WD40 repeats
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50590 AT3G50590 |
| fragaria_vesca | FvH4_1g15690 FvH4_1g15690 FvH4_1g15690 |
| malus_domestica | MD02G1168900.v1.1 MD15G1280900.v1.1 |
| prunus_persica | Prupe.7G136400_v2.0.a1 |
| pyrus_communis | pycom15g24420 pycom15g24430 |
| rosa_chinensis | RchiOBHm_Chr2g0105001 |
| rosa_laevigata | RLG00000017388 |
| rosa_multiflora | Rmu_co8378509.1_g000001 Rmu_sc0000641.1_g000029 |
| rosa_roxburghii | Rroxscaffold_2G00138590 |
| rosa_rugosa | Rorug02G0124900 Rorug02G0124900 |
| rosa_samantha | Rh2AG175300 Rh2BG183200 Rh2BG183300 Rh2CG180000 Rh2DG181700 |
| rosa_wichuraiana | Rw2G013780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 830 |
| AarI | CACCTGC | 1 cut(s) | 3218 |
| Acc36I | ACCTGC | 2 cut(s) | 3218, 3730 |
| Acc65I | GGTACC | 1 cut(s) | 4201 |
| AccB1I | GGYRCC | 3 cut(s) | 2615, 3113, 4201 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1813 |
| AccBSI | CCGCTC | 1 cut(s) | 2940 |
| AccII | CGCG | 1 cut(s) | 949 |
| AccIII | TCCGGA | 1 cut(s) | 1768 |
| AcuI | CTGAAG | 7 cut(s) | 732, 1086, 1355, 1818, 2030, 3249, 3405 |
| AcyI | GRCGYC | 1 cut(s) | 356 |
| AfaI | GTAC | 6 cut(s) | 181, 250, 670, 1535, 2043, 4203 |
| AflIII | ACRYGT | 1 cut(s) | 37 |
| AgeI | ACCGGT | 1 cut(s) | 2727 |
| AleI | CACNNNNGTG | 2 cut(s) | 2603, 4326 |
| Alw21I | GWGCWC | 1 cut(s) | 4366 |
| Alw26I | GTCTC | 6 cut(s) | 694, 1014, 2526, 3477, 4068, 4661 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 25, 1109, 4145, 4850 |
| Aor13HI | TCCGGA | 1 cut(s) | 1768 |
| AoxI | GGCC | 5 cut(s) | 1419, 2201, 4761, 4841, 4847 |
| AseI | ATTAAT | 1 cut(s) | 834 |
| AsiGI | ACCGGT | 1 cut(s) | 2727 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 1785, 1879, 2409, 4299 |
| Asp718I | GGTACC | 1 cut(s) | 4201 |
| AspLEI | GCGC | 6 cut(s) | 100, 439, 2311, 2682, 2862, 4348 |
| AsuC2I | CCSGG | 2 cut(s) | 1509, 4788 |
| BaeGI | GKGCMC | 2 cut(s) | 1285, 4120 |
| BaeI | ACNNNNGTAYC | 6 cut(s) | 171, 204, 324, 357, 1809, 1842 |
| BamHI | GGATCC | 1 cut(s) | 3602 |
| BanI | GGYRCC | 3 cut(s) | 2615, 3113, 4201 |
| BanII | GRGCYC | 1 cut(s) | 2400 |
| BauI | CACGAG | 2 cut(s) | 3669, 4326 |
| BbsI | GAAGAC | 3 cut(s) | 3107, 3255, 3935 |
| Bbv12I | GWGCWC | 1 cut(s) | 4366 |
| BceAI | ACGGC | 2 cut(s) | 92, 1342 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 122, 156 |
