subtilisin-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G05920 |
| fragaria_vesca | FvH4_1g08840 |
| malus_domestica | MD02G1093500.v1.1 MD15G1218800.v1.1 |
| prunus_persica | Prupe.7G197100_v2.0.a1 |
| pyrus_communis | pycom02g07370 pycom15g19400 |
| rosa_chinensis | RchiOBHm_Chr2g0095311 |
| rosa_laevigata | RLG00000016553 |
| rosa_multiflora | Rmu_ssc0000183.1_g000049 |
| rosa_roxburghii | Rroxscaffold_2G00146490 |
| rosa_rugosa | Rorug02G0049200 |
| rosa_samantha | Rh2AG097600 Rh2BG098800 Rh2CG100900 Rh2DG098500 |
| rosa_wichuraiana | Rw2G007360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 36 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 602, 1397 |
| AatII | GACGTC | 1 cut(s) | 1017 |
| AccB1I | GGYRCC | 2 cut(s) | 824, 910 |
| AccBSI | CCGCTC | 2 cut(s) | 891, 1046 |
| AccI | GTMKAC | 4 cut(s) | 456, 1011, 1992, 2250 |
| AccIII | TCCGGA | 1 cut(s) | 409 |
| AclWI | GGATC | 7 cut(s) | 401, 643, 996, 1178, 1206, 1565, 1666 |
| AcoI | YGGCCR | 7 cut(s) | 667, 861, 1152, 1622, 1944, 1984, 2146 |
| AcsI | RAATTY | 1 cut(s) | 2393 |
| AcuI | CTGAAG | 1 cut(s) | 1742 |
| AcvI | CACGTG | 1 cut(s) | 1409 |
| AcyI | GRCGYC | 6 cut(s) | 378, 911, 1008, 1014, 1398, 1425 |
| AfaI | GTAC | 8 cut(s) | 112, 317, 493, 1620, 1801, 2075, 2210, 2342 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 47, 84, 606, 849, 1200, 1363, 1602, 1942, 2002 |
| AflIII | ACRYGT | 1 cut(s) | 1408 |
| AgeI | ACCGGT | 1 cut(s) | 1288 |
| AgsI | TTSAA | 5 cut(s) | 559, 1615, 1687, 1786, 2317 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1018 |
| AjiI | CACGTC | 1 cut(s) | 1696 |
| AjnI | CCWGG | 6 cut(s) | 414, 504, 549, 561, 1705, 2019 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1346, 1378 |
| AleI | CACNNNNGTG | 2 cut(s) | 1250, 1824 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 263, 295, 551, 583 |
| Alw21I | GWGCWC | 5 cut(s) | 211, 267, 730, 953, 2066 |
| Alw26I | GTCTC | 7 cut(s) | 56, 236, 804, 1114, 1260, 1632, 1932 |
| Alw44I | GTGCAC | 1 cut(s) | 263 |
| AlwI | GGATC | 7 cut(s) | 401, 643, 996, 1178, 1206, 1565, 1666 |
| Ama87I | CYCGRG | 4 cut(s) | 497, 611, 644, 2214 |
| Aor13HI | TCCGGA | 1 cut(s) | 409 |
| ApaI | GGGCCC | 3 cut(s) | 1137, 1662, 1749 |
| ApaLI | GTGCAC | 1 cut(s) | 263 |
| ApeKI | GCWGC | 6 cut(s) | 424, 1436, 1586, 1724, 1835, 2237 |
| ApoI | RAATTY | 1 cut(s) | 2393 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 538, 570, 2257, 2289 |
| AsiGI | ACCGGT | 1 cut(s) | 1288 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2134 |
| AsuHPI | GGTGA | 7 cut(s) | 1237, 1393, 1493, 1553, 1681, 2004, 2293 |
| AvaI | CYCGRG | 4 cut(s) | 497, 611, 644, 2214 |
| BaeGI | GKGCMC | 5 cut(s) | 267, 1137, 1662, 1749, 1977 |
