subtilisin-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G05920 |
| fragaria_vesca | FvH4_1g08840 |
| malus_domestica | MD02G1093500.v1.1 MD15G1218800.v1.1 |
| prunus_persica | Prupe.7G197100_v2.0.a1 |
| pyrus_communis | pycom02g07370 pycom15g19400 |
| rosa_chinensis | RchiOBHm_Chr2g0095311 |
| rosa_laevigata | RLG00000016553 |
| rosa_multiflora | Rmu_ssc0000183.1_g000049 |
| rosa_roxburghii | Rroxscaffold_2G00146490 |
| rosa_rugosa | Rorug02G0049200 |
| rosa_samantha | Rh2AG097600 Rh2BG098800 Rh2CG100900 Rh2DG098500 |
| rosa_wichuraiana | Rw2G007360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 3 cut(s) | 404, 425, 2203 |
| AatII | GACGTC | 1 cut(s) | 402 |
| AccB1I | GGYRCC | 1 cut(s) | 733 |
| AccI | GTMKAC | 3 cut(s) | 279, 834, 1848 |
| AccIII | TCCGGA | 1 cut(s) | 1681 |
| AclI | AACGTT | 2 cut(s) | 1063, 1938 |
| AclWI | GGATC | 3 cut(s) | 466, 819, 1001 |
| AcsI | RAATTY | 1 cut(s) | 2210 |
| AcvI | CACGTG | 2 cut(s) | 682, 1232 |
| AcyI | GRCGYC | 5 cut(s) | 399, 426, 734, 831, 1764 |
| AdeI | CACNNNGTG | 1 cut(s) | 2248 |
| AfaI | GTAC | 9 cut(s) | 140, 758, 875, 1085, 1191, 1254, 1443, 1624, 2159 |
| AflIII | ACRYGT | 4 cut(s) | 50, 837, 1231, 1909 |
| AgeI | ACCGGT | 1 cut(s) | 1111 |
| AgsI | TTSAA | 8 cut(s) | 1178, 1510, 1583, 1609, 1817, 1907, 2134, 2220 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 841 |
| AjiI | CACGTC | 1 cut(s) | 838 |
| AjnI | CCWGG | 6 cut(s) | 372, 384, 1528, 1542, 1966, 2244 |
| AleI | CACNNNNGTG | 4 cut(s) | 1073, 1191, 1647, 2171 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 86, 118 |
| AluBI | AGCT | 7 cut(s) | 447, 541, 551, 558, 594, 1146, 1419 |
| AluI | AGCT | 7 cut(s) | 447, 541, 551, 558, 594, 1146, 1419 |
| Alw21I | GWGCWC | 4 cut(s) | 273, 553, 776, 1188 |
| Alw26I | GTCTC | 3 cut(s) | 338, 630, 937 |
| AlwI | GGATC | 3 cut(s) | 466, 819, 1001 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1967 |
| Ama87I | CYCGRG | 5 cut(s) | 272, 320, 335, 434, 467 |
| Aor13HI | TCCGGA | 1 cut(s) | 1681 |
| ApaI | GGGCCC | 1 cut(s) | 1572 |
| ApeKI | GCWGC | 5 cut(s) | 29, 660, 1658, 1673, 2054 |
| ApoI | RAATTY | 1 cut(s) | 2210 |
| AsiGI | ACCGGT | 1 cut(s) | 1111 |
| AsiSI | GCGATCGC | 1 cut(s) | 1216 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1957 |
| AspLEI | GCGC | 4 cut(s) | 489, 724, 736, 902 |
| AsuHPI | GGTGA | 7 cut(s) | 508, 1316, 1376, 1504, 2110, 2122, 2260 |
| AsuII | TTCGAA | 2 cut(s) | 1397, 1784 |
| AvaI | CYCGRG | 5 cut(s) | 272, 320, 335, 434, 467 |
| BaeGI | GKGCMC | 1 cut(s) | 1572 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2017, 2050 |