| BciVI | GTATCC | 3 cut(s) | 1810, 1949, 4526 |
| BclI | TGATCA | 1 cut(s) | 3136 |
| BcnI | CCSGG | 2 cut(s) | 1509, 4788 |
| BcoDI | GTCTC | 6 cut(s) | 694, 1014, 2526, 3477, 4068, 4661 |
| BfaI | CTAG | 9 cut(s) | 962, 1050, 2129, 2456, 2538, 2685, 3972, 4106, 4428 |
| BfmI | CTRYAG | 6 cut(s) | 1543, 1890, 3078, 3360, 3504, 4137 |
| BfoI | RGCGCY | 2 cut(s) | 101, 440 |
| BfuAI | ACCTGC | 2 cut(s) | 3218, 3730 |
| BfuI | GTATCC | 3 cut(s) | 1810, 1949, 4526 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1238 |
| BglII | AGATCT | 2 cut(s) | 2125, 4108 |
| BlpI | GCTNAGC | 1 cut(s) | 276 |
| BmcAI | AGTACT | 1 cut(s) | 1535 |
| BmrI | ACTGGG | 5 cut(s) | 2844, 3034, 3250, 4082, 4690 |
| BmuI | ACTGGG | 5 cut(s) | 2844, 3034, 3250, 4082, 4690 |
| BpiI | GAAGAC | 3 cut(s) | 3107, 3255, 3935 |
| BpmI | CTGGAG | 5 cut(s) | 1232, 1388, 1488, 3627, 4260 |
| Bpu10I | CCTNAGC | 2 cut(s) | 3614, 4314 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 276 |
| BpuEI | CTTGAG | 8 cut(s) | 260, 1558, 2565, 3864, 3951, 4016, 4021, 4274 |
| BpuMI | CCSGG | 2 cut(s) | 1509, 4788 |
| BsaHI | GRCGYC | 1 cut(s) | 356 |
| BsaI | GGTCTC | 3 cut(s) | 694, 2526, 4661 |
| BsaWI | WCCGGW | 2 cut(s) | 1768, 2727 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 539, 569, 1011, 1041, 3801, 3831 |
| Bse118I | RCCGGY | 1 cut(s) | 2727 |
| Bse3DI | GCAATG | 2 cut(s) | 59, 1227 |
| BseAI | TCCGGA | 1 cut(s) | 1768 |
| BseMI | GCAATG | 2 cut(s) | 59, 1227 |
| BseRI | GAGGAG | 3 cut(s) | 3630, 3657, 4639 |
| BseSI | GKGCMC | 2 cut(s) | 1285, 4120 |
| BseYI | CCCAGC | 2 cut(s) | 2247, 2740 |
| BsgI | GTGCAG | 4 cut(s) | 38, 2190, 3435, 4073 |
| Bsh1236I | CGCG | 1 cut(s) | 949 |
| BshFI | GGCC | 5 cut(s) | 1421, 2203, 4763, 4843, 4849 |
| BshNI | GGYRCC | 3 cut(s) | 2615, 3113, 4201 |
| BshTI | ACCGGT | 1 cut(s) | 2727 |
| BsiHKAI | GWGCWC | 1 cut(s) | 4366 |
| BsiSI | CCGG | 4 cut(s) | 1509, 1769, 2728, 4787 |
| BslFI | GGGAC | 7 cut(s) | 192, 1815, 3237, 3460, 3862, 4010, 4366 |
| BsmAI | GTCTC | 6 cut(s) | 694, 1014, 2526, 3477, 4068, 4661 |
| BsmFI | GGGAC | 7 cut(s) | 192, 1815, 3237, 3460, 3862, 4010, 4366 |
| BsmI | GAATGC | 2 cut(s) | 220, 295 |
| BsnI | GGCC | 5 cut(s) | 1421, 2203, 4763, 4843, 4849 |
