Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000204.1

Orthogroup ID

OG0003156

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 4368

Gene Structure 4368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000204.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

atgtgtcgcccgtcaggcaacatccccacgacgtcaggggagacgccggagagccaccggacgagggatagagatgccttcgccgccgcaactccgcaagctttaaggcttaaagcatacagccgtcttagctcagctggactgcggggaggtgtgctcagatcggtggttttcatggaggaagtttccggcgacggagccgcgtcgtctccgatgatggagttcagcggcggcaatggactgccgccggggtacaatccgacgcctccgccgctcacggtgtcgggatcgttcaaggaggggaggagctcgtcgcggaggagagcaatcaggaggccaagcatggacggcgacgagttcattaacctcctgcacggctcggatccggtcaaggtggagctcaatcgcctcgagaatgaagtcagagataaggaccgagagttgggagaggcccaggctcagatcaaggctctcaagctctctgagagagccagggaaaaggctgttgaagagctcactgatgaactgacgaaggtggacgagaagctcaagttaacagaatctcttctagaaaacaaaaatcttgaaataaagaagatcaatgatgagaagaaagcttctatggcagctcaatttgcagctgaagctactctacgtagggttcatgctgctcaaaaagatgatgatatgcctccaatcgaagccattcttgcacctttggaggctgagctcaagcttgctcggcaagagattgcaaagcttcaagatgataacaaagctttggatcggcttaccaaatcaaaagaagcagctttacttgaggctgagaggactgtggaggttgccttggttaaggcctccatggtggatgaccttcaaaataaaaaccaagagctgatgaaacagatcgaaatttgtcaggaagaaaacaaaattttagatagaatgcatagacaaaaggttgccgaggttgaaaagcttacgcagactgtgcgggagttggaagaggcagttcttgctggtggtgctgcagccaatgctgtcagggattaccagcggaagttccaggagatgaat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007275 GO:0007389 GO:0008017 GO:0008092 GO:0008150 GO:0009832 GO:0009987 GO:0010005 GO:0010051 GO:0015630 GO:0015631 GO:0016043 GO:0030863 GO:0030981 GO:0032501 GO:0032502 GO:0042546 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048856 GO:0055028 GO:0071554 GO:0071669 GO:0071840 GO:0071944 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MAP70

Protein Analysis

359

Amino Acids

39.85

Weight (kDa)