| BalI | TGGCCA | 5 cut(s) | 68, 686, 977, 1971, 2177 |
| BanI | GGYRCC | 1 cut(s) | 733 |
| BanII | GRGCYC | 6 cut(s) | 354, 553, 1572, 1694, 1798, 2258 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2141, 2173 |
| BbrPI | CACGTG | 2 cut(s) | 682, 1232 |
| BbsI | GAAGAC | 1 cut(s) | 291 |
| Bbv12I | GWGCWC | 4 cut(s) | 273, 553, 776, 1188 |
| BbvI | GCAGC | 5 cut(s) | 16, 672, 1670, 1685, 2041 |
| BccI | CCATC | 6 cut(s) | 118, 724, 827, 1545, 1686, 1766 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1856, 1890 |
| BciT130I | CCWGG | 6 cut(s) | 374, 386, 1530, 1544, 1968, 2246 |
| BcoDI | GTCTC | 3 cut(s) | 338, 630, 937 |
| BfaI | CTAG | 1 cut(s) | 1950 |
| BfoI | RGCGCY | 1 cut(s) | 737 |
| BglI | GCCNNNNNGGC | 5 cut(s) | 11, 702, 974, 983, 2122 |
| BglII | AGATCT | 1 cut(s) | 1503 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 841 |
| BmeT110I | CYCGRG | 5 cut(s) | 272, 320, 335, 434, 467 |
| BmgBI | CACGTC | 1 cut(s) | 838 |
| BmsI | GCATC | 1 cut(s) | 1230 |
| BpiI | GAAGAC | 1 cut(s) | 291 |
| BpmI | CTGGAG | 1 cut(s) | 790 |
| Bpu14I | TTCGAA | 2 cut(s) | 1397, 1784 |
| BpuEI | CTTGAG | 1 cut(s) | 1132 |
| BsaAI | YACGTR | 5 cut(s) | 682, 1189, 1193, 1232, 1256 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1398 |
| BsaHI | GRCGYC | 5 cut(s) | 399, 426, 734, 831, 1764 |
| BsaI | GGTCTC | 1 cut(s) | 338 |
| BsaWI | WCCGGW | 5 cut(s) | 776, 1094, 1111, 1180, 1681 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 374, 404, 566, 596, 1681, 1711 |
| Bse118I | RCCGGY | 5 cut(s) | 359, 422, 1111, 1336, 1453 |
| Bse1I | ACTGG | 6 cut(s) | 140, 493, 1075, 1579, 1603, 2089 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1398 |
| BseAI | TCCGGA | 1 cut(s) | 1681 |
| BseBI | CCWGG | 6 cut(s) | 374, 386, 1530, 1544, 1968, 2246 |
| BseJI | GATNNNNATC | 1 cut(s) | 1398 |
| BseMII | CTCAG | 1 cut(s) | 1835 |
| BseNI | ACTGG | 6 cut(s) | 140, 493, 1075, 1579, 1603, 2089 |
| BseRI | GAGGAG | 2 cut(s) | 154, 689 |
| BseSI | GKGCMC | 1 cut(s) | 1572 |
| BseX3I | CGGCCG | 1 cut(s) | 1445 |
| BseXI | GCAGC | 5 cut(s) | 16, 672, 1670, 1685, 2041 |
| BseYI | CCCAGC | 1 cut(s) | 1386 |
| BsgI | GTGCAG | 3 cut(s) | 107, 1695, 2208 |
| Bsh1285I | CGRYCG | 6 cut(s) | 714, 891, 1216, 1448, 1566, 1998 |
| BshNI | GGYRCC | 1 cut(s) | 733 |
| BshTI | ACCGGT | 1 cut(s) | 1111 |
| BsiEI | CGRYCG | 6 cut(s) | 714, 891, 1216, 1448, 1566, 1998 |
| BsiHKAI | GWGCWC | 4 cut(s) | 273, 553, 776, 1188 |
| BsiHKCI | CYCGRG | 5 cut(s) | 272, 320, 335, 434, 467 |
