WD40 repeats
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G50590 AT3G50590 |
| fragaria_vesca | FvH4_1g15690 FvH4_1g15690 FvH4_1g15690 |
| malus_domestica | MD02G1168900.v1.1 MD15G1280900.v1.1 |
| prunus_persica | Prupe.7G136400_v2.0.a1 |
| pyrus_communis | pycom15g24420 pycom15g24430 |
| rosa_chinensis | RchiOBHm_Chr2g0105001 |
| rosa_laevigata | RLG00000017388 |
| rosa_multiflora | Rmu_co8378509.1_g000001 Rmu_sc0000641.1_g000029 |
| rosa_roxburghii | Rroxscaffold_2G00138590 |
| rosa_rugosa | Rorug02G0124900 Rorug02G0124900 |
| rosa_samantha | Rh2AG175300 Rh2BG183200 Rh2BG183300 Rh2CG180000 Rh2DG181700 |
| rosa_wichuraiana | Rw2G013780 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 830 |
| AarI | CACCTGC | 1 cut(s) | 3194 |
| Acc36I | ACCTGC | 4 cut(s) | 883, 2445, 3194, 3697 |
| AccB1I | GGYRCC | 3 cut(s) | 50, 436, 3089 |
| AccBSI | CCGCTC | 1 cut(s) | 4181 |
| AccI | GTMKAC | 1 cut(s) | 181 |
| AccII | CGCG | 4 cut(s) | 44, 46, 949, 4290 |
| AcoI | YGGCCR | 4 cut(s) | 217, 2511, 4363, 4668 |
| AcuI | CTGAAG | 8 cut(s) | 732, 1355, 1366, 2033, 3225, 3381, 4337, 4355 |
| AcvI | CACGTG | 1 cut(s) | 824 |
| AcyI | GRCGYC | 1 cut(s) | 2839 |
| AfaI | GTAC | 5 cut(s) | 250, 670, 1535, 2046, 3717 |
| AfeI | AGCGCT | 1 cut(s) | 993 |
| AflII | CTTAAG | 1 cut(s) | 2905 |
| AflIII | ACRYGT | 4 cut(s) | 37, 821, 823, 4599 |
| AgeI | ACCGGT | 1 cut(s) | 2295 |
| AjiI | CACGTC | 1 cut(s) | 40 |
| Alw21I | GWGCWC | 1 cut(s) | 4327 |
| Alw26I | GTCTC | 8 cut(s) | 694, 1014, 1467, 1483, 2502, 2551, 2756, 3453 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1109 |
| Ama87I | CYCGRG | 1 cut(s) | 1836 |
| Aor51HI | AGCGCT | 1 cut(s) | 993 |
| AoxI | GGCC | 9 cut(s) | 96, 217, 1038, 2511, 4363, 4384, 4668, 4802, 4808 |
| AseI | ATTAAT | 1 cut(s) | 834 |
| AsiGI | ACCGGT | 1 cut(s) | 2295 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 1785, 1882, 2385, 3518, 4260 |
| AspLEI | GCGC | 6 cut(s) | 46, 994, 1560, 2287, 2658, 2916 |
| AsuC2I | CCSGG | 2 cut(s) | 1755, 4806 |
| AsuHPI | GGTGA | 8 cut(s) | 291, 620, 668, 3073, 3221, 3542, 3668, 4125 |
| AsuII | TTCGAA | 1 cut(s) | 4480 |
| AvaI | CYCGRG | 1 cut(s) | 1836 |
| AvaII | GGWCC | 8 cut(s) | 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279 |
| BaeGI | GKGCMC | 5 cut(s) | 53, 439, 1206, 1285, 4081 |
| BaeI | ACNNNNGTAYC | 4 cut(s) | 324, 357, 4188, 4221 |
| BalI | TGGCCA | 2 cut(s) | 219, 2513 |
| BamHI | GGATCC | 2 cut(s) | 1097, 3572 |
| BanI | GGYRCC | 3 cut(s) | 50, 436, 3089 |
| BauI | CACGAG | 2 cut(s) | 211, 3636 |
| BbrPI | CACGTG | 1 cut(s) | 824 |
| BbsI | GAAGAC | 3 cut(s) | 824, 3221, 4653 |
