Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8378509.1

Orthogroup ID

OG0008489

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1114

Gene Structure 1114 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8378509.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgtatggtgcagctgatggtagcagcagtgatgaggagggaacttcaaaaactaaaaggttacagattcggataagagacaagccaattgcttctaccacagtggatgttgacaagatcaaagaagccacgaagcaattcaaacttggtgaggggttggctcgccccagcagaaccaagtcattgactggatcccaggacctaagccagatgttatcccaaccgcctccagccagtagtggttttccaaatgctcgtgtaggttccgcccctggtgatctgtttggtatggatgcaccaacacaacctgcaactgtatcacagcaagctcctgtaccaggtgtgggaatgacagctggaccaattccagaggactttttccaaaataccataccgtccttccaggttgcagcctcactgccccctcctggaacctatctttcaaagatggatcaagcctctcagggggctgaaagaaatacggaaacacttaaccaggtcaatgcacccaaagccaatatagatcttcctgatggtggtgttccccctcaagctactcaacagggtgttccactggggtcctttggacttcctgatggtggggttccaccacaagccccaagccaggctgctgttcaacagacgcagattcagtcagctcaacctccaatatccactcagcctcttgatctaagtgcccttggcattccgaattctgccgataatggaaaacctacggggcagcctccttcaccaccgtctgctgtgcgtcctggacaggttccccgtggagcagccgctcctatatgctttaagactggcgtatcccaccttgagcagaatcaactttcggacgcattatcctgcttcgatgaagcttttcttgcactagcgaaggaccactctcgcggagctgatatcaaagcacaagcgaccatctgtgctcaatataagatagcagtcactcttcttcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COPI_C

Protein Analysis

325

Amino Acids

33.61

Weight (kDa)

5.47

Isoelectric Point (pI)