| Bso31I | GGTCTC | 3 cut(s) | 694, 2526, 4661 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1285, 2400, 4120, 4366 |
| Bsp13I | TCCGGA | 1 cut(s) | 1768 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 276 |
| BspANI | GGCC | 5 cut(s) | 1421, 2203, 4763, 4843, 4849 |
| BspEI | TCCGGA | 1 cut(s) | 1768 |
| BspFNI | CGCG | 1 cut(s) | 949 |
| BspMAI | CTGCAG | 4 cut(s) | 3082, 3364, 3508, 4141 |
| BspMI | ACCTGC | 2 cut(s) | 3218, 3730 |
| BspQI | GCTCTTC | 1 cut(s) | 427 |
| BspT107I | GGYRCC | 3 cut(s) | 2615, 3113, 4201 |
| BspTNI | GGTCTC | 3 cut(s) | 694, 2526, 4661 |
| BsrBI | CCGCTC | 1 cut(s) | 2940 |
| BsrDI | GCAATG | 2 cut(s) | 59, 1227 |
| BsrFI | RCCGGY | 1 cut(s) | 2727 |
| BssAI | RCCGGY | 1 cut(s) | 2727 |
| BssNI | GRCGYC | 1 cut(s) | 356 |
| BssSI | CACGAG | 2 cut(s) | 3669, 4326 |
| BssT1I | CCWWGG | 6 cut(s) | 792, 1833, 2516, 2956, 3291, 4120 |
| Bst2BI | CACGAG | 2 cut(s) | 3669, 4326 |
| Bst6I | CTCTTC | 8 cut(s) | 427, 810, 1794, 2415, 3166, 3435, 4392, 4494 |
| BstACI | GRCGYC | 1 cut(s) | 356 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 2107, 3929, 4439, 4800 |
| BstDSI | CCRYGG | 1 cut(s) | 4207 |
| BstEII | GGTNACC | 1 cut(s) | 1208 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3672 |
| BstFNI | CGCG | 1 cut(s) | 949 |
| BstH2I | RGCGCY | 2 cut(s) | 101, 440 |
| BstHHI | GCGC | 6 cut(s) | 100, 439, 2311, 2682, 2862, 4348 |
| BstMAI | GTCTC | 6 cut(s) | 694, 1014, 2526, 3477, 4068, 4661 |
| BstNSI | RCATGY | 4 cut(s) | 41, 199, 489, 2754 |
| BstPI | GGTNACC | 1 cut(s) | 1208 |
| BstSFI | CTRYAG | 6 cut(s) | 1543, 1890, 3078, 3360, 3504, 4137 |
| BstSLI | GKGCMC | 2 cut(s) | 1285, 4120 |
| BstUI | CGCG | 1 cut(s) | 949 |
| BstV2I | GAAGAC | 3 cut(s) | 3107, 3255, 3935 |
| BstX2I | RGATCY | 7 cut(s) | 28, 645, 1097, 2125, 3602, 4108, 4687 |
| BstYI | RGATCY | 7 cut(s) | 28, 645, 1097, 2125, 3602, 4108, 4687 |
| BsuI | GTATCC | 3 cut(s) | 1810, 1949, 4526 |
| BsuRI | GGCC | 5 cut(s) | 1421, 2203, 4763, 4843, 4849 |
| BtgI | CCRYGG | 1 cut(s) | 4207 |
| BtsI | GCAGTG | 4 cut(s) | 3357, 3439, 3513, 3833 |
| BveI | ACCTGC | 2 cut(s) | 3218, 3730 |
| CaiI | CAGNNNCTG | 4 cut(s) | 25, 1109, 4145, 4850 |
| CfoI | GCGC | 6 cut(s) | 100, 439, 2311, 2682, 2862, 4348 |
| Cfr10I | RCCGGY | 1 cut(s) | 2727 |
| CseI | GACGC | 4 cut(s) | 364, 1349, 2107, 4178 |
| CsiI | ACCWGGT | 1 cut(s) | 3912 |