| Bbv12I | GWGCWC | 1 cut(s) | 4327 |
| BbvCI | CCTCAGC | 2 cut(s) | 1102, 3057 |
| BceAI | ACGGC | 4 cut(s) | 92, 1571, 4665, 4807 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 109, 122, 143, 156 |
| BciVI | GTATCC | 3 cut(s) | 1952, 4216, 4691 |
| BclI | TGATCA | 1 cut(s) | 3112 |
| BcnI | CCSGG | 2 cut(s) | 1755, 4806 |
| BcoDI | GTCTC | 8 cut(s) | 694, 1014, 1467, 1483, 2502, 2551, 2756, 3453 |
| BfaI | CTAG | 7 cut(s) | 705, 1050, 2132, 2661, 4271, 4389, 4424 |
| BfmI | CTRYAG | 2 cut(s) | 369, 1543 |
| BfoI | RGCGCY | 1 cut(s) | 995 |
| BfrI | CTTAAG | 1 cut(s) | 2905 |
| BfuAI | ACCTGC | 4 cut(s) | 883, 2445, 3194, 3697 |
| BfuI | GTATCC | 3 cut(s) | 1952, 4216, 4691 |
| BglII | AGATCT | 3 cut(s) | 2128, 2536, 3904 |
| Bme18I | GGWCC | 8 cut(s) | 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279 |
| BmeT110I | CYCGRG | 1 cut(s) | 1836 |
| BmgBI | CACGTC | 1 cut(s) | 40 |
| BmrI | ACTGGG | 4 cut(s) | 2820, 3010, 3965, 4651 |
| BmuI | ACTGGG | 4 cut(s) | 2820, 3010, 3965, 4651 |
| BpiI | GAAGAC | 3 cut(s) | 824, 3221, 4653 |
| BpmI | CTGGAG | 4 cut(s) | 47, 1388, 1752, 3594 |
| Bpu10I | CCTNAGC | 4 cut(s) | 1102, 3057, 3584, 4583 |
| Bpu14I | TTCGAA | 1 cut(s) | 4480 |
| BpuEI | CTTGAG | 4 cut(s) | 2541, 2916, 3915, 4235 |
| BpuMI | CCSGG | 2 cut(s) | 1755, 4806 |
| BsaAI | YACGTR | 1 cut(s) | 824 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1698 |
| BsaHI | GRCGYC | 1 cut(s) | 2839 |
| BsaI | GGTCTC | 3 cut(s) | 694, 2502, 2756 |
| BsaWI | WCCGGW | 1 cut(s) | 2295 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1011, 1041, 2878, 2908 |
| Bse118I | RCCGGY | 2 cut(s) | 2295, 4365 |
| Bse3DI | GCAATG | 1 cut(s) | 1227 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1698 |
| BseJI | GATNNNNATC | 1 cut(s) | 1698 |
| BseMI | GCAATG | 1 cut(s) | 1227 |
| BseRI | GAGGAG | 2 cut(s) | 2899, 3431 |
| BseSI | GKGCMC | 5 cut(s) | 53, 439, 1206, 1285, 4081 |
| BseYI | CCCAGC | 1 cut(s) | 3548 |
| BsgI | GTGCAG | 2 cut(s) | 38, 3411 |
| Bsh1236I | CGCG | 4 cut(s) | 44, 46, 949, 4290 |
| BshFI | GGCC | 9 cut(s) | 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810 |
| BshNI | GGYRCC | 3 cut(s) | 50, 436, 3089 |
| BshTI | ACCGGT | 1 cut(s) | 2295 |
| BsiHKAI | GWGCWC | 1 cut(s) | 4327 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1836 |
| BsiSI | CCGG | 5 cut(s) | 1755, 2296, 2710, 4366, 4805 |
| BslFI | GGGAC | 2 cut(s) | 192, 430 |
| BsmAI | GTCTC | 8 cut(s) | 694, 1014, 1467, 1483, 2502, 2551, 2756, 3453 |
| BsmFI | GGGAC | 2 cut(s) | 192, 430 |
| BsmI | GAATGC | 2 cut(s) | 295, 4086 |