| BalI | TGGCCA | 2 cut(s) | 863, 1154 |
| BanI | GGYRCC | 2 cut(s) | 824, 910 |
| BanII | GRGCYC | 7 cut(s) | 211, 730, 1137, 1662, 1749, 1871, 2246 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 239, 271, 2324, 2356 |
| BauI | CACGAG | 2 cut(s) | 857, 2309 |
| BbrPI | CACGTG | 1 cut(s) | 1409 |
| BbsI | GAAGAC | 1 cut(s) | 468 |
| Bbv12I | GWGCWC | 5 cut(s) | 211, 267, 730, 953, 2066 |
| BbvI | GCAGC | 6 cut(s) | 411, 1448, 1573, 1736, 1847, 2249 |
| BccI | CCATC | 2 cut(s) | 1004, 1863 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1713, 1747 |
| BciT130I | CCWGG | 6 cut(s) | 416, 506, 551, 563, 1707, 2021 |
| BclI | TGATCA | 1 cut(s) | 1543 |
| BcoDI | GTCTC | 7 cut(s) | 56, 236, 804, 1114, 1260, 1632, 1932 |
| BfaI | CTAG | 3 cut(s) | 1031, 1226, 2429 |
| BfoI | RGCGCY | 2 cut(s) | 914, 2009 |
| BglI | GCCNNNNNGGC | 4 cut(s) | 191, 1151, 1753, 2305 |
| BglII | AGATCT | 1 cut(s) | 1680 |
| BlpI | GCTNAGC | 1 cut(s) | 1563 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1018 |
| BmeT110I | CYCGRG | 4 cut(s) | 497, 611, 644, 2214 |
| BmgBI | CACGTC | 1 cut(s) | 1696 |
| BmsI | GCATC | 1 cut(s) | 575 |
| BoxI | GACNNNNGTC | 2 cut(s) | 48, 2228 |
| BpiI | GAAGAC | 1 cut(s) | 468 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 198, 230 |
| BpmI | CTGGAG | 4 cut(s) | 83, 314, 820, 967 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1563 |
| BpuEI | CTTGAG | 3 cut(s) | 151, 796, 1829 |
| Bsa29I | ATCGAT | 1 cut(s) | 19 |
| BsaAI | YACGTR | 1 cut(s) | 1409 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1457, 1575 |
| BsaHI | GRCGYC | 6 cut(s) | 378, 911, 1008, 1014, 1398, 1425 |
| BsaI | GGTCTC | 1 cut(s) | 56 |
| BsaWI | WCCGGW | 8 cut(s) | 286, 409, 635, 953, 1239, 1271, 1288, 1630 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 263, 293, 302, 332, 1858, 1888, 2243, 2273 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 47, 84, 606, 849, 1200, 1363, 1602, 1942, 2002 |
| Bse118I | RCCGGY | 2 cut(s) | 1247, 1288 |
| Bse1I | ACTGG | 8 cut(s) | 317, 331, 433, 670, 1294, 1476, 1780, 2268 |
| Bse3DI | GCAATG | 1 cut(s) | 2049 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1457, 1575 |
| BseAI | TCCGGA | 1 cut(s) | 409 |
| BseBI | CCWGG | 6 cut(s) | 416, 506, 551, 563, 1707, 2021 |
| BseCI | ATCGAT | 1 cut(s) | 19 |
| BseGI | GGATG | 5 cut(s) | 566, 962, 1458, 1768, 1855 |
| BseJI | GATNNNNATC | 2 cut(s) | 1457, 1575 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 47, 84, 606, 849, 1200, 1363, 1602, 1942, 2002 |
| BseMI | GCAATG | 1 cut(s) | 2049 |
| BseMII | CTCAG | 2 cut(s) | 363, 1577 |
| BseNI | ACTGG | 8 cut(s) | 317, 331, 433, 670, 1294, 1476, 1780, 2268 |
| BsePI | GCGCGC | 2 cut(s) | 920, 1432 |
| BseRI | GAGGAG | 5 cut(s) | 15, 331, 792, 866, 1499 |
