0443021
rosa_laevigata	RLG00000005962
rosa_multiflora	Rmu_sc0006604.1_g000002 Rmu_ssc0000204.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383650
rosa_rugosa	Rorug04G0343800 Rorug04G0343800
rosa_samantha	Rh3AG231900 Rh3AG232000 Rh4AG398000 Rh4BG409500 Rh4CG425000 Rh4DG404300
rosa_wichuraiana	Rw4G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	122
AccI	GTMKAC	2 cut(s)	30, 537
AciI	CCGC	2 cut(s)	122, 246
AclWI	GGATC	1 cut(s)	174
AcoI	YGGCCR	1 cut(s)	472
AcsI	RAATTY	1 cut(s)	364
AcyI	GRCGYC	1 cut(s)	103
AfaI	GTAC	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	336
AgsI	TTSAA	3 cut(s)	43, 211, 231
AhlI	ACTAGT	1 cut(s)	197
AjnI	CCWGG	1 cut(s)	418
AluBI	AGCT	6 cut(s)	26, 96, 294, 458, 470, 614
AluI	AGCT	6 cut(s)	26, 96, 294, 458, 470, 614
Alw21I	GWGCWC	1 cut(s)	691
Alw26I	GTCTC	2 cut(s)	91, 114
AlwI	GGATC	1 cut(s)	174
AoxI	GGCC	2 cut(s)	472, 648
ApeKI	GCWGC	2 cut(s)	614, 735
ApoI	RAATTY	1 cut(s)	364
ArsI	GACNNNNNNTTYG	2 cut(s)	663, 695
AspS9I	GGNCC	1 cut(s)	648
BalI	TGGCCA	1 cut(s)	474
BarI	GAAGNNNNNNTAC	2 cut(s)	574, 606
BauI	CACGAG	1 cut(s)	717
Bbv12I	GWGCWC	1 cut(s)	691
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	3 cut(s)	72, 236, 329
BciT130I	CCWGG	1 cut(s)	420
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	2 cut(s)	91, 114
BcuI	ACTAGT	1 cut(s)	197
BfaI	CTAG	2 cut(s)	198, 252
BfmI	CTRYAG	2 cut(s)	27, 440
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	2 cut(s)	615, 736
BlsI	GCNGC	2 cut(s)	616, 737
Bme1390I	CCNGG	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	648
BmiI	GGNNCC	1 cut(s)	328
BmrFI	CCNGG	1 cut(s)	420
BoxI	GACNNNNGTC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	675
BsaHI	GRCGYC	1 cut(s)	103
BsaJI	CCNNGG	3 cut(s)	418, 419, 543
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse1I	ACTGG	3 cut(s)	173, 264, 359
Bse3DI	GCAATG	1 cut(s)	561
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	3 cut(s)	418, 419, 543
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	561
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	3 cut(s)	173, 264, 359
BseRI	GAGGAG	3 cut(s)	63, 88, 735
BseXI	GCAGC	1 cut(s)	601
BshFI	GGCC	2 cut(s)	474, 650
BsiHKAI	GWGCWC	1 cut(s)	691
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	401
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	91, 114
BsmFI	GGGAC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	474, 650
Bsp1286I	GDGCHC	1 cut(s)	691
Bsp143I	GATC	5 cut(s)	3, 179, 254, 433, 484
BspACI	CCGC	2 cut(s)	122, 246
BspANI	GGCC	2 cut(s)	474, 650
BspCNI	CTCAG	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	328
BspPI	GGATC	1 cut(s)	174
BsrBI	CCGCTC	1 cut(s)	122
BsrDI	GCAATG	1 cut(s)	561
BsrI	ACTGG	3 cut(s)	173, 264, 359
BssECI	CCNNGG	3 cut(s)	418, 419, 543
BssMI	GATC	5 cut(s)	3, 179, 254, 433, 484
BssNI	GRCGYC	1 cut(s)	103
BssSI	CACGAG	1 cut(s)	717
BssT1I	CCWWGG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	717
Bst2UI	CCWGG	1 cut(s)	420
Bst4CI	ACNGT	2 cut(s)	397, 686
Bst6I	CTCTTC	2 cut(s)	577, 700
BstACI	GRCGYC	1 cut(s)	103
BstC8I	GCNNGC	3 cut(s)	216, 292, 472
BstDEI	CTNAG	1 cut(s)	304
BstKTI	GATC	5 cut(s)	6, 182, 257, 436, 487
BstMAI	GTCTC	2 cut(s)	91, 114
BstMBI	GATC	5 cut(s)	3, 179, 254, 433, 484
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	218
BstPAI	GACNNNNGTC	1 cut(s)	106
BstSCI	CCNGG	1 cut(s)	418
BstSFI	CTRYAG	2 cut(s)	27, 440
BstV1I	GCAGC	1 cut(s)	601
BstX2I	RGATCY	1 cut(s)	179
BstXI	CCANNNNNNTGG	1 cut(s)	625
BstYI	RGATCY	1 cut(s)	179
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	2 cut(s)	474, 650
BtsIMutI	CAGTG	3 cut(s)	257, 402, 691
Cac8I	GCNNGC	3 cut(s)	216, 292, 472
Cfr13I	GGNCC	1 cut(s)	648
CseI	GACGC	1 cut(s)	518
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	3 cut(s)	215, 476, 619