| BsnI | GGCC | 9 cut(s) | 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810 |
| Bso31I | GGTCTC | 3 cut(s) | 694, 2502, 2756 |
| BsoBI | CYCGRG | 1 cut(s) | 1836 |
| Bsp119I | TTCGAA | 1 cut(s) | 4480 |
| Bsp1286I | GDGCHC | 6 cut(s) | 53, 439, 1206, 1285, 4081, 4327 |
| Bsp19I | CCATGG | 1 cut(s) | 4381 |
| BspANI | GGCC | 9 cut(s) | 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810 |
| BspFNI | CGCG | 4 cut(s) | 44, 46, 949, 4290 |
| BspMI | ACCTGC | 4 cut(s) | 883, 2445, 3194, 3697 |
| BspT104I | TTCGAA | 1 cut(s) | 4480 |
| BspT107I | GGYRCC | 3 cut(s) | 50, 436, 3089 |
| BspTI | CTTAAG | 1 cut(s) | 2905 |
| BspTNI | GGTCTC | 3 cut(s) | 694, 2502, 2756 |
| BsrBI | CCGCTC | 1 cut(s) | 4181 |
| BsrDI | GCAATG | 1 cut(s) | 1227 |
| BsrFI | RCCGGY | 2 cut(s) | 2295, 4365 |
| BssAI | RCCGGY | 2 cut(s) | 2295, 4365 |
| BssNAI | GTATAC | 1 cut(s) | 182 |
| BssNI | GRCGYC | 1 cut(s) | 2839 |
| BssSI | CACGAG | 2 cut(s) | 211, 3636 |
| BssT1I | CCWWGG | 5 cut(s) | 2492, 2672, 3267, 4081, 4381 |
| Bst1107I | GTATAC | 1 cut(s) | 182 |
| Bst2BI | CACGAG | 2 cut(s) | 211, 3636 |
| Bst6I | CTCTTC | 5 cut(s) | 810, 2391, 3244, 4353, 4455 |
| BstACI | GRCGYC | 1 cut(s) | 2839 |
| BstAFI | CTTAAG | 1 cut(s) | 2905 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 4400, 4761 |
| BstBAI | YACGTR | 1 cut(s) | 824 |
| BstBI | TTCGAA | 1 cut(s) | 4480 |
| BstC8I | GCNNGC | 8 cut(s) | 487, 858, 2307, 2480, 3544, 3708, 4367, 4429 |
| BstDSI | CCRYGG | 2 cut(s) | 4168, 4381 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3717 |
| BstFNI | CGCG | 4 cut(s) | 44, 46, 949, 4290 |
| BstH2I | RGCGCY | 1 cut(s) | 995 |
| BstHHI | GCGC | 6 cut(s) | 46, 994, 1560, 2287, 2658, 2916 |
| BstMAI | GTCTC | 8 cut(s) | 694, 1014, 1467, 1483, 2502, 2551, 2756, 3453 |
| BstNSI | RCATGY | 3 cut(s) | 489, 2730, 4603 |
| BstSFI | CTRYAG | 2 cut(s) | 369, 1543 |
| BstSLI | GKGCMC | 5 cut(s) | 53, 439, 1206, 1285, 4081 |
| BstUI | CGCG | 4 cut(s) | 44, 46, 949, 4290 |
| BstV2I | GAAGAC | 3 cut(s) | 824, 3221, 4653 |
| BstX2I | RGATCY | 6 cut(s) | 1097, 2128, 2536, 2901, 3572, 3904 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 245 |
| BstYI | RGATCY | 6 cut(s) | 1097, 2128, 2536, 2901, 3572, 3904 |
| BstZ17I | GTATAC | 1 cut(s) | 182 |
| BsuI | GTATCC | 3 cut(s) | 1952, 4216, 4691 |
| BsuRI | GGCC | 9 cut(s) | 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810 |
| BtgI | CCRYGG | 2 cut(s) | 4168, 4381 |
| BtrI | CACGTC | 1 cut(s) | 40 |
| BtsI | GCAGTG | 2 cut(s) | 3415, 3797 |
| BtsIMutI | CAGTG | 8 cut(s) | 2056, 2833, 2868, 3249, 3415, 3489, 3797, 3953 |
| BveI | ACCTGC | 4 cut(s) | 883, 2445, 3194, 3697 |