| Csp6I | GTAC | 6 cut(s) | 180, 249, 669, 1534, 2042, 4202 |
| CspAI | ACCGGT | 1 cut(s) | 2727 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1584, 1619 |
| CviQI | GTAC | 6 cut(s) | 180, 249, 669, 1534, 2042, 4202 |
| Eam1104I | CTCTTC | 8 cut(s) | 427, 810, 1794, 2415, 3166, 3435, 4392, 4494 |
| EarI | CTCTTC | 8 cut(s) | 427, 810, 1794, 2415, 3166, 3435, 4392, 4494 |
| EciI | GGCGGA | 2 cut(s) | 2723, 3670 |
| Eco130I | CCWWGG | 6 cut(s) | 792, 1833, 2516, 2956, 3291, 4120 |
| Eco24I | GRGCYC | 1 cut(s) | 2400 |
| Eco31I | GGTCTC | 3 cut(s) | 694, 2526, 4661 |
| Eco32I | GATATC | 2 cut(s) | 898, 1221 |
| Eco57I | CTGAAG | 7 cut(s) | 732, 1086, 1355, 1818, 2030, 3249, 3405 |
| Eco91I | GGTNACC | 1 cut(s) | 1208 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3672 |
| EcoO109I | RGGNCCY | 6 cut(s) | 1419, 3002, 3610, 3849, 4424, 4847 |
| EcoO65I | GGTNACC | 1 cut(s) | 1208 |
| EcoRI | GAATTC | 1 cut(s) | 3392 |
| EcoRV | GATATC | 2 cut(s) | 898, 1221 |
| EcoT14I | CCWWGG | 6 cut(s) | 792, 1833, 2516, 2956, 3291, 4120 |
| EcoT22I | ATGCAT | 3 cut(s) | 145, 2752, 3925 |
| EcoT38I | GRGCYC | 1 cut(s) | 2400 |
| ErhI | CCWWGG | 6 cut(s) | 792, 1833, 2516, 2956, 3291, 4120 |
| FaqI | GGGAC | 7 cut(s) | 192, 1815, 3237, 3460, 3862, 4010, 4366 |
| FauI | CCCGC | 3 cut(s) | 3232, 4751, 4796 |
| FbaI | TGATCA | 1 cut(s) | 3136 |
| FriOI | GRGCYC | 1 cut(s) | 2400 |
| FspBI | CTAG | 9 cut(s) | 962, 1050, 2129, 2456, 2538, 2685, 3972, 4106, 4428 |
| GlaI | GCGC | 6 cut(s) | 99, 438, 2310, 2681, 2861, 4347 |
| GsaI | CCCAGC | 2 cut(s) | 2251, 2744 |
| GsuI | CTGGAG | 5 cut(s) | 1232, 1388, 1488, 3627, 4260 |
| HaeII | RGCGCY | 2 cut(s) | 101, 440 |
| HaeIII | GGCC | 5 cut(s) | 1421, 2203, 4763, 4843, 4849 |
| HapII | CCGG | 4 cut(s) | 1509, 1769, 2728, 4787 |
| HgaI | GACGC | 4 cut(s) | 364, 1349, 2107, 4178 |
| HhaI | GCGC | 6 cut(s) | 100, 439, 2311, 2682, 2862, 4348 |
| Hin1I | GRCGYC | 1 cut(s) | 356 |
| Hin6I | GCGC | 6 cut(s) | 98, 437, 2309, 2680, 2860, 4346 |
| HinP1I | GCGC | 6 cut(s) | 98, 437, 2309, 2680, 2860, 4346 |
| HincII | GTYRAC | 4 cut(s) | 693, 1899, 3977, 4728 |
| HindII | GTYRAC | 4 cut(s) | 693, 1899, 3977, 4728 |
| HindIII | AAGCTT | 4 cut(s) | 1124, 3213, 3873, 4296 |
| HpaII | CCGG | 4 cut(s) | 1509, 1769, 2728, 4787 |
| Hpy99I | CGWCG | 4 cut(s) | 16, 113, 666, 2101 |