44.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G50590 AT3G50590
fragaria_vesca	FvH4_1g15690 FvH4_1g15690 FvH4_1g15690
malus_domestica	MD02G1168900.v1.1 MD15G1280900.v1.1
prunus_persica	Prupe.7G136400_v2.0.a1
pyrus_communis	pycom15g24420 pycom15g24430
rosa_chinensis	RchiOBHm_Chr2g0105001
rosa_laevigata	RLG00000017388
rosa_multiflora	Rmu_co8378509.1_g000001 Rmu_sc0000641.1_g000029
rosa_roxburghii	Rroxscaffold_2G00138590
rosa_rugosa	Rorug02G0124900 Rorug02G0124900
rosa_samantha	Rh2AG175300 Rh2BG183200 Rh2BG183300 Rh2CG180000 Rh2DG181700
rosa_wichuraiana	Rw2G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccBSI	CCGCTC	1 cut(s)	800
AccII	CGCG	1 cut(s)	909
AciI	CCGC	4 cut(s)	224, 267, 798, 909
AclWI	GGATC	3 cut(s)	186, 199, 459
AcsI	RAATTY	1 cut(s)	712
AcuI	CTGAAG	1 cut(s)	956
AfaI	GTAC	1 cut(s)	336
AfiI	CCNNNNNNNGG	7 cut(s)	338, 344, 428, 465, 536, 599, 625
AgsI	TTSAA	4 cut(s)	48, 142, 444, 638
AjnI	CCWGG	8 cut(s)	195, 271, 337, 402, 427, 495, 624, 772
AluBI	AGCT	7 cut(s)	14, 329, 356, 554, 659, 878, 914
AluI	AGCT	7 cut(s)	14, 329, 356, 554, 659, 878, 914
Alw21I	GWGCWC	1 cut(s)	946
Alw26I	GTCTC	1 cut(s)	72
AlwI	GGATC	3 cut(s)	186, 199, 459
ApeKI	GCWGC	6 cut(s)	11, 24, 410, 629, 742, 794
ApoI	RAATTY	1 cut(s)	712
Asp700I	GAANNNNTTC	2 cut(s)	137, 879
AspS9I	GGNCC	4 cut(s)	199, 359, 579, 898
AsuHPI	GGTGA	3 cut(s)	161, 287, 744
AvaII	GGWCC	4 cut(s)	199, 359, 579, 898
BaeGI	GKGCMC	1 cut(s)	700
BaeI	ACNNNNGTAYC	2 cut(s)	807, 840
BamHI	GGATCC	1 cut(s)	191
BauI	CACGAG	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	946
BbvI	GCAGC	6 cut(s)	23, 36, 422, 616, 754, 806
BccI	CCATC	5 cut(s)	11, 442, 527, 590, 944
BciT130I	CCWGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
BciVI	GTATCC	1 cut(s)	835
BcoDI	GTCTC	1 cut(s)	72
BfaI	CTAG	1 cut(s)	890
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	1 cut(s)	835
BglII	AGATCT	1 cut(s)	523
BisI	GCNGC	7 cut(s)	12, 25, 411, 630, 743, 795, 798
BlsI	GCNGC	7 cut(s)	13, 26, 412, 631, 744, 796, 799
Bme1390I	CCNGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
Bme18I	GGWCC	4 cut(s)	199, 359, 579, 898
BmgT120I	GGNCC	4 cut(s)	199, 359, 579, 898
BmiI	GGNNCC	6 cut(s)	193, 265, 433, 580, 606, 783
BmrFI	CCNGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	1 cut(s)	283
BmuI	ACTGGG	1 cut(s)	584
BpmI	CTGGAG	1 cut(s)	213
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	2 cut(s)	534, 854
BsaJI	CCNNGG	4 cut(s)	195, 271, 700, 787
Bsc4I	CCNNNNNNNGG	7 cut(s)	338, 344, 428, 465, 536, 599, 625
Bse1I	ACTGG	4 cut(s)	193, 234, 579, 823
BseBI	CCWGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
BseDI	CCNNGG	4 cut(s)	195, 271, 700, 787
BseGI	GGATG	2 cut(s)	112, 298
BseLI	CCNNNNNNNGG	7 cut(s)	338, 344, 428, 465, 536, 599, 625
BseMII	CTCAG	2 cut(s)	476, 692
BseNI	ACTGG	4 cut(s)	193, 234, 579, 823
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	6 cut(s)	23, 36, 422, 616, 754, 806
BseYI	CCCAGC	1 cut(s)	167
BsgI	GTGCAG	1 cut(s)	30
Bsh1236I	CGCG	1 cut(s)	909
BsiHKAI	GWGCWC	1 cut(s)	946
BslI	CCNNNNNNNGG	7 cut(s)	338, 344, 428, 465, 536, 599, 625