| Cac8I | GCNNGC | 8 cut(s) | 487, 858, 2307, 2480, 3544, 3708, 4367, 4429 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1109 |
| CfoI | GCGC | 6 cut(s) | 46, 994, 1560, 2287, 2658, 2916 |
| Cfr10I | RCCGGY | 2 cut(s) | 2295, 4365 |
| CseI | GACGC | 5 cut(s) | 1095, 2828, 4033, 4139, 4244 |
| CsiI | ACCWGGT | 2 cut(s) | 3718, 3876 |
| Csp6I | GTAC | 5 cut(s) | 249, 669, 1534, 2045, 3716 |
| CspAI | ACCGGT | 1 cut(s) | 2295 |
| CviQI | GTAC | 5 cut(s) | 249, 669, 1534, 2045, 3716 |
| DraI | TTTAAA | 1 cut(s) | 2640 |
| EaeI | YGGCCR | 4 cut(s) | 217, 2511, 4363, 4668 |
| Eam1104I | CTCTTC | 5 cut(s) | 810, 2391, 3244, 4353, 4455 |
| EarI | CTCTTC | 5 cut(s) | 810, 2391, 3244, 4353, 4455 |
| EciI | GGCGGA | 1 cut(s) | 3637 |
| Eco130I | CCWWGG | 5 cut(s) | 2492, 2672, 3267, 4081, 4381 |
| Eco31I | GGTCTC | 3 cut(s) | 694, 2502, 2756 |
| Eco32I | GATATC | 2 cut(s) | 175, 4300 |
| Eco47I | GGWCC | 8 cut(s) | 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279 |
| Eco47III | AGCGCT | 1 cut(s) | 993 |
| Eco57I | CTGAAG | 8 cut(s) | 732, 1355, 1366, 2033, 3225, 3381, 4337, 4355 |
| Eco72I | CACGTG | 1 cut(s) | 824 |
| Eco88I | CYCGRG | 1 cut(s) | 1836 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3717 |
| EcoO109I | RGGNCCY | 5 cut(s) | 97, 2978, 3580, 3960, 4808 |
| EcoRI | GAATTC | 1 cut(s) | 4093 |
| EcoRV | GATATC | 2 cut(s) | 175, 4300 |
| EcoT14I | CCWWGG | 5 cut(s) | 2492, 2672, 3267, 4081, 4381 |
| EcoT22I | ATGCAT | 1 cut(s) | 2728 |
| ErhI | CCWWGG | 5 cut(s) | 2492, 2672, 3267, 4081, 4381 |
| FaqI | GGGAC | 2 cut(s) | 192, 430 |
| FauI | CCCGC | 2 cut(s) | 39, 3208 |
| FauNDI | CATATG | 1 cut(s) | 1194 |
| FbaI | TGATCA | 1 cut(s) | 3112 |
| FblI | GTMKAC | 1 cut(s) | 181 |
| FspBI | CTAG | 7 cut(s) | 705, 1050, 2132, 2661, 4271, 4389, 4424 |
| GlaI | GCGC | 6 cut(s) | 45, 993, 1559, 2286, 2657, 2915 |
| GsaI | CCCAGC | 1 cut(s) | 3552 |
| GsuI | CTGGAG | 4 cut(s) | 47, 1388, 1752, 3594 |
| HaeII | RGCGCY | 1 cut(s) | 995 |
| HaeIII | GGCC | 9 cut(s) | 98, 219, 1040, 2513, 4365, 4386, 4670, 4804, 4810 |
| HapII | CCGG | 5 cut(s) | 1755, 2296, 2710, 4366, 4805 |
| HgaI | GACGC | 5 cut(s) | 1095, 2828, 4033, 4139, 4244 |
| HhaI | GCGC | 6 cut(s) | 46, 994, 1560, 2287, 2658, 2916 |
| Hin1I | GRCGYC | 1 cut(s) | 2839 |
| Hin6I | GCGC | 6 cut(s) | 44, 992, 1558, 2285, 2656, 2914 |
| HinP1I | GCGC | 6 cut(s) | 44, 992, 1558, 2285, 2656, 2914 |
| HincII | GTYRAC | 5 cut(s) | 147, 1902, 3493, 4597, 4689 |
| HindII | GTYRAC | 5 cut(s) | 147, 1902, 3493, 4597, 4689 |
| HindIII | AAGCTT | 5 cut(s) | 599, 1124, 2429, 3189, 4257 |
