Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003156

Physical Location & Seq

Genomic Coordinates Forward (+)

25903305 .. 25905193

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ44514

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGTTTTGGCGGTTGCCGAGGTTGAAAAGCTTACAGACTGTGCGGGAGTTGGAAGAGGCAGTTCTTGCTGGTGGTGCTGCAGCCAATGCTATTAGGGATTACCAGCGGAAGTTCCAGGAGATGAATGAGGAGAGGAAAACTCTAGACCGGGAGTTGGCCCGTGCAAAAGTCACAGCAAACAGAGTAGCCGTAGTGGTAGCAAATGAGTGGAAAGACGCTAACGACAAAGTGATGCCTGTAAAGCAATGGCTTGAAGAATGGAGATTCTTGCAGGGAGAAATGCAGCAACTTCGGGACAAGATTGCTATAACTGAAAGAGCTGCCAAGTCAGAAGCTCAGTTGAAATGTGAGAGGATCTTCGAACAGTATTGTCGAAGCACAGCAGAAGGAAGAAGAATCTGTAAACCAGCTGTAGACAAATCATTCAATGGAGGAGATTCTGGGATTGATTGGTGGAGGAGATGGATTGTCTCTAACAGCTCTCGACGTCAGTCTCTTGGTGGAGCGGATAACGCTCCTAAATTATCTTCCAATGGCTTTTTATCCAAGAGAACACCAGTCAGATCCTTGTCCTCCGGCACTAGTTCAGTCTTGAAGCATGCGAAAGGCACTTCAAAATCATTTGATGGCGGTACTAGATCACTGGACAGGGGTAAGGTTCTGTTAAATGGTGCAAGCTCCAATTTCTCAGTCAACCAATCTTGTGAGGGAACCAAAGATGGGGAAGCACAAAATAACTGGAAAGGGAATTCTGATGATAAGCCAAATGAGTTCTCAACAGTGGATACAGAGGATAATGTCCCAGGGGTTTTGTATGATCTGCTACAGAAAGAGGTTGTAGCTTTGAGGAAAGCTGGCCATGAGAAAGATCAAAGCCTCAAAGACAAAGATGACGCTATTGAGATGTTAGCCAAGAAGGTAGACACCTTGGCTAAAGCAATGGAGGTTGAGGCAAGGAAAATGAGAAGAGAAGTTACTGCTATGGAGAAGGAGGTAGCTGCCATGCGTGTGGACAAAGAACACGACAATAGGGCCAAGCAGTTTGGTAGTGCCAAAACCTCTGTCAACAGTGCTCAAGTGCTTTCTGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010005 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0055028 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

364

Amino Acids

40.8

Weight (kDa)