BsmAI	GTCTC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	705
Bsp1286I	GDGCHC	2 cut(s)	700, 946
Bsp143I	GATC	6 cut(s)	117, 191, 277, 451, 523, 688
BspACI	CCGC	4 cut(s)	224, 267, 798, 909
BspCNI	CTCAG	2 cut(s)	475, 691
BspFNI	CGCG	1 cut(s)	909
BspLI	GGNNCC	6 cut(s)	193, 265, 433, 580, 606, 783
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	3 cut(s)	186, 199, 459
BsrBI	CCGCTC	1 cut(s)	800
BsrI	ACTGG	4 cut(s)	193, 234, 579, 823
BssECI	CCNNGG	4 cut(s)	195, 271, 700, 787
BssMI	GATC	6 cut(s)	117, 191, 277, 451, 523, 688
BssSI	CACGAG	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	700
Bst2BI	CACGAG	1 cut(s)	255
Bst2UI	CCWGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
Bst4CI	ACNGT	4 cut(s)	103, 316, 396, 759
Bst6I	CTCTTC	1 cut(s)	972
BstC8I	GCNNGC	2 cut(s)	163, 327
BstDEI	CTNAG	4 cut(s)	203, 462, 678, 692
BstDSI	CCRYGG	1 cut(s)	787
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	112, 298
BstFNI	CGCG	1 cut(s)	909
BstKTI	GATC	6 cut(s)	120, 194, 280, 454, 526, 691
BstMAI	GTCTC	1 cut(s)	72
BstMBI	GATC	6 cut(s)	117, 191, 277, 451, 523, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	512, 884
BstNI	CCWGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
BstSCI	CCNGG	8 cut(s)	195, 271, 337, 402, 427, 495, 624, 772
BstSLI	GKGCMC	1 cut(s)	700
BstUI	CGCG	1 cut(s)	909
BstV1I	GCAGC	6 cut(s)	23, 36, 422, 616, 754, 806
BstX2I	RGATCY	2 cut(s)	191, 523
BstYI	RGATCY	2 cut(s)	191, 523
BsuI	GTATCC	1 cut(s)	835
BtgI	CCRYGG	1 cut(s)	787
BtsCI	GGATG	2 cut(s)	112, 298
BtsI	GCAGTG	2 cut(s)	34, 416
BtsIMutI	CAGTG	4 cut(s)	34, 108, 416, 572
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	163, 327
Cfr13I	GGNCC	4 cut(s)	199, 359, 579, 898
CseI	GACGC	3 cut(s)	652, 758, 863
CsiI	ACCWGGT	2 cut(s)	337, 495
Csp6I	GTAC	1 cut(s)	335
CviQI	GTAC	1 cut(s)	335
DdeI	CTNAG	4 cut(s)	203, 462, 678, 692
DpnI	GATC	6 cut(s)	119, 193, 279, 453, 525, 690
DpnII	GATC	6 cut(s)	117, 191, 277, 451, 523, 688
Eam1104I	CTCTTC	1 cut(s)	972
EarI	CTCTTC	1 cut(s)	972
EciI	GGCGGA	1 cut(s)	256
Eco130I	CCWWGG	1 cut(s)	700
Eco32I	GATATC	1 cut(s)	919
Eco47I	GGWCC	4 cut(s)	199, 359, 579, 898
Eco57I	CTGAAG	1 cut(s)	956
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoO109I	RGGNCCY	2 cut(s)	199, 579
EcoRI	GAATTC	1 cut(s)	712
EcoRII	CCWGG	8 cut(s)	195, 271, 337, 402, 427, 495, 624, 772
EcoRV	GATATC	1 cut(s)	919
EcoT14I	CCWWGG	1 cut(s)	700
ErhI	CCWWGG	1 cut(s)	700
FaiI	YATR	7 cut(s)	6, 290, 392, 521, 806, 808, 951
FalI	AAGNNNNNCTT	2 cut(s)	867, 899
Fnu4HI	GCNGC	7 cut(s)	12, 25, 411, 630, 743, 795, 798
FokI	GGATG	2 cut(s)	119, 305
Fsp4HI	GCNGC	7 cut(s)	12, 25, 411, 630, 743, 795, 798
FspBI	CTAG	1 cut(s)	890
GluI	GCNGC	7 cut(s)	12, 25, 411, 630, 743, 795, 798
GsaI	CCCAGC	1 cut(s)	171
GsuI	CTGGAG	1 cut(s)	213
HgaI	GACGC	3 cut(s)	652, 758, 863
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HindIII	AAGCTT	1 cut(s)	876
HinfI	GANTC	3 cut(s)	67, 649, 841
HphI	GGTGA	3 cut(s)	161, 287, 744
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	3 cut(s)	72, 711, 853
Hpy188III	TCNNGA	4 cut(s)	368, 530, 593, 686
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	3 cut(s)	409, 759, 889