CviQI	GTAC	1 cut(s)	249
DdeI	CTNAG	1 cut(s)	304
DpnI	GATC	5 cut(s)	5, 181, 256, 435, 486
DpnII	GATC	5 cut(s)	3, 179, 254, 433, 484
EaeI	YGGCCR	1 cut(s)	472
Eam1104I	CTCTTC	2 cut(s)	577, 700
EarI	CTCTTC	2 cut(s)	577, 700
Eco130I	CCWWGG	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	543
ErhI	CCWWGG	1 cut(s)	543
FaeI	CATG	3 cut(s)	218, 479, 622
FaiI	YATR	5 cut(s)	216, 432, 477, 599, 620
FaqI	GGGAC	1 cut(s)	401
FatI	CATG	3 cut(s)	214, 475, 618
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	2 cut(s)	30, 537
Fnu4HI	GCNGC	2 cut(s)	615, 736
Fsp4HI	GCNGC	2 cut(s)	615, 736
FspBI	CTAG	2 cut(s)	198, 252
GluI	GCNGC	2 cut(s)	615, 736
HaeIII	GGCC	2 cut(s)	474, 650
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	518
Hin1I	GRCGYC	1 cut(s)	103
Hin1II	CATG	3 cut(s)	218, 479, 622
HincII	GTYRAC	3 cut(s)	310, 682, 729
HindII	GTYRAC	3 cut(s)	310, 682, 729
HinfI	GANTC	2 cut(s)	12, 53
HpaII	CCGG	1 cut(s)	192
Hpy166II	GTNNAC	7 cut(s)	20, 31, 310, 538, 628, 682, 729
Hpy188I	TCNGA	2 cut(s)	179, 370
Hpy188III	TCNNGA	4 cut(s)	99, 208, 702, 717
Hpy8I	GTNNAC	7 cut(s)	20, 31, 310, 538, 628, 682, 729
Hpy99I	CGWCG	1 cut(s)	105
HpyAV	CCTTC	2 cut(s)	526, 598
HpyCH4III	ACNGT	2 cut(s)	397, 686
HpyCH4IV	ACGT	1 cut(s)	103
HpyCH4V	TGCA	1 cut(s)	290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	304
HpySE526I	ACGT	1 cut(s)	103
Hsp92I	GRCGYC	1 cut(s)	103
Hsp92II	CATG	3 cut(s)	218, 479, 622
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	5 cut(s)	3, 179, 254, 433, 484
LmnI	GCTCC	3 cut(s)	119, 136, 299
Lsp1109I	GCAGC	1 cut(s)	601
MaeI	CTAG	2 cut(s)	198, 252
MaeII	ACGT	1 cut(s)	103
MaeIII	GTNAC	2 cut(s)	589, 714
MalI	GATC	5 cut(s)	5, 181, 256, 435, 486
MbiI	CCGCTC	1 cut(s)	122
MboI	GATC	5 cut(s)	3, 179, 254, 433, 484
MboII	GAAGA	3 cut(s)	135, 594, 717
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	691
MlsI	TGGCCA	1 cut(s)	474
MluCI	AATT	3 cut(s)	137, 298, 364
MluNI	TGGCCA	1 cut(s)	474
Mox20I	TGGCCA	1 cut(s)	474
MscI	TGGCCA	1 cut(s)	474
MseI	TTAA	1 cut(s)	281
MslI	CAYNNNNRTG	1 cut(s)	623
Msp20I	TGGCCA	1 cut(s)	474
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	420
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	5 cut(s)	3, 179, 254, 433, 484
NlaIII	CATG	3 cut(s)	218, 479, 622
NlaIV	GGNNCC	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	714
NspI	RCATGY	1 cut(s)	218
PaeI	GCATGC	1 cut(s)	218
PasI	CCCWGGG	1 cut(s)	419
PfeI	GAWTC	2 cut(s)	12, 53
PkrI	GCNGC	2 cut(s)	616, 737
PshAI	GACNNNNGTC	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	1 cut(s)	328
PspPI	GGNCC	1 cut(s)	648
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
RseI	CAYNNNNRTG	1 cut(s)	623
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	615, 736
Sau3AI	GATC	5 cut(s)	3, 179, 254, 433, 484
Sau96I	GGNCC	1 cut(s)	648
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	691
SfcI	CTRYAG	2 cut(s)	27, 440
SmiMI	CAYNNNNRTG	1 cut(s)	623
SmlI	CTYRAG	1 cut(s)	690
SmoI	CTYRAG	1 cut(s)	690
SpeI	ACTAGT	1 cut(s)	197
SphI	GCATGC	1 cut(s)	218
Sse9I	AATT	3 cut(s)	137, 298, 364
SsiI	CCGC	2 cut(s)	122, 246
SspMI	CTAG	2 cut(s)	198, 252
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	543
TaaI	ACNGT	2 cut(s)	397, 686
TaiI	ACGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	100
TasI	AATT	3 cut(s)	137, 298, 364
TfiI	GAWTC	2 cut(s)	12, 53
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TscAI	CASTG	3 cut(s)	264, 402, 691
TseFI	GTSAC	1 cut(s)	714
TseI	GCWGC	2 cut(s)	614, 735
Tsp45I	GTSAC	1 cut(s)	714
TspRI	CASTG	3 cut(s)	264, 402, 691
XapI	RAATTY	1 cut(s)	364
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	2 cut(s)	30, 537
XspI	CTAG	2 cut(s)	198, 252
ZraI	GACGTC	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.