9.44

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MAP70	PF07058	11 - 360	7.5e-145	Microtubule-associated protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14840 AT1G14840 AT1G24764 AT1G24764 AT1G24764 AT1G68060 AT2G01750 AT2G01750
fragaria_vesca	FvH4_4g33511 FvH4_4g33511 FvH4_4g33511
malus_domestica	MD00G1075100.v1.1 MD12G1095700.v1.1 MD13G1020100.v1.1 MD16G1018200.v1.1
prunus_persica	Prupe.1G333700_v2.0.a1 Prupe.7G032400_v2.0.a1 Prupe.7G032700_v2.0.a1
pyrus_communis	pycom12g08260 pycom13g01700 pycom14g08120 pycom16g01650
rosa_chinensis	RchiOBHm_Chr3g0480111 RchiOBHm_Chr4g0443021
rosa_laevigata	RLG00000005962
rosa_multiflora	Rmu_sc0006604.1_g000002 Rmu_ssc0000204.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383650
rosa_rugosa	Rorug04G0343800 Rorug04G0343800
rosa_samantha	Rh3AG231900 Rh3AG232000 Rh4AG398000 Rh4BG409500 Rh4CG425000 Rh4DG404300
rosa_wichuraiana	Rw4G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	490
AccBSI	CCGCTC	1 cut(s)	506
AccI	GTMKAC	2 cut(s)	414, 921
AciI	CCGC	5 cut(s)	10, 43, 106, 506, 630
AclWI	GGATC	2 cut(s)	362, 558
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	1 cut(s)	748
AcyI	GRCGYC	1 cut(s)	487
AfaI	GTAC	1 cut(s)	634
AfiI	CCNNNNNNNGG	2 cut(s)	154, 720
AgsI	TTSAA	6 cut(s)	25, 254, 343, 427, 595, 615
AhlI	ACTAGT	1 cut(s)	581
AjnI	CCWGG	2 cut(s)	114, 802
AluBI	AGCT	9 cut(s)	30, 320, 335, 410, 480, 678, 842, 854, 998
AluI	AGCT	9 cut(s)	30, 320, 335, 410, 480, 678, 842, 854, 998
Alw21I	GWGCWC	1 cut(s)	1075
Alw26I	GTCTC	2 cut(s)	475, 498
AlwI	GGATC	2 cut(s)	362, 558
AoxI	GGCC	3 cut(s)	156, 856, 1032
ApeKI	GCWGC	5 cut(s)	77, 80, 283, 320, 998
ApoI	RAATTY	1 cut(s)	748
ArsI	GACNNNNNNTTYG	2 cut(s)	1047, 1079
AspS9I	GGNCC	2 cut(s)	157, 1032
AsuC2I	CCSGG	1 cut(s)	149
AsuII	TTCGAA	1 cut(s)	360
BalI	TGGCCA	1 cut(s)	858
BarI	GAAGNNNNNNTAC	2 cut(s)	958, 990
Bbv12I	GWGCWC	1 cut(s)	1075
BbvI	GCAGC	5 cut(s)	64, 92, 295, 307, 985
BccI	CCATC	3 cut(s)	456, 620, 713
BceAI	ACGGC	1 cut(s)	173
BcgI	CGANNNNNNTGC	2 cut(s)	272, 306
BciT130I	CCWGG	2 cut(s)	116, 804
BciVI	GTATCC	1 cut(s)	778
BcnI	CCSGG	1 cut(s)	149
BcoDI	GTCTC	2 cut(s)	475, 498
BcuI	ACTAGT	1 cut(s)	581
BfaI	CTAG	3 cut(s)	143, 582, 636
BfmI	CTRYAG	3 cut(s)	78, 411, 824
BfuI	GTATCC	1 cut(s)	778
BisI	GCNGC	5 cut(s)	78, 81, 284, 321, 999
BlsI	GCNGC	5 cut(s)	79, 82, 285, 322, 1000
Bme1390I	CCNGG	3 cut(s)	116, 149, 804