| HpyCH4IV | ACGT | 1 cut(s) | 46 |
| HpySE526I | ACGT | 1 cut(s) | 46 |
| Hsp92I | GRCGYC | 1 cut(s) | 356 |
| HspAI | GCGC | 6 cut(s) | 98, 437, 2309, 2680, 2860, 4346 |
| Kpn2I | TCCGGA | 1 cut(s) | 1768 |
| KpnI | GGTACC | 1 cut(s) | 4205 |
| Ksp22I | TGATCA | 1 cut(s) | 3136 |
| LguI | GCTCTTC | 1 cut(s) | 427 |
| MabI | ACCWGGT | 1 cut(s) | 3912 |
| MaeI | CTAG | 9 cut(s) | 962, 1050, 2129, 2456, 2538, 2685, 3972, 4106, 4428 |
| MaeII | ACGT | 1 cut(s) | 46 |
| MaeIII | GTNAC | 7 cut(s) | 403, 774, 781, 1208, 2571, 3176, 4381 |
| MbiI | CCGCTC | 1 cut(s) | 2940 |
| MfeI | CAATTG | 2 cut(s) | 882, 3492 |
| MflI | RGATCY | 7 cut(s) | 28, 645, 1097, 2125, 3602, 4108, 4687 |
| MhlI | GDGCHC | 4 cut(s) | 1285, 2400, 4120, 4366 |
| MlyI | GAGTC | 7 cut(s) | 881, 1261, 1904, 1933, 3701, 4007, 4455 |
| MmeI | TCCRAC | 6 cut(s) | 22, 388, 394, 2363, 2732, 4686 |
| Mph1103I | ATGCAT | 3 cut(s) | 145, 2752, 3925 |
| MroI | TCCGGA | 1 cut(s) | 1768 |
| MroXI | GAANNNNTTC | 4 cut(s) | 1785, 1879, 2409, 4299 |
| MslI | CAYNNNNRTG | 7 cut(s) | 134, 558, 640, 2191, 2603, 3144, 4326 |
| MspA1I | CMGCKG | 2 cut(s) | 2740, 3419 |
| MspI | CCGG | 4 cut(s) | 1509, 1769, 2728, 4787 |
| MunI | CAATTG | 2 cut(s) | 882, 3492 |
| Mva1269I | GAATGC | 2 cut(s) | 220, 295 |
| MvnI | CGCG | 1 cut(s) | 949 |
| NciI | CCSGG | 2 cut(s) | 1509, 4788 |
| NmeAIII | GCCGAG | 1 cut(s) | 1273 |
| NmuCI | GTSAC | 3 cut(s) | 403, 1208, 2571 |
| NsiI | ATGCAT | 3 cut(s) | 145, 2752, 3925 |
| NspI | RCATGY | 4 cut(s) | 41, 199, 489, 2754 |
| OliI | CACNNNNGTG | 2 cut(s) | 2603, 4326 |
| PaeI | GCATGC | 1 cut(s) | 489 |
| PaqCI | CACCTGC | 1 cut(s) | 3218 |
| PciI | ACATGT | 1 cut(s) | 37 |
| PciSI | GCTCTTC | 1 cut(s) | 427 |
| PctI | GAATGC | 2 cut(s) | 220, 295 |
| PdmI | GAANNNNTTC | 4 cut(s) | 1785, 1879, 2409, 4299 |
| PflFI | GACNNNGTC | 1 cut(s) | 3586 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1813 |
| PfoI | TCCNGGA | 2 cut(s) | 1507, 4192 |
| PinAI | ACCGGT | 1 cut(s) | 2727 |
| PleI | GAGTC | 7 cut(s) | 880, 1260, 1903, 1932, 3701, 4006, 4455 |
| PpsI | GAGTC | 7 cut(s) | 880, 1260, 1903, 1932, 3701, 4006, 4455 |
| PpuMI | RGGWCCY | 4 cut(s) | 3002, 3610, 3849, 4424 |
| PscI | ACATGT | 1 cut(s) | 37 |
| PshBI | ATTAAT | 1 cut(s) | 834 |
| PsiI | TTATAA | 1 cut(s) | 830 |
| Psp5II | RGGWCCY | 4 cut(s) | 3002, 3610, 3849, 4424 |