5.73

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003156)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14840 AT1G14840 AT1G24764 AT1G24764 AT1G24764 AT1G68060 AT2G01750 AT2G01750
fragaria_vesca	FvH4_4g33511 FvH4_4g33511 FvH4_4g33511
malus_domestica	MD00G1075100.v1.1 MD12G1095700.v1.1 MD13G1020100.v1.1 MD16G1018200.v1.1
prunus_persica	Prupe.1G333700_v2.0.a1 Prupe.7G032400_v2.0.a1 Prupe.7G032700_v2.0.a1
pyrus_communis	pycom12g08260 pycom13g01700 pycom14g08120 pycom16g01650
rosa_chinensis	RchiOBHm_Chr3g0480111 RchiOBHm_Chr4g0443021
rosa_laevigata	RLG00000005962
rosa_multiflora	Rmu_sc0006604.1_g000002 Rmu_ssc0000204.1_g000001
rosa_roxburghii	Rroxscaffold_5G00383650
rosa_rugosa	Rorug04G0343800 Rorug04G0343800
rosa_samantha	Rh3AG231900 Rh3AG232000 Rh4AG398000 Rh4BG409500 Rh4CG425000 Rh4DG404300
rosa_wichuraiana	Rw4G034280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	274
AccII	CGCG	2 cut(s)	203, 316
AclWI	GGATC	4 cut(s)	295, 377, 390, 792
AcsI	RAATTY	2 cut(s)	912, 933
AcuI	CTGAAG	1 cut(s)	663
AcyI	GRCGYC	3 cut(s)	32, 44, 263
AfaI	GTAC	1 cut(s)	254
AfiI	CCNNNNNNNGG	2 cut(s)	64, 442
AgsI	TTSAA	6 cut(s)	295, 509, 587, 764, 878, 974
AjnI	CCWGG	3 cut(s)	453, 491, 1065
Alw21I	GWGCWC	5 cut(s)	159, 311, 402, 516, 732
Alw26I	GTCTC	2 cut(s)	35, 213
AlwI	GGATC	4 cut(s)	295, 377, 390, 792
Ama87I	CYCGRG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	335, 450, 855
ApeKI	GCWGC	6 cut(s)	626, 638, 668, 809, 1028, 1031
ApoI	RAATTY	2 cut(s)	912, 933
Asp700I	GAANNNNTTC	2 cut(s)	564, 705
AspS9I	GGNCC	2 cut(s)	433, 451
AsuC2I	CCSGG	1 cut(s)	249
AvaI	CYCGRG	1 cut(s)	410
AvaII	GGWCC	1 cut(s)	433
BamHI	GGATCC	1 cut(s)	382
BanII	GRGCYC	4 cut(s)	311, 402, 516, 732
BarI	GAAGNNNNNNTAC	4 cut(s)	636, 668, 798, 830
Bbv12I	GWGCWC	5 cut(s)	159, 311, 402, 516, 732
BbvI	GCAGC	6 cut(s)	638, 650, 655, 821, 1015, 1043
BccI	CCATC	1 cut(s)	211
BceAI	ACGGC	3 cut(s)	108, 364, 391
BciT130I	CCWGG	3 cut(s)	455, 493, 1067
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	2 cut(s)	35, 213
BfaI	CTAG	1 cut(s)	569
BfmI	CTRYAG	1 cut(s)	1029
BglI	GCCNNNNNGGC	1 cut(s)	15
BlpI	GCTNAGC	2 cut(s)	133, 726
Bme1390I	CCNGG	4 cut(s)	249, 455, 493, 1067
Bme18I	GGWCC	1 cut(s)	433
BmeT110I	CYCGRG	1 cut(s)	410
BmgT120I	GGNCC	2 cut(s)	433, 451
BmiI	GGNNCC	2 cut(s)	199, 384
BmrFI	CCNGG	4 cut(s)	249, 455, 493, 1067
BmsI	GCATC	1 cut(s)	64
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
Bpu1102I	GCTNAGC	2 cut(s)	133, 726
BpuEI	CTTGAG	4 cut(s)	458, 533, 716, 839
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	656
BsaHI	GRCGYC	3 cut(s)	32, 44, 263
BsaJI	CCNNGG	6 cut(s)	248, 453, 492, 846, 861, 966