BmgT120I	GGNCC	2 cut(s)	157, 1032
BmiI	GGNNCC	1 cut(s)	712
BmrFI	CCNGG	3 cut(s)	116, 149, 804
BmsI	GCATC	1 cut(s)	222
BoxI	GACNNNNGTC	1 cut(s)	490
BplI	GAGNNNNNCTC	2 cut(s)	124, 156
Bpu14I	TTCGAA	1 cut(s)	360
BpuEI	CTTGAG	1 cut(s)	1059
BpuMI	CCSGG	1 cut(s)	149
BsaHI	GRCGYC	1 cut(s)	487
BsaJI	CCNNGG	4 cut(s)	17, 802, 803, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	154, 720
Bse1I	ACTGG	3 cut(s)	557, 648, 743
Bse3DI	GCAATG	2 cut(s)	251, 945
BseBI	CCWGG	2 cut(s)	116, 804
BseDI	CCNNGG	4 cut(s)	17, 802, 803, 927
BseLI	CCNNNNNNNGG	2 cut(s)	154, 720
BseMI	GCAATG	2 cut(s)	251, 945
BseMII	CTCAG	2 cut(s)	350, 702
BseNI	ACTGG	3 cut(s)	557, 648, 743
BseRI	GAGGAG	3 cut(s)	143, 447, 472
BseXI	GCAGC	5 cut(s)	64, 92, 295, 307, 985
BshFI	GGCC	3 cut(s)	158, 858, 1034
BsiHKAI	GWGCWC	1 cut(s)	1075
BsiSI	CCGG	2 cut(s)	148, 576
BslFI	GGGAC	2 cut(s)	308, 785
BslI	CCNNNNNNNGG	2 cut(s)	154, 720
BsmAI	GTCTC	2 cut(s)	475, 498
BsmFI	GGGAC	2 cut(s)	308, 785
BsnI	GGCC	3 cut(s)	158, 858, 1034
Bsp119I	TTCGAA	1 cut(s)	360
Bsp1286I	GDGCHC	1 cut(s)	1075
Bsp143I	GATC	5 cut(s)	354, 563, 638, 817, 868
BspACI	CCGC	5 cut(s)	10, 43, 106, 506, 630
BspANI	GGCC	3 cut(s)	158, 858, 1034
BspCNI	CTCAG	2 cut(s)	349, 701
BspLI	GGNNCC	1 cut(s)	712
BspMAI	CTGCAG	1 cut(s)	82
BspPI	GGATC	2 cut(s)	362, 558
BspT104I	TTCGAA	1 cut(s)	360
BsrBI	CCGCTC	1 cut(s)	506
BsrDI	GCAATG	2 cut(s)	251, 945
BsrI	ACTGG	3 cut(s)	557, 648, 743
BssECI	CCNNGG	4 cut(s)	17, 802, 803, 927
BssMI	GATC	5 cut(s)	354, 563, 638, 817, 868
BssNI	GRCGYC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	927
Bst2UI	CCWGG	2 cut(s)	116, 804
Bst4CI	ACNGT	4 cut(s)	40, 366, 781, 1070
Bst6I	CTCTTC	2 cut(s)	48, 961
BstACI	GRCGYC	1 cut(s)	487
BstAPI	GCANNNNNTGC	2 cut(s)	65, 86
BstBI	TTCGAA	1 cut(s)	360
BstC8I	GCNNGC	3 cut(s)	600, 676, 856
BstDEI	CTNAG	2 cut(s)	336, 688
BstKTI	GATC	5 cut(s)	357, 566, 641, 820, 871
BstMAI	GTCTC	2 cut(s)	475, 498
BstMBI	GATC	5 cut(s)	354, 563, 638, 817, 868
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 74, 86, 241, 512
BstNI	CCWGG	2 cut(s)	116, 804
BstNSI	RCATGY	1 cut(s)	602
BstPAI	GACNNNNGTC	1 cut(s)	490
BstSCI	CCNGG	3 cut(s)	114, 147, 802
BstSFI	CTRYAG	3 cut(s)	78, 411, 824
BstV1I	GCAGC	5 cut(s)	64, 92, 295, 307, 985
BstX2I	RGATCY	2 cut(s)	354, 563
BstXI	CCANNNNNNTGG	1 cut(s)	1009
BstYI	RGATCY	2 cut(s)	354, 563
BsuI	GTATCC	1 cut(s)	778
BsuRI	GGCC	3 cut(s)	158, 858, 1034