| BsiWI | CGTACG | 1 cut(s) | 1189 |
| BslFI | GGGAC | 8 cut(s) | 661, 661, 730, 1027, 1105, 1441, 1735, 1775 |
| BsmAI | GTCTC | 3 cut(s) | 338, 630, 937 |
| BsmBI | CGTCTC | 1 cut(s) | 630 |
| BsmFI | GGGAC | 8 cut(s) | 661, 661, 730, 1027, 1105, 1441, 1735, 1775 |
| BsmI | GAATGC | 1 cut(s) | 468 |
| Bso31I | GGTCTC | 1 cut(s) | 338 |
| BsoBI | CYCGRG | 5 cut(s) | 272, 320, 335, 434, 467 |
| Bsp119I | TTCGAA | 2 cut(s) | 1397, 1784 |
| Bsp120I | GGGCCC | 1 cut(s) | 1568 |
| Bsp1286I | GDGCHC | 9 cut(s) | 273, 354, 553, 776, 1188, 1572, 1694, 1798, 2258 |
| Bsp13I | TCCGGA | 1 cut(s) | 1681 |
| Bsp1407I | TGTACA | 1 cut(s) | 1083 |
| Bsp19I | CCATGG | 2 cut(s) | 63, 643 |
| Bsp68I | TCGCGA | 1 cut(s) | 893 |
| BspCNI | CTCAG | 1 cut(s) | 1834 |
| BspEI | TCCGGA | 1 cut(s) | 1681 |
| BspHI | TCATGA | 2 cut(s) | 597, 996 |
| BspPI | GGATC | 3 cut(s) | 466, 819, 1001 |
| BspQI | GCTCTTC | 2 cut(s) | 1592, 2246 |
| BspT104I | TTCGAA | 2 cut(s) | 1397, 1784 |
| BspT107I | GGYRCC | 1 cut(s) | 733 |
| BspTNI | GGTCTC | 1 cut(s) | 338 |
| BsrFI | RCCGGY | 5 cut(s) | 359, 422, 1111, 1336, 1453 |
| BsrGI | TGTACA | 1 cut(s) | 1083 |
| BsrI | ACTGG | 6 cut(s) | 140, 493, 1075, 1579, 1603, 2089 |
| BssAI | RCCGGY | 5 cut(s) | 359, 422, 1111, 1336, 1453 |
| BssNAI | GTATAC | 1 cut(s) | 1849 |
| BssNI | GRCGYC | 5 cut(s) | 399, 426, 734, 831, 1764 |
| BssT1I | CCWWGG | 4 cut(s) | 63, 643, 1017, 1890 |
| Bst1107I | GTATAC | 1 cut(s) | 1849 |
| Bst2UI | CCWGG | 6 cut(s) | 374, 386, 1530, 1544, 1968, 2246 |
| Bst4CI | ACNGT | 6 cut(s) | 953, 1003, 1325, 1432, 1833, 2164 |
| Bst6I | CTCTTC | 3 cut(s) | 186, 1592, 2246 |
| BstACI | GRCGYC | 5 cut(s) | 399, 426, 734, 831, 1764 |
| BstAUI | TGTACA | 1 cut(s) | 1083 |
| BstBAI | YACGTR | 5 cut(s) | 682, 1189, 1193, 1232, 1256 |
| BstBI | TTCGAA | 2 cut(s) | 1397, 1784 |
| BstC8I | GCNNGC | 7 cut(s) | 694, 805, 1163, 1167, 1300, 1656, 1917 |
| BstDEI | CTNAG | 2 cut(s) | 226, 1821 |
| BstDSI | CCRYGG | 7 cut(s) | 63, 208, 643, 989, 1260, 1767, 1790 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 383, 1583 |
| BstH2I | RGCGCY | 1 cut(s) | 737 |
| BstHHI | GCGC | 4 cut(s) | 489, 724, 736, 902 |
| BstMAI | GTCTC | 3 cut(s) | 338, 630, 937 |
| BstMCI | CGRYCG | 6 cut(s) | 714, 891, 1216, 1448, 1566, 1998 |
| BstNI | CCWGG | 6 cut(s) | 374, 386, 1530, 1544, 1968, 2246 |
| BstNSI | RCATGY | 3 cut(s) | 54, 1913, 1947 |
| BstSLI | GKGCMC | 1 cut(s) | 1572 |
| BstV1I | GCAGC | 5 cut(s) | 16, 672, 1670, 1685, 2041 |
| BstV2I | GAAGAC | 1 cut(s) | 291 |
| BstX2I | RGATCY | 2 cut(s) | 471, 1503 |