| BseSI | GKGCMC | 5 cut(s) | 267, 1137, 1662, 1749, 1977 |
| BseX3I | CGGCCG | 2 cut(s) | 1622, 1944 |
| BseXI | GCAGC | 6 cut(s) | 411, 1448, 1573, 1736, 1847, 2249 |
| BseYI | CCCAGC | 1 cut(s) | 161 |
| BsgI | GTGCAG | 1 cut(s) | 2391 |
| Bsh1285I | CGRYCG | 7 cut(s) | 19, 1068, 1393, 1625, 1635, 1743, 1947 |
| BshNI | GGYRCC | 2 cut(s) | 824, 910 |
| BshTI | ACCGGT | 1 cut(s) | 1288 |
| BshVI | ATCGAT | 1 cut(s) | 19 |
| BsiEI | CGRYCG | 7 cut(s) | 19, 1068, 1393, 1625, 1635, 1743, 1947 |
| BsiHKAI | GWGCWC | 5 cut(s) | 211, 267, 730, 953, 2066 |
| BsiHKCI | CYCGRG | 4 cut(s) | 497, 611, 644, 2214 |
| BslFI | GGGAC | 7 cut(s) | 319, 540, 838, 1204, 1282, 1618, 1912 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 47, 84, 606, 849, 1200, 1363, 1602, 1942, 2002 |
| BsmAI | GTCTC | 7 cut(s) | 56, 236, 804, 1114, 1260, 1632, 1932 |
| BsmBI | CGTCTC | 3 cut(s) | 1114, 1632, 1932 |
| BsmFI | GGGAC | 7 cut(s) | 319, 540, 838, 1204, 1282, 1618, 1912 |
| BsmI | GAATGC | 2 cut(s) | 11, 645 |
| Bso31I | GGTCTC | 1 cut(s) | 56 |
| BsoBI | CYCGRG | 4 cut(s) | 497, 611, 644, 2214 |
| Bsp120I | GGGCCC | 3 cut(s) | 1133, 1658, 1745 |
| Bsp13I | TCCGGA | 1 cut(s) | 409 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1563 |
| Bsp19I | CCATGG | 3 cut(s) | 180, 240, 1166 |
| Bsp68I | TCGCGA | 2 cut(s) | 807, 1070 |
| BspCNI | CTCAG | 2 cut(s) | 362, 1576 |
| BspDI | ATCGAT | 1 cut(s) | 19 |
| BspEI | TCCGGA | 1 cut(s) | 409 |
| BspHI | TCATGA | 1 cut(s) | 1173 |
| BspPI | GGATC | 7 cut(s) | 401, 643, 996, 1178, 1206, 1565, 1666 |
| BspQI | GCTCTTC | 1 cut(s) | 1769 |
| BspT107I | GGYRCC | 2 cut(s) | 824, 910 |
| BspTNI | GGTCTC | 1 cut(s) | 56 |
| BsrBI | CCGCTC | 2 cut(s) | 891, 1046 |
| BsrDI | GCAATG | 1 cut(s) | 2049 |
| BsrFI | RCCGGY | 2 cut(s) | 1247, 1288 |
| BsrI | ACTGG | 8 cut(s) | 317, 331, 433, 670, 1294, 1476, 1780, 2268 |
| BssAI | RCCGGY | 2 cut(s) | 1247, 1288 |
| BssHII | GCGCGC | 2 cut(s) | 920, 1432 |
| BssNAI | GTATAC | 1 cut(s) | 2251 |
| BssNI | GRCGYC | 6 cut(s) | 378, 911, 1008, 1014, 1398, 1425 |
| BssSI | CACGAG | 2 cut(s) | 857, 2309 |
| BssT1I | CCWWGG | 4 cut(s) | 180, 240, 1166, 1194 |
| Bst1107I | GTATAC | 1 cut(s) | 2251 |
| Bst2BI | CACGAG | 2 cut(s) | 857, 2309 |
| Bst2UI | CCWGG | 6 cut(s) | 416, 506, 551, 563, 1707, 2021 |
| Bst6I | CTCTTC | 3 cut(s) | 76, 132, 1769 |
| BstACI | GRCGYC | 6 cut(s) | 378, 911, 1008, 1014, 1398, 1425 |
| BstBAI | YACGTR | 1 cut(s) | 1409 |
| BstDEI | CTNAG | 5 cut(s) | 235, 349, 403, 1140, 1563 |
| BstDSI | CCRYGG | 5 cut(s) | 180, 240, 385, 1166, 1967 |
| BstF5I | GGATG | 5 cut(s) | 566, 962, 1458, 1768, 1855 |
| BstH2I | RGCGCY | 2 cut(s) | 914, 2009 |
| BstMAI | GTCTC | 7 cut(s) | 56, 236, 804, 1114, 1260, 1632, 1932 |