BsaWI	WCCGGW	2 cut(s)	57, 385
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 442
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	3 cut(s)	455, 493, 1067
BseDI	CCNNGG	6 cut(s)	248, 453, 492, 846, 861, 966
BseGI	GGATG	2 cut(s)	21, 874
BseLI	CCNNNNNNNGG	2 cut(s)	64, 442
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	6 cut(s)	147, 172, 473, 474, 717, 816
BseRI	GAGGAG	2 cut(s)	319, 334
BseXI	GCAGC	6 cut(s)	638, 650, 655, 821, 1015, 1043
BsgI	GTGCAG	1 cut(s)	356
Bsh1236I	CGCG	2 cut(s)	203, 316
BshFI	GGCC	3 cut(s)	337, 452, 857
BsiHKAI	GWGCWC	5 cut(s)	159, 311, 402, 516, 732
BsiHKCI	CYCGRG	1 cut(s)	410
BsiSI	CCGG	5 cut(s)	47, 58, 189, 248, 386
BslI	CCNNNNNNNGG	2 cut(s)	64, 442
BsmAI	GTCTC	2 cut(s)	35, 213
BsmBI	CGTCTC	2 cut(s)	35, 213
BsmI	GAATGC	1 cut(s)	951
BsnI	GGCC	3 cut(s)	337, 452, 857
BsoBI	CYCGRG	1 cut(s)	410
Bsp1286I	GDGCHC	5 cut(s)	159, 311, 402, 516, 732
Bsp143I	GATC	7 cut(s)	161, 287, 382, 462, 597, 784, 906
Bsp1720I	GCTNAGC	2 cut(s)	133, 726
Bsp19I	CCATGG	1 cut(s)	861
BspANI	GGCC	3 cut(s)	337, 452, 857
BspCNI	CTCAG	6 cut(s)	146, 171, 472, 475, 718, 817
BspFNI	CGCG	2 cut(s)	203, 316
BspLI	GGNNCC	2 cut(s)	199, 384
BspMAI	CTGCAG	1 cut(s)	1033
BspPI	GGATC	4 cut(s)	295, 377, 390, 792
BspQI	GCTCTTC	1 cut(s)	504
BsrBI	CCGCTC	1 cut(s)	274
BsrDI	GCAATG	1 cut(s)	241
BssECI	CCNNGG	6 cut(s)	248, 453, 492, 846, 861, 966
BssMI	GATC	7 cut(s)	161, 287, 382, 462, 597, 784, 906
BssNI	GRCGYC	3 cut(s)	32, 44, 263
BssT1I	CCWWGG	2 cut(s)	846, 861
Bst2UI	CCWGG	3 cut(s)	455, 493, 1067
Bst4CI	ACNGT	3 cut(s)	280, 835, 991
Bst6I	CTCTTC	3 cut(s)	504, 570, 999
BstACI	GRCGYC	3 cut(s)	32, 44, 263
BstAPI	GCANNNNNTGC	3 cut(s)	991, 1016, 1037
BstBAI	YACGTR	1 cut(s)	656
BstC8I	GCNNGC	2 cut(s)	99, 738
BstDEI	CTNAG	7 cut(s)	128, 133, 158, 459, 483, 726, 825
BstDSI	CCRYGG	1 cut(s)	861
BstF5I	GGATG	2 cut(s)	21, 874
BstFNI	CGCG	2 cut(s)	203, 316
BstKTI	GATC	7 cut(s)	164, 290, 385, 465, 600, 787, 909
BstMAI	GTCTC	2 cut(s)	35, 213
BstMBI	GATC	7 cut(s)	161, 287, 382, 462, 597, 784, 906
BstNI	CCWGG	3 cut(s)	455, 493, 1067
BstSCI	CCNGG	4 cut(s)	247, 453, 491, 1065
BstSFI	CTRYAG	1 cut(s)	1029
BstSNI	TACGTA	1 cut(s)	656
BstUI	CGCG	2 cut(s)	203, 316
BstV1I	GCAGC	6 cut(s)	638, 650, 655, 821, 1015, 1043
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	3 cut(s)	337, 452, 857
BtgI	CCRYGG	1 cut(s)	861
BtsCI	GGATG	2 cut(s)	21, 874
BtsIMutI	CAGTG	1 cut(s)	516
Cac8I	GCNNGC	2 cut(s)	99, 738
Cfr13I	GGNCC	2 cut(s)	433, 451
CseI	GACGC	3 cut(s)	52, 192, 271
Csp6I	GTAC	1 cut(s)	253
CviAII	CATG	4 cut(s)	175, 343, 665, 862
CviQI	GTAC	1 cut(s)	253
DdeI	CTNAG	7 cut(s)	128, 133, 158, 459, 483, 726, 825