| BstYI | RGATCY | 2 cut(s) | 471, 1503 |
| BstZ17I | GTATAC | 1 cut(s) | 1849 |
| BstZI | CGGCCG | 1 cut(s) | 1445 |
| BtgI | CCRYGG | 7 cut(s) | 63, 208, 643, 989, 1260, 1767, 1790 |
| BtrI | CACGTC | 1 cut(s) | 838 |
| BtsIMutI | CAGTG | 6 cut(s) | 500, 958, 1068, 1572, 1712, 1829 |
| BtuMI | TCGCGA | 1 cut(s) | 893 |
| Cac8I | GCNNGC | 7 cut(s) | 694, 805, 1163, 1167, 1300, 1656, 1917 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1967 |
| CciI | TCATGA | 2 cut(s) | 597, 996 |
| CfoI | GCGC | 4 cut(s) | 489, 724, 736, 902 |
| Cfr10I | RCCGGY | 5 cut(s) | 359, 422, 1111, 1336, 1453 |
| Cfr42I | CCGCGG | 2 cut(s) | 1263, 1770 |
| CseI | GACGC | 5 cut(s) | 415, 464, 820, 1772, 2284 |
| CsiI | ACCWGGT | 1 cut(s) | 2244 |
| Csp6I | GTAC | 9 cut(s) | 139, 757, 874, 1084, 1190, 1253, 1442, 1623, 2158 |
| CspAI | ACCGGT | 1 cut(s) | 1111 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2107, 2142 |
| CviQI | GTAC | 9 cut(s) | 139, 757, 874, 1084, 1190, 1253, 1442, 1623, 2158 |
| DdeI | CTNAG | 2 cut(s) | 226, 1821 |
| DinI | GGCGCC | 1 cut(s) | 735 |
| DraIII | CACNNNGTG | 1 cut(s) | 2248 |
| DrdI | GACNNNNNNGTC | 3 cut(s) | 404, 425, 2203 |
| DriI | GACNNNNNGTC | 1 cut(s) | 841 |
| DseDI | GACNNNNNNGTC | 3 cut(s) | 404, 425, 2203 |
| EagI | CGGCCG | 1 cut(s) | 1445 |
| Eam1104I | CTCTTC | 3 cut(s) | 186, 1592, 2246 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 841 |
| EarI | CTCTTC | 3 cut(s) | 186, 1592, 2246 |
| EciI | GGCGGA | 3 cut(s) | 49, 242, 603 |
| Ecl136II | GAGCTC | 1 cut(s) | 551 |
| EclXI | CGGCCG | 1 cut(s) | 1445 |
| Eco130I | CCWWGG | 4 cut(s) | 63, 643, 1017, 1890 |
| Eco147I | AGGCCT | 2 cut(s) | 389, 968 |
| Eco24I | GRGCYC | 6 cut(s) | 354, 553, 1572, 1694, 1798, 2258 |
| Eco31I | GGTCTC | 1 cut(s) | 338 |
| Eco52I | CGGCCG | 1 cut(s) | 1445 |
| Eco53kI | GAGCTC | 1 cut(s) | 551 |
| Eco72I | CACGTG | 2 cut(s) | 682, 1232 |
| Eco88I | CYCGRG | 5 cut(s) | 272, 320, 335, 434, 467 |
| EcoICRI | GAGCTC | 1 cut(s) | 551 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 383, 1583 |
| EcoO109I | RGGNCCY | 5 cut(s) | 376, 648, 675, 864, 1014 |
| EcoRII | CCWGG | 6 cut(s) | 372, 384, 1528, 1542, 1966, 2244 |
| EcoT14I | CCWWGG | 4 cut(s) | 63, 643, 1017, 1890 |
| EcoT38I | GRGCYC | 6 cut(s) | 354, 553, 1572, 1694, 1798, 2258 |
| EgeI | GGCGCC | 1 cut(s) | 735 |
| EheI | GGCGCC | 1 cut(s) | 735 |
| ErhI | CCWWGG | 4 cut(s) | 63, 643, 1017, 1890 |
| Esp3I | CGTCTC | 1 cut(s) | 630 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 165, 197 |