| HpaII | CCGG | 5 cut(s) | 1755, 2296, 2710, 4366, 4805 |
| HphI | GGTGA | 8 cut(s) | 291, 620, 668, 3073, 3221, 3542, 3668, 4125 |
| Hpy99I | CGWCG | 5 cut(s) | 16, 44, 107, 113, 134 |
| HpyCH4IV | ACGT | 2 cut(s) | 39, 823 |
| HpySE526I | ACGT | 2 cut(s) | 39, 823 |
| Hsp92I | GRCGYC | 1 cut(s) | 2839 |
| HspAI | GCGC | 6 cut(s) | 44, 992, 1558, 2285, 2656, 2914 |
| KroI | GCCGGC | 1 cut(s) | 4365 |
| KroNI | GCCGGC | 1 cut(s) | 4367 |
| Ksp22I | TGATCA | 1 cut(s) | 3112 |
| LmnI | GCTCC | 9 cut(s) | 263, 1348, 1369, 1469, 3715, 4172, 4186, 4292, 4587 |
| MabI | ACCWGGT | 2 cut(s) | 3718, 3876 |
| MaeI | CTAG | 7 cut(s) | 705, 1050, 2132, 2661, 4271, 4389, 4424 |
| MaeII | ACGT | 2 cut(s) | 39, 823 |
| MaeIII | GTNAC | 8 cut(s) | 403, 774, 781, 787, 3244, 3441, 4342, 4709 |
| MbiI | CCGCTC | 1 cut(s) | 4181 |
| MfeI | CAATTG | 2 cut(s) | 882, 3468 |
| MflI | RGATCY | 6 cut(s) | 1097, 2128, 2536, 2901, 3572, 3904 |
| MhlI | GDGCHC | 6 cut(s) | 53, 439, 1206, 1285, 4081, 4327 |
| MlsI | TGGCCA | 2 cut(s) | 219, 2513 |
| MluNI | TGGCCA | 2 cut(s) | 219, 2513 |
| MlyI | GAGTC | 4 cut(s) | 1907, 2923, 3230, 4386 |
| MmeI | TCCRAC | 4 cut(s) | 294, 388, 2708, 4647 |
| Mox20I | TGGCCA | 2 cut(s) | 219, 2513 |
| Mph1103I | ATGCAT | 1 cut(s) | 2728 |
| MroNI | GCCGGC | 1 cut(s) | 4365 |
| MroXI | GAANNNNTTC | 5 cut(s) | 1785, 1882, 2385, 3518, 4260 |
| MscI | TGGCCA | 2 cut(s) | 219, 2513 |
| MslI | CAYNNNNRTG | 6 cut(s) | 243, 558, 640, 1007, 2201, 3120 |
| Msp20I | TGGCCA | 2 cut(s) | 219, 2513 |
| MspA1I | CMGCKG | 2 cut(s) | 3395, 3737 |
| MspCI | CTTAAG | 1 cut(s) | 2905 |
| MspI | CCGG | 5 cut(s) | 1755, 2296, 2710, 4366, 4805 |
| MunI | CAATTG | 2 cut(s) | 882, 3468 |
| Mva1269I | GAATGC | 2 cut(s) | 295, 4086 |
| MvnI | CGCG | 4 cut(s) | 44, 46, 949, 4290 |
| NaeI | GCCGGC | 1 cut(s) | 4367 |
| NciI | CCSGG | 2 cut(s) | 1755, 4806 |
| NcoI | CCATGG | 1 cut(s) | 4381 |
| NdeI | CATATG | 1 cut(s) | 1194 |
| NgoMIV | GCCGGC | 1 cut(s) | 4365 |
| NmeAIII | GCCGAG | 1 cut(s) | 1273 |
| NmuCI | GTSAC | 3 cut(s) | 3244, 4342, 4709 |
| NsiI | ATGCAT | 1 cut(s) | 2728 |
| NspI | RCATGY | 3 cut(s) | 489, 2730, 4603 |
| NspV | TTCGAA | 1 cut(s) | 4480 |
| PaeI | GCATGC | 1 cut(s) | 489 |
| PaqCI | CACCTGC | 1 cut(s) | 3194 |
| PciI | ACATGT | 1 cut(s) | 4599 |
| PctI | GAATGC | 2 cut(s) | 295, 4086 |
| PdiI | GCCGGC | 1 cut(s) | 4367 |
| PdmI | GAANNNNTTC | 5 cut(s) | 1785, 1882, 2385, 3518, 4260 |
| PfoI | TCCNGGA | 2 cut(s) | 3808, 4153 |
| PinAI | ACCGGT | 1 cut(s) | 2295 |
| PleI | GAGTC | 4 cut(s) | 1906, 2923, 3230, 4385 |
| PmaCI | CACGTG | 1 cut(s) | 824 |