| PspEI | GGTNACC | 1 cut(s) | 1208 |
| PspFI | CCCAGC | 2 cut(s) | 2247, 2740 |
| PspPPI | RGGWCCY | 4 cut(s) | 3002, 3610, 3849, 4424 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2034, 2066 |
| PstI | CTGCAG | 4 cut(s) | 3082, 3364, 3508, 4141 |
| PstNI | CAGNNNCTG | 4 cut(s) | 25, 1109, 4145, 4850 |
| PsuI | RGATCY | 7 cut(s) | 28, 645, 1097, 2125, 3602, 4108, 4687 |
| PsyI | GACNNNGTC | 1 cut(s) | 3586 |
| PvuII | CAGCTG | 2 cut(s) | 2740, 3419 |
| RsaI | GTAC | 6 cut(s) | 181, 250, 670, 1535, 2043, 4203 |
| RsaNI | GTAC | 6 cut(s) | 180, 249, 669, 1534, 2042, 4202 |
| RseI | CAYNNNNRTG | 7 cut(s) | 134, 558, 640, 2191, 2603, 3144, 4326 |
| SapI | GCTCTTC | 1 cut(s) | 427 |
| ScaI | AGTACT | 1 cut(s) | 1535 |
| SchI | GAGTC | 7 cut(s) | 881, 1261, 1904, 1933, 3701, 4007, 4455 |
| SduI | GDGCHC | 4 cut(s) | 1285, 2400, 4120, 4366 |
| SexAI | ACCWGGT | 1 cut(s) | 3912 |
| SfcI | CTRYAG | 6 cut(s) | 1543, 1890, 3078, 3360, 3504, 4137 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 134, 558, 640, 2191, 2603, 3144, 4326 |
| SmlI | CTYRAG | 8 cut(s) | 239, 1537, 2580, 3879, 3966, 3995, 4036, 4253 |
| SmoI | CTYRAG | 8 cut(s) | 239, 1537, 2580, 3879, 3966, 3995, 4036, 4253 |
| SphI | GCATGC | 1 cut(s) | 489 |
| SspI | AATATT | 2 cut(s) | 1152, 2091 |
| SspMI | CTAG | 9 cut(s) | 962, 1050, 2129, 2456, 2538, 2685, 3972, 4106, 4428 |
| StyI | CCWWGG | 6 cut(s) | 792, 1833, 2516, 2956, 3291, 4120 |
| TaiI | ACGT | 1 cut(s) | 49 |
| TaqI | TCGA | 6 cut(s) | 132, 538, 661, 1669, 1873, 2823 |
| TatI | WGTACW | 2 cut(s) | 1533, 2041 |
| TauI | GCSGC | 5 cut(s) | 80, 2865, 3833, 4408, 4709 |
| TseFI | GTSAC | 3 cut(s) | 403, 1208, 2571 |
| Tsp45I | GTSAC | 3 cut(s) | 403, 1208, 2571 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3586 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1813 |
| VspI | ATTAAT | 1 cut(s) | 834 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3672 |
| XbaI | TCTAGA | 4 cut(s) | 961, 2128, 2684, 4105 |
| XceI | RCATGY | 4 cut(s) | 41, 199, 489, 2754 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 639 |
| XmnI | GAANNNNTTC | 4 cut(s) | 1785, 1879, 2409, 4299 |
| XspI | CTAG | 9 cut(s) | 962, 1050, 2129, 2456, 2538, 2685, 3972, 4106, 4428 |
| ZrmI | AGTACT | 1 cut(s) | 1535 |
| Zsp2I | ATGCAT | 3 cut(s) | 145, 2752, 3925 |