DpnI	GATC	7 cut(s)	163, 289, 384, 464, 599, 786, 908
DpnII	GATC	7 cut(s)	161, 287, 382, 462, 597, 784, 906
Eam1104I	CTCTTC	3 cut(s)	504, 570, 999
EarI	CTCTTC	3 cut(s)	504, 570, 999
EciI	GGCGGA	1 cut(s)	258
Ecl136II	GAGCTC	4 cut(s)	309, 400, 514, 730
Eco105I	TACGTA	1 cut(s)	656
Eco130I	CCWWGG	2 cut(s)	846, 861
Eco147I	AGGCCT	1 cut(s)	857
Eco24I	GRGCYC	4 cut(s)	311, 402, 516, 732
Eco47I	GGWCC	1 cut(s)	433
Eco53kI	GAGCTC	4 cut(s)	309, 400, 514, 730
Eco57I	CTGAAG	1 cut(s)	663
Eco88I	CYCGRG	1 cut(s)	410
EcoICRI	GAGCTC	4 cut(s)	309, 400, 514, 730
EcoRII	CCWGG	3 cut(s)	453, 491, 1065
EcoT14I	CCWWGG	2 cut(s)	846, 861
EcoT22I	ATGCAT	1 cut(s)	951
EcoT38I	GRGCYC	4 cut(s)	311, 402, 516, 732
ErhI	CCWWGG	2 cut(s)	846, 861
Esp3I	CGTCTC	2 cut(s)	35, 213
FaeI	CATG	4 cut(s)	178, 346, 668, 865
FaiI	YATR	8 cut(s)	118, 176, 344, 623, 666, 689, 863, 951
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FatI	CATG	4 cut(s)	174, 342, 664, 861
FauI	CCCGC	2 cut(s)	138, 987
FokI	GGATG	2 cut(s)	8, 881
FriOI	GRGCYC	4 cut(s)	311, 402, 516, 732
FspBI	CTAG	1 cut(s)	569
HaeIII	GGCC	3 cut(s)	337, 452, 857
HapII	CCGG	5 cut(s)	47, 58, 189, 248, 386
HgaI	GACGC	3 cut(s)	52, 192, 271
Hin1I	GRCGYC	3 cut(s)	32, 44, 263
Hin1II	CATG	4 cut(s)	178, 346, 668, 865
HincII	GTYRAC	1 cut(s)	555
HindII	GTYRAC	1 cut(s)	555
HindIII	AAGCTT	6 cut(s)	99, 615, 734, 758, 777, 977
HinfI	GANTC	1 cut(s)	560
HpaI	GTTAAC	1 cut(s)	555
HpaII	CCGG	5 cut(s)	47, 58, 189, 248, 386
Hpy166II	GTNNAC	2 cut(s)	538, 555
Hpy188I	TCNGA	7 cut(s)	161, 213, 261, 382, 425, 462, 484
Hpy188III	TCNNGA	7 cut(s)	285, 331, 412, 569, 584, 764, 920
Hpy8I	GTNNAC	2 cut(s)	538, 555
Hpy99I	CGWCG	6 cut(s)	34, 197, 208, 265, 316, 356
HpyAV	CCTTC	3 cut(s)	88, 526, 884
HpyCH4III	ACNGT	3 cut(s)	280, 835, 991
HpyCH4IV	ACGT	2 cut(s)	32, 655
HpyCH4V	TGCA	6 cut(s)	373, 638, 713, 755, 949, 1031
HpyF3I	CTNAG	7 cut(s)	128, 133, 158, 459, 483, 726, 825
HpySE526I	ACGT	2 cut(s)	32, 655
Hsp92I	GRCGYC	3 cut(s)	32, 44, 263
Hsp92II	CATG	4 cut(s)	178, 346, 668, 865
KspAI	GTTAAC	1 cut(s)	555
Kzo9I	GATC	7 cut(s)	161, 287, 382, 462, 597, 784, 906
LguI	GCTCTTC	1 cut(s)	504
LmnI	GCTCC	3 cut(s)	197, 306, 397
Lsp1109I	GCAGC	6 cut(s)	638, 650, 655, 821, 1015, 1043
LweI	GCATC	1 cut(s)	64
MaeI	CTAG	1 cut(s)	569
MaeII	ACGT	2 cut(s)	32, 655
MalI	GATC	7 cut(s)	163, 289, 384, 464, 599, 786, 908
MbiI	CCGCTC	1 cut(s)	274
MboI	GATC	7 cut(s)	161, 287, 382, 462, 597, 784, 906
MboII	GAAGA	6 cut(s)	521, 557, 607, 622, 935, 1016
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	5 cut(s)	159, 311, 402, 516, 732
MluCI	AATT	3 cut(s)	632, 912, 933
MmeI	TCCRAC	2 cut(s)	284, 981
Mph1103I	ATGCAT	1 cut(s)	951