HpyCH4III	ACNGT	4 cut(s)	103, 316, 396, 759
HpyCH4V	TGCA	6 cut(s)	11, 296, 311, 410, 506, 887
HpyF10VI	GCNNNNNNNGC	2 cut(s)	512, 884
HpyF3I	CTNAG	4 cut(s)	203, 462, 678, 692
Kzo9I	GATC	6 cut(s)	117, 191, 277, 451, 523, 688
LmnI	GCTCC	4 cut(s)	334, 791, 805, 911
Lsp1109I	GCAGC	6 cut(s)	23, 36, 422, 616, 754, 806
LweI	GCATC	1 cut(s)	283
MabI	ACCWGGT	2 cut(s)	337, 495
MaeI	CTAG	1 cut(s)	890
MaeIII	GTNAC	2 cut(s)	60, 961
MalI	GATC	6 cut(s)	119, 193, 279, 453, 525, 690
MbiI	CCGCTC	1 cut(s)	800
MboI	GATC	6 cut(s)	117, 191, 277, 451, 523, 688
MboII	GAAGA	3 cut(s)	518, 959, 962
MfeI	CAATTG	1 cut(s)	87
MflI	RGATCY	2 cut(s)	191, 523
MhlI	GDGCHC	2 cut(s)	700, 946
MluCI	AATT	4 cut(s)	87, 137, 363, 712
MroXI	GAANNNNTTC	2 cut(s)	137, 879
MseI	TTAA	2 cut(s)	492, 813
MspA1I	CMGCKG	2 cut(s)	14, 356
MspR9I	CCNGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
MunI	CAATTG	1 cut(s)	87
Mva1269I	GAATGC	1 cut(s)	705
MvaI	CCWGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
MvnI	CGCG	1 cut(s)	909
MwoI	GCNNNNNNNGC	2 cut(s)	512, 884
NdeII	GATC	6 cut(s)	117, 191, 277, 451, 523, 688
NlaIV	GGNNCC	6 cut(s)	193, 265, 433, 580, 606, 783
NmuCI	GTSAC	1 cut(s)	961
PctI	GAATGC	1 cut(s)	705
PdmI	GAANNNNTTC	2 cut(s)	137, 879
PfeI	GAWTC	3 cut(s)	67, 649, 841
PfoI	TCCNGGA	2 cut(s)	427, 772
PkrI	GCNGC	7 cut(s)	13, 26, 412, 631, 744, 796, 799
PpuMI	RGGWCCY	2 cut(s)	199, 579
Psp5II	RGGWCCY	2 cut(s)	199, 579
Psp6I	CCWGG	8 cut(s)	195, 271, 337, 402, 427, 495, 624, 772
PspFI	CCCAGC	1 cut(s)	167
PspGI	CCWGG	8 cut(s)	195, 271, 337, 402, 427, 495, 624, 772
PspN4I	GGNNCC	6 cut(s)	193, 265, 433, 580, 606, 783
PspPI	GGNCC	4 cut(s)	199, 359, 579, 898
PspPPI	RGGWCCY	2 cut(s)	199, 579
PsuI	RGATCY	2 cut(s)	191, 523
PvuII	CAGCTG	2 cut(s)	14, 356
RsaI	GTAC	1 cut(s)	336
RsaNI	GTAC	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	492, 813
SatI	GCNGC	7 cut(s)	12, 25, 411, 630, 743, 795, 798
Sau3AI	GATC	6 cut(s)	117, 191, 277, 451, 523, 688
Sau96I	GGNCC	4 cut(s)	199, 359, 579, 898
ScrFI	CCNGG	8 cut(s)	197, 273, 339, 404, 429, 497, 626, 774
SduI	GDGCHC	2 cut(s)	700, 946
SexAI	ACCWGGT	2 cut(s)	337, 495
SfaNI	GCATC	1 cut(s)	283
SinI	GGWCC	4 cut(s)	199, 359, 579, 898
SmlI	CTYRAG	2 cut(s)	549, 833
SmoI	CTYRAG	2 cut(s)	549, 833
Sse9I	AATT	4 cut(s)	87, 137, 363, 712
SsiI	CCGC	4 cut(s)	224, 267, 798, 909
SspMI	CTAG	1 cut(s)	890
StyD4I	CCNGG	8 cut(s)	195, 271, 337, 402, 427, 495, 624, 772
StyI	CCWWGG	1 cut(s)	700
TaaI	ACNGT	4 cut(s)	103, 316, 396, 759
TaqI	TCGA	1 cut(s)	870
TasI	AATT	4 cut(s)	87, 137, 363, 712
TauI	GCSGC	1 cut(s)	800
TfiI	GAWTC	3 cut(s)	67, 649, 841
Tru1I	TTAA	2 cut(s)	492, 813
Tru9I	TTAA	2 cut(s)	492, 813
TscAI	CASTG	4 cut(s)	34, 108, 423, 579
TseFI	GTSAC	1 cut(s)	961
TseI	GCWGC	6 cut(s)	11, 24, 410, 629, 742, 794
Tsp45I	GTSAC	1 cut(s)	961
TspDTI	ATGAA	1 cut(s)	888
TspGWI	ACGGA	1 cut(s)	497
TspRI	CASTG	4 cut(s)	34, 108, 423, 579
VpaK11BI	GGWCC	4 cut(s)	199, 359, 579, 898
XagI	CCTNNNNNAGG	1 cut(s)	336
XapI	RAATTY	1 cut(s)	712
XmnI	GAANNNNTTC	2 cut(s)	137, 879
XspI	CTAG	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.