| FaqI | GGGAC | 8 cut(s) | 661, 661, 730, 1027, 1105, 1441, 1735, 1775 |
| FauI | CCCGC | 5 cut(s) | 796, 1082, 1174, 1255, 1418 |
| FblI | GTMKAC | 3 cut(s) | 279, 834, 1848 |
| FriOI | GRGCYC | 6 cut(s) | 354, 553, 1572, 1694, 1798, 2258 |
| FspBI | CTAG | 1 cut(s) | 1950 |
| GlaI | GCGC | 4 cut(s) | 488, 723, 735, 901 |
| GsaI | CCCAGC | 1 cut(s) | 1390 |
| GsuI | CTGGAG | 1 cut(s) | 790 |
| HaeII | RGCGCY | 1 cut(s) | 737 |
| HgaI | GACGC | 5 cut(s) | 415, 464, 820, 1772, 2284 |
| HhaI | GCGC | 4 cut(s) | 489, 724, 736, 902 |
| Hin1I | GRCGYC | 5 cut(s) | 399, 426, 734, 831, 1764 |
| Hin6I | GCGC | 4 cut(s) | 487, 722, 734, 900 |
| HinP1I | GCGC | 4 cut(s) | 487, 722, 734, 900 |
| HincII | GTYRAC | 3 cut(s) | 835, 1537, 2040 |
| HindII | GTYRAC | 3 cut(s) | 835, 1537, 2040 |
| HindIII | AAGCTT | 1 cut(s) | 592 |
| HphI | GGTGA | 7 cut(s) | 508, 1316, 1376, 1504, 2110, 2122, 2260 |
| Hpy99I | CGWCG | 8 cut(s) | 410, 455, 458, 836, 839, 1352, 1453, 1868 |
| HpyAV | CCTTC | 5 cut(s) | 535, 604, 1589, 1819, 1995 |
| HpyCH4III | ACNGT | 6 cut(s) | 953, 1003, 1325, 1432, 1833, 2164 |
| HpyCH4V | TGCA | 8 cut(s) | 88, 531, 1658, 1700, 1712, 1915, 2189, 2270 |
| HpyF3I | CTNAG | 2 cut(s) | 226, 1821 |
| Hsp92I | GRCGYC | 5 cut(s) | 399, 426, 734, 831, 1764 |
| HspAI | GCGC | 4 cut(s) | 487, 722, 734, 900 |
| KasI | GGCGCC | 1 cut(s) | 733 |
| KflI | GGGWCCC | 2 cut(s) | 648, 675 |
| Kpn2I | TCCGGA | 1 cut(s) | 1681 |
| KspI | CCGCGG | 2 cut(s) | 1263, 1770 |
| LguI | GCTCTTC | 2 cut(s) | 1592, 2246 |
| LmnI | GCTCC | 9 cut(s) | 255, 512, 548, 555, 771, 1007, 1183, 1689, 1808 |
| Lsp1109I | GCAGC | 5 cut(s) | 16, 672, 1670, 1685, 2041 |
| LweI | GCATC | 1 cut(s) | 1230 |
| MabI | ACCWGGT | 1 cut(s) | 2244 |
| MaeI | CTAG | 1 cut(s) | 1950 |
| MboII | GAAGA | 6 cut(s) | 32, 173, 185, 296, 1609, 2263 |
| MfeI | CAATTG | 1 cut(s) | 2220 |
| MflI | RGATCY | 2 cut(s) | 471, 1503 |
| MhlI | GDGCHC | 9 cut(s) | 273, 354, 553, 776, 1188, 1572, 1694, 1798, 2258 |
| MlsI | TGGCCA | 5 cut(s) | 68, 686, 977, 1971, 2177 |
| MluCI | AATT | 4 cut(s) | 1310, 1371, 2210, 2220 |
| MluNI | TGGCCA | 5 cut(s) | 68, 686, 977, 1971, 2177 |
| Mly113I | GGCGCC | 1 cut(s) | 734 |
| MlyI | GAGTC | 7 cut(s) | 224, 257, 446, 629, 1368, 1489, 1568 |
| MmeI | TCCRAC | 4 cut(s) | 388, 771, 985, 1427 |
| Mox20I | TGGCCA | 5 cut(s) | 68, 686, 977, 1971, 2177 |
| MroI | TCCGGA | 1 cut(s) | 1681 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1957 |
| MscI | TGGCCA | 5 cut(s) | 68, 686, 977, 1971, 2177 |
| MslI | CAYNNNNRTG | 5 cut(s) | 911, 1073, 1191, 1647, 2171 |