| PmlI | CACGTG | 1 cut(s) | 824 |
| PpsI | GAGTC | 4 cut(s) | 1906, 2923, 3230, 4385 |
| Ppu21I | YACGTR | 1 cut(s) | 824 |
| PpuMI | RGGWCCY | 3 cut(s) | 2978, 3580, 3960 |
| PscI | ACATGT | 1 cut(s) | 4599 |
| PshBI | ATTAAT | 1 cut(s) | 834 |
| PsiI | TTATAA | 1 cut(s) | 830 |
| Psp5II | RGGWCCY | 3 cut(s) | 2978, 3580, 3960 |
| PspCI | CACGTG | 1 cut(s) | 824 |
| PspFI | CCCAGC | 1 cut(s) | 3548 |
| PspPPI | RGGWCCY | 3 cut(s) | 2978, 3580, 3960 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2037, 2069 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1109 |
| PsuI | RGATCY | 6 cut(s) | 1097, 2128, 2536, 2901, 3572, 3904 |
| PvuII | CAGCTG | 2 cut(s) | 3395, 3737 |
| RsaI | GTAC | 5 cut(s) | 250, 670, 1535, 2046, 3717 |
| RsaNI | GTAC | 5 cut(s) | 249, 669, 1534, 2045, 3716 |
| RseI | CAYNNNNRTG | 6 cut(s) | 243, 558, 640, 1007, 2201, 3120 |
| SchI | GAGTC | 4 cut(s) | 1907, 2923, 3230, 4386 |
| SduI | GDGCHC | 6 cut(s) | 53, 439, 1206, 1285, 4081, 4327 |
| SexAI | ACCWGGT | 2 cut(s) | 3718, 3876 |
| SfcI | CTRYAG | 2 cut(s) | 369, 1543 |
| SfuI | TTCGAA | 1 cut(s) | 4480 |
| SinI | GGWCC | 8 cut(s) | 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 243, 558, 640, 1007, 2201, 3120 |
| SmlI | CTYRAG | 5 cut(s) | 2556, 2905, 2931, 3930, 4214 |
| SmoI | CTYRAG | 5 cut(s) | 2556, 2905, 2931, 3930, 4214 |
| SphI | GCATGC | 1 cut(s) | 489 |
| SspI | AATATT | 2 cut(s) | 1152, 2094 |
| SspMI | CTAG | 7 cut(s) | 705, 1050, 2132, 2661, 4271, 4389, 4424 |
| StyI | CCWWGG | 5 cut(s) | 2492, 2672, 3267, 4081, 4381 |
| TaiI | ACGT | 2 cut(s) | 42, 826 |
| TaqI | TCGA | 9 cut(s) | 27, 132, 538, 585, 1669, 1876, 2799, 4251, 4480 |
| TatI | WGTACW | 1 cut(s) | 2044 |
| TauI | GCSGC | 6 cut(s) | 77, 80, 1043, 2839, 4181, 4670 |
| TscAI | CASTG | 8 cut(s) | 2063, 2833, 2875, 3249, 3415, 3489, 3804, 3960 |
| TseFI | GTSAC | 3 cut(s) | 3244, 4342, 4709 |
| Tsp45I | GTSAC | 3 cut(s) | 3244, 4342, 4709 |
| TspGWI | ACGGA | 1 cut(s) | 3878 |
| TspRI | CASTG | 8 cut(s) | 2063, 2833, 2875, 3249, 3415, 3489, 3804, 3960 |
| Vha464I | CTTAAG | 1 cut(s) | 2905 |
| VpaK11BI | GGWCC | 8 cut(s) | 1688, 1841, 2564, 2978, 3580, 3740, 3960, 4279 |
| VspI | ATTAAT | 1 cut(s) | 834 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3717 |
| XbaI | TCTAGA | 2 cut(s) | 2131, 2660 |
| XceI | RCATGY | 3 cut(s) | 489, 2730, 4603 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 639, 982 |
| XmiI | GTMKAC | 1 cut(s) | 181 |
| XmnI | GAANNNNTTC | 5 cut(s) | 1785, 1882, 2385, 3518, 4260 |
| XspI | CTAG | 7 cut(s) | 705, 1050, 2132, 2661, 4271, 4389, 4424 |
| Zsp2I | ATGCAT | 1 cut(s) | 2728 |