BtsIMutI	CAGTG	3 cut(s)	641, 786, 1075
Cac8I	GCNNGC	3 cut(s)	600, 676, 856
Cfr13I	GGNCC	2 cut(s)	157, 1032
CseI	GACGC	2 cut(s)	224, 902
Csp6I	GTAC	1 cut(s)	633
CviAII	CATG	3 cut(s)	599, 860, 1003
CviQI	GTAC	1 cut(s)	633
DdeI	CTNAG	2 cut(s)	336, 688
DpnI	GATC	5 cut(s)	356, 565, 640, 819, 870
DpnII	GATC	5 cut(s)	354, 563, 638, 817, 868
EaeI	YGGCCR	1 cut(s)	856
Eam1104I	CTCTTC	2 cut(s)	48, 961
EarI	CTCTTC	2 cut(s)	48, 961
Eco130I	CCWWGG	1 cut(s)	927
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	114, 802
EcoT14I	CCWWGG	1 cut(s)	927
ErhI	CCWWGG	1 cut(s)	927
FaeI	CATG	3 cut(s)	602, 863, 1006
FaiI	YATR	6 cut(s)	308, 600, 816, 861, 983, 1004
FaqI	GGGAC	2 cut(s)	308, 785
FatI	CATG	3 cut(s)	598, 859, 1002
FauI	CCCGC	1 cut(s)	36
FblI	GTMKAC	2 cut(s)	414, 921
Fnu4HI	GCNGC	5 cut(s)	78, 81, 284, 321, 999
Fsp4HI	GCNGC	5 cut(s)	78, 81, 284, 321, 999
FspBI	CTAG	3 cut(s)	143, 582, 636
GluI	GCNGC	5 cut(s)	78, 81, 284, 321, 999
HaeIII	GGCC	3 cut(s)	158, 858, 1034
HapII	CCGG	2 cut(s)	148, 576
HgaI	GACGC	2 cut(s)	224, 902
Hin1I	GRCGYC	1 cut(s)	487
Hin1II	CATG	3 cut(s)	602, 863, 1006
HincII	GTYRAC	2 cut(s)	694, 1066
HindII	GTYRAC	2 cut(s)	694, 1066
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	3 cut(s)	264, 396, 437
HpaII	CCGG	2 cut(s)	148, 576
Hpy166II	GTNNAC	6 cut(s)	404, 415, 694, 922, 1012, 1066
Hpy188I	TCNGA	3 cut(s)	331, 563, 754
Hpy188III	TCNNGA	5 cut(s)	143, 293, 483, 592, 1086
Hpy8I	GTNNAC	6 cut(s)	404, 415, 694, 922, 1012, 1066
Hpy99I	CGWCG	1 cut(s)	489
HpyAV	CCTTC	4 cut(s)	380, 910, 982, 1083
HpyCH4III	ACNGT	4 cut(s)	40, 366, 781, 1070
HpyCH4IV	ACGT	1 cut(s)	487
HpyCH4V	TGCA	5 cut(s)	80, 164, 271, 283, 674
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 74, 86, 241, 512
HpyF3I	CTNAG	2 cut(s)	336, 688
HpySE526I	ACGT	1 cut(s)	487
Hsp92I	GRCGYC	1 cut(s)	487
Hsp92II	CATG	3 cut(s)	602, 863, 1006
Kzo9I	GATC	5 cut(s)	354, 563, 638, 817, 868
LmnI	GCTCC	3 cut(s)	503, 520, 683
Lsp1109I	GCAGC	5 cut(s)	64, 92, 295, 307, 985
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	3 cut(s)	143, 582, 636
MaeII	ACGT	1 cut(s)	487
MaeIII	GTNAC	2 cut(s)	169, 973
MalI	GATC	5 cut(s)	356, 565, 640, 819, 870
MbiI	CCGCTC	1 cut(s)	506
MboI	GATC	5 cut(s)	354, 563, 638, 817, 868
MboII	GAAGA	7 cut(s)	65, 266, 349, 402, 405, 519, 978
MflI	RGATCY	2 cut(s)	354, 563
MhlI	GDGCHC	1 cut(s)	1075
MlsI	TGGCCA	1 cut(s)	858