| Msp20I | TGGCCA | 5 cut(s) | 68, 686, 977, 1971, 2177 |
| MspA1I | CMGCKG | 4 cut(s) | 1089, 1262, 1302, 1769 |
| MunI | CAATTG | 1 cut(s) | 2220 |
| Mva1269I | GAATGC | 1 cut(s) | 468 |
| MvaI | CCWGG | 6 cut(s) | 374, 386, 1530, 1544, 1968, 2246 |
| NarI | GGCGCC | 1 cut(s) | 734 |
| NcoI | CCATGG | 2 cut(s) | 63, 643 |
| NmeAIII | GCCGAG | 5 cut(s) | 34, 268, 643, 681, 984 |
| NmuCI | GTSAC | 6 cut(s) | 46, 362, 1325, 1492, 2080, 2164 |
| NruI | TCGCGA | 1 cut(s) | 893 |
| NspI | RCATGY | 3 cut(s) | 54, 1913, 1947 |
| NspV | TTCGAA | 2 cut(s) | 1397, 1784 |
| OliI | CACNNNNGTG | 4 cut(s) | 1073, 1191, 1647, 2171 |
| PaeR7I | CTCGAG | 1 cut(s) | 335 |
| PagI | TCATGA | 2 cut(s) | 597, 996 |
| PceI | AGGCCT | 2 cut(s) | 389, 968 |
| PciI | ACATGT | 2 cut(s) | 50, 1909 |
| PciSI | GCTCTTC | 2 cut(s) | 1592, 2246 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 279, 414, 423, 828, 834, 1389 |
| PctI | GAATGC | 1 cut(s) | 468 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1957 |
| PfeI | GAWTC | 6 cut(s) | 176, 344, 500, 1394, 1399, 1486 |
| Pfl23II | CGTACG | 1 cut(s) | 1189 |
| PflFI | GACNNNGTC | 1 cut(s) | 830 |
| PfoI | TCCNGGA | 1 cut(s) | 1758 |
| PinAI | ACCGGT | 1 cut(s) | 1111 |
| Ple19I | CGATCG | 3 cut(s) | 891, 1216, 1566 |
| PleI | GAGTC | 7 cut(s) | 224, 257, 445, 628, 1367, 1489, 1567 |
| PluTI | GGCGCC | 1 cut(s) | 737 |
| PmaCI | CACGTG | 2 cut(s) | 682, 1232 |
| PmlI | CACGTG | 2 cut(s) | 682, 1232 |
| PpsI | GAGTC | 7 cut(s) | 224, 257, 445, 628, 1367, 1489, 1567 |
| Ppu21I | YACGTR | 5 cut(s) | 682, 1189, 1193, 1232, 1256 |
| PpuMI | RGGWCCY | 4 cut(s) | 376, 648, 675, 1014 |
| PscI | ACATGT | 2 cut(s) | 50, 1909 |
| Psp124BI | GAGCTC | 1 cut(s) | 553 |
| Psp1406I | AACGTT | 2 cut(s) | 1063, 1938 |
| Psp5II | RGGWCCY | 4 cut(s) | 376, 648, 675, 1014 |
| Psp6I | CCWGG | 6 cut(s) | 372, 384, 1528, 1542, 1966, 2244 |
| PspCI | CACGTG | 2 cut(s) | 682, 1232 |
| PspFI | CCCAGC | 1 cut(s) | 1386 |
| PspGI | CCWGG | 6 cut(s) | 372, 384, 1528, 1542, 1966, 2244 |
| PspLI | CGTACG | 1 cut(s) | 1189 |
| PspOMI | GGGCCC | 1 cut(s) | 1568 |
| PspPPI | RGGWCCY | 4 cut(s) | 376, 648, 675, 1014 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1967 |
| PsuI | RGATCY | 2 cut(s) | 471, 1503 |
| PsyI | GACNNNGTC | 1 cut(s) | 830 |
| PvuI | CGATCG | 3 cut(s) | 891, 1216, 1566 |
| RgaI | GCGATCGC | 1 cut(s) | 1216 |
| RruI | TCGCGA | 1 cut(s) | 893 |
| RsaI | GTAC | 9 cut(s) | 140, 758, 875, 1085, 1191, 1254, 1443, 1624, 2159 |
| RsaNI | GTAC | 9 cut(s) | 139, 757, 874, 1084, 1190, 1253, 1442, 1623, 2158 |