MroXI	GAANNNNTTC	2 cut(s)	564, 705
MseI	TTAA	5 cut(s)	104, 111, 363, 554, 852
MspA1I	CMGCKG	4 cut(s)	137, 228, 641, 1057
MspI	CCGG	5 cut(s)	47, 58, 189, 248, 386
MspR9I	CCNGG	4 cut(s)	249, 455, 493, 1067
Mva1269I	GAATGC	1 cut(s)	951
MvaI	CCWGG	3 cut(s)	455, 493, 1067
MvnI	CGCG	2 cut(s)	203, 316
NciI	CCSGG	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	861
NdeII	GATC	7 cut(s)	161, 287, 382, 462, 597, 784, 906
NlaIII	CATG	4 cut(s)	178, 346, 668, 865
NlaIV	GGNNCC	2 cut(s)	199, 384
NmeAIII	GCCGAG	2 cut(s)	721, 991
NsiI	ATGCAT	1 cut(s)	951
PaeR7I	CTCGAG	1 cut(s)	410
PceI	AGGCCT	1 cut(s)	857
PciSI	GCTCTTC	1 cut(s)	504
PctI	GAATGC	1 cut(s)	951
PdmI	GAANNNNTTC	2 cut(s)	564, 705
PfeI	GAWTC	1 cut(s)	560
PfoI	TCCNGGA	1 cut(s)	1065
Ppu21I	YACGTR	1 cut(s)	656
Psp124BI	GAGCTC	4 cut(s)	311, 402, 516, 732
Psp6I	CCWGG	3 cut(s)	453, 491, 1065
PspGI	CCWGG	3 cut(s)	453, 491, 1065
PspN4I	GGNNCC	2 cut(s)	199, 384
PspPI	GGNCC	2 cut(s)	433, 451
PstI	CTGCAG	1 cut(s)	1033
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	2 cut(s)	137, 641
RsaI	GTAC	1 cut(s)	254
RsaNI	GTAC	1 cut(s)	253
SacI	GAGCTC	4 cut(s)	311, 402, 516, 732
SapI	GCTCTTC	1 cut(s)	504
SaqAI	TTAA	5 cut(s)	104, 111, 363, 554, 852
Sau3AI	GATC	7 cut(s)	161, 287, 382, 462, 597, 784, 906
Sau96I	GGNCC	2 cut(s)	433, 451
ScrFI	CCNGG	4 cut(s)	249, 455, 493, 1067
SduI	GDGCHC	5 cut(s)	159, 311, 402, 516, 732
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	1029
Sfr274I	CTCGAG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	433
SlaI	CTCGAG	1 cut(s)	410
SmlI	CTYRAG	5 cut(s)	410, 473, 548, 731, 818
SmoI	CTYRAG	5 cut(s)	410, 473, 548, 731, 818
SnaBI	TACGTA	1 cut(s)	656
Sse9I	AATT	3 cut(s)	632, 912, 933
SseBI	AGGCCT	1 cut(s)	857
SspMI	CTAG	1 cut(s)	569
SstI	GAGCTC	4 cut(s)	311, 402, 516, 732
StuI	AGGCCT	1 cut(s)	857
StyD4I	CCNGG	4 cut(s)	247, 453, 491, 1065
StyI	CCWWGG	2 cut(s)	846, 861
TaaI	ACNGT	3 cut(s)	280, 835, 991
TaiI	ACGT	2 cut(s)	35, 658
TaqI	TCGA	3 cut(s)	411, 699, 909
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	3 cut(s)	632, 912, 933
TauI	GCSGC	7 cut(s)	86, 89, 203, 231, 234, 247, 274
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	5 cut(s)	104, 111, 363, 554, 852
Tru9I	TTAA	5 cut(s)	104, 111, 363, 554, 852
TscAI	CASTG	1 cut(s)	523
TseI	GCWGC	6 cut(s)	626, 638, 668, 809, 1028, 1031
TspDTI	ATGAA	6 cut(s)	163, 349, 432, 537, 653, 914
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	2 cut(s)	912, 933
XbaI	TCTAGA	1 cut(s)	568
XhoI	CTCGAG	1 cut(s)	410
XmnI	GAANNNNTTC	2 cut(s)	564, 705
XspI	CTAG	1 cut(s)	569
ZraI	GACGTC	1 cut(s)	33
Zsp2I	ATGCAT	1 cut(s)	951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.