MluCI	AATT	3 cut(s)	521, 682, 748
MluNI	TGGCCA	1 cut(s)	858
MmeI	TCCRAC	1 cut(s)	30
Mox20I	TGGCCA	1 cut(s)	858
MscI	TGGCCA	1 cut(s)	858
MseI	TTAA	1 cut(s)	665
MslI	CAYNNNNRTG	1 cut(s)	1007
Msp20I	TGGCCA	1 cut(s)	858
MspA1I	CMGCKG	2 cut(s)	106, 410
MspI	CCGG	2 cut(s)	148, 576
MspR9I	CCNGG	3 cut(s)	116, 149, 804
MvaI	CCWGG	2 cut(s)	116, 804
MwoI	GCNNNNNNNGC	5 cut(s)	65, 74, 86, 241, 512
NciI	CCSGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	354, 563, 638, 817, 868
NlaIII	CATG	3 cut(s)	602, 863, 1006
NlaIV	GGNNCC	1 cut(s)	712
NmeAIII	GCCGAG	1 cut(s)	42
NmuCI	GTSAC	1 cut(s)	169
NspI	RCATGY	1 cut(s)	602
NspV	TTCGAA	1 cut(s)	360
PaeI	GCATGC	1 cut(s)	602
PasI	CCCWGGG	1 cut(s)	803
PfeI	GAWTC	3 cut(s)	264, 396, 437
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	5 cut(s)	79, 82, 285, 322, 1000
PshAI	GACNNNNGTC	1 cut(s)	490
Psp6I	CCWGG	2 cut(s)	114, 802
PspGI	CCWGG	2 cut(s)	114, 802
PspN4I	GGNNCC	1 cut(s)	712
PspPI	GGNCC	2 cut(s)	157, 1032
PstI	CTGCAG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	354, 563
PvuII	CAGCTG	1 cut(s)	410
RsaI	GTAC	1 cut(s)	634
RsaNI	GTAC	1 cut(s)	633
RseI	CAYNNNNRTG	1 cut(s)	1007
SaqAI	TTAA	1 cut(s)	665
SatI	GCNGC	5 cut(s)	78, 81, 284, 321, 999
Sau3AI	GATC	5 cut(s)	354, 563, 638, 817, 868
Sau96I	GGNCC	2 cut(s)	157, 1032
ScrFI	CCNGG	3 cut(s)	116, 149, 804
SduI	GDGCHC	1 cut(s)	1075
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	3 cut(s)	78, 411, 824
SfuI	TTCGAA	1 cut(s)	360
SmiMI	CAYNNNNRTG	1 cut(s)	1007
SmlI	CTYRAG	1 cut(s)	1074
SmoI	CTYRAG	1 cut(s)	1074
SpeI	ACTAGT	1 cut(s)	581
SphI	GCATGC	1 cut(s)	602
Sse9I	AATT	3 cut(s)	521, 682, 748
SsiI	CCGC	5 cut(s)	10, 43, 106, 506, 630
SspMI	CTAG	3 cut(s)	143, 582, 636
StyD4I	CCNGG	3 cut(s)	114, 147, 802
StyI	CCWWGG	1 cut(s)	927
TaaI	ACNGT	4 cut(s)	40, 366, 781, 1070
TaiI	ACGT	1 cut(s)	490
TaqI	TCGA	3 cut(s)	360, 373, 484
TasI	AATT	3 cut(s)	521, 682, 748
TfiI	GAWTC	3 cut(s)	264, 396, 437
Tru1I	TTAA	1 cut(s)	665
Tru9I	TTAA	1 cut(s)	665
TscAI	CASTG	3 cut(s)	648, 786, 1075
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	5 cut(s)	77, 80, 283, 320, 998
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	3 cut(s)	648, 786, 1075
XapI	RAATTY	1 cut(s)	748
XbaI	TCTAGA	1 cut(s)	142
XceI	RCATGY	1 cut(s)	602
XmiI	GTMKAC	2 cut(s)	414, 921
XspI	CTAG	3 cut(s)	143, 582, 636
ZraI	GACGTC	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.