| RseI | CAYNNNNRTG | 5 cut(s) | 911, 1073, 1191, 1647, 2171 |
| SacI | GAGCTC | 1 cut(s) | 553 |
| SacII | CCGCGG | 2 cut(s) | 1263, 1770 |
| SalI | GTCGAC | 1 cut(s) | 833 |
| SapI | GCTCTTC | 2 cut(s) | 1592, 2246 |
| SchI | GAGTC | 7 cut(s) | 224, 257, 446, 629, 1368, 1489, 1568 |
| SduI | GDGCHC | 9 cut(s) | 273, 354, 553, 776, 1188, 1572, 1694, 1798, 2258 |
| SexAI | ACCWGGT | 1 cut(s) | 2244 |
| SfaAI | GCGATCGC | 1 cut(s) | 1216 |
| SfaNI | GCATC | 1 cut(s) | 1230 |
| SfiI | GGCCNNNNNGGCC | 3 cut(s) | 11, 974, 983 |
| SfoI | GGCGCC | 1 cut(s) | 735 |
| Sfr274I | CTCGAG | 1 cut(s) | 335 |
| Sfr303I | CCGCGG | 2 cut(s) | 1263, 1770 |
| SfuI | TTCGAA | 2 cut(s) | 1397, 1784 |
| SgfI | GCGATCGC | 1 cut(s) | 1216 |
| SgrAI | CRCCGGYG | 2 cut(s) | 422, 1453 |
| SgrBI | CCGCGG | 2 cut(s) | 1263, 1770 |
| SgrDI | CGTCGACG | 1 cut(s) | 833 |
| SlaI | CTCGAG | 1 cut(s) | 335 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 911, 1073, 1191, 1647, 2171 |
| SmlI | CTYRAG | 2 cut(s) | 335, 1147 |
| SmoI | CTYRAG | 2 cut(s) | 335, 1147 |
| Sse9I | AATT | 4 cut(s) | 1310, 1371, 2210, 2220 |
| SseBI | AGGCCT | 2 cut(s) | 389, 968 |
| SspDI | GGCGCC | 1 cut(s) | 733 |
| SspI | AATATT | 1 cut(s) | 1958 |
| SspMI | CTAG | 1 cut(s) | 1950 |
| SstI | GAGCTC | 1 cut(s) | 553 |
| StuI | AGGCCT | 2 cut(s) | 389, 968 |
| StyI | CCWWGG | 4 cut(s) | 63, 643, 1017, 1890 |
| TaaI | ACNGT | 6 cut(s) | 953, 1003, 1325, 1432, 1833, 2164 |
| TaqII | GACCGA | 1 cut(s) | 1984 |
| TasI | AATT | 4 cut(s) | 1310, 1371, 2210, 2220 |
| TatI | WGTACW | 2 cut(s) | 1083, 2157 |
| TfiI | GAWTC | 6 cut(s) | 176, 344, 500, 1394, 1399, 1486 |
| TscAI | CASTG | 6 cut(s) | 500, 958, 1075, 1579, 1719, 1836 |
| TseFI | GTSAC | 6 cut(s) | 46, 362, 1325, 1492, 2080, 2164 |
| TseI | GCWGC | 5 cut(s) | 29, 660, 1658, 1673, 2054 |
| Tsp45I | GTSAC | 6 cut(s) | 46, 362, 1325, 1492, 2080, 2164 |
| TspDTI | ATGAA | 4 cut(s) | 107, 586, 1767, 1977 |
| TspGWI | ACGGA | 1 cut(s) | 861 |
| TspRI | CASTG | 6 cut(s) | 500, 958, 1075, 1579, 1719, 1836 |
| Tth111I | GACNNNGTC | 1 cut(s) | 830 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 383, 1583 |
| XapI | RAATTY | 1 cut(s) | 2210 |
| XbaI | TCTAGA | 1 cut(s) | 1949 |
| XceI | RCATGY | 3 cut(s) | 54, 1913, 1947 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 2071 |
| XhoI | CTCGAG | 1 cut(s) | 335 |
| XmiI | GTMKAC | 3 cut(s) | 279, 834, 1848 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1957 |
| XspI | CTAG | 1 cut(s) | 1950 |
| ZraI | GACGTC | 1 cut(s) | 400 |