| BstMCI | CGRYCG | 7 cut(s) | 19, 1068, 1393, 1625, 1635, 1743, 1947 |
| BstNI | CCWGG | 6 cut(s) | 416, 506, 551, 563, 1707, 2021 |
| BstNSI | RCATGY | 1 cut(s) | 2090 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 48, 2228 |
| BstSLI | GKGCMC | 5 cut(s) | 267, 1137, 1662, 1749, 1977 |
| BstV1I | GCAGC | 6 cut(s) | 411, 1448, 1573, 1736, 1847, 2249 |
| BstV2I | GAAGAC | 1 cut(s) | 468 |
| BstX2I | RGATCY | 3 cut(s) | 406, 648, 1680 |
| BstYI | RGATCY | 3 cut(s) | 406, 648, 1680 |
| BstZ17I | GTATAC | 1 cut(s) | 2251 |
| BstZI | CGGCCG | 2 cut(s) | 1622, 1944 |
| Bsu15I | ATCGAT | 1 cut(s) | 19 |
| BsuTUI | ATCGAT | 1 cut(s) | 19 |
| BtgI | CCRYGG | 5 cut(s) | 180, 240, 385, 1166, 1967 |
| BtrI | CACGTC | 1 cut(s) | 1696 |
| BtsCI | GGATG | 5 cut(s) | 566, 962, 1458, 1768, 1855 |
| BtsI | GCAGTG | 1 cut(s) | 1838 |
| BtsIMutI | CAGTG | 4 cut(s) | 677, 1135, 1483, 1838 |
| BtuMI | TCGCGA | 2 cut(s) | 807, 1070 |
| CciI | TCATGA | 1 cut(s) | 1173 |
| Cfr10I | RCCGGY | 2 cut(s) | 1247, 1288 |
| Cfr9I | CCCGGG | 1 cut(s) | 2214 |
| ClaI | ATCGAT | 1 cut(s) | 19 |
| CseI | GACGC | 7 cut(s) | 386, 913, 997, 1387, 1414, 1949, 2467 |
| Csp6I | GTAC | 8 cut(s) | 111, 316, 492, 1619, 1800, 2074, 2209, 2341 |
| CspAI | ACCGGT | 1 cut(s) | 1288 |
| CviQI | GTAC | 8 cut(s) | 111, 316, 492, 1619, 1800, 2074, 2209, 2341 |
| DdeI | CTNAG | 5 cut(s) | 235, 349, 403, 1140, 1563 |
| DinI | GGCGCC | 1 cut(s) | 912 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 602, 1397 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1018 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 602, 1397 |
| EaeI | YGGCCR | 7 cut(s) | 667, 861, 1152, 1622, 1944, 1984, 2146 |
| EagI | CGGCCG | 2 cut(s) | 1622, 1944 |
| Eam1104I | CTCTTC | 3 cut(s) | 76, 132, 1769 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1018 |
| EarI | CTCTTC | 3 cut(s) | 76, 132, 1769 |
| EciI | GGCGGA | 3 cut(s) | 310, 419, 780 |
| Ecl136II | GAGCTC | 2 cut(s) | 209, 728 |
| EclXI | CGGCCG | 2 cut(s) | 1622, 1944 |
| Eco130I | CCWWGG | 4 cut(s) | 180, 240, 1166, 1194 |
| Eco147I | AGGCCT | 2 cut(s) | 194, 1145 |
| Eco24I | GRGCYC | 7 cut(s) | 211, 730, 1137, 1662, 1749, 1871, 2246 |
| Eco31I | GGTCTC | 1 cut(s) | 56 |
| Eco52I | CGGCCG | 2 cut(s) | 1622, 1944 |
| Eco53kI | GAGCTC | 2 cut(s) | 209, 728 |
| Eco57I | CTGAAG | 1 cut(s) | 1742 |
| Eco72I | CACGTG | 1 cut(s) | 1409 |
| Eco88I | CYCGRG | 4 cut(s) | 497, 611, 644, 2214 |
| EcoICRI | GAGCTC | 2 cut(s) | 209, 728 |
| EcoO109I | RGGNCCY | 3 cut(s) | 852, 1191, 1658 |
| EcoRII | CCWGG | 6 cut(s) | 414, 504, 549, 561, 1705, 2019 |
| EcoT14I | CCWWGG | 4 cut(s) | 180, 240, 1166, 1194 |
| EcoT38I | GRGCYC | 7 cut(s) | 211, 730, 1137, 1662, 1749, 1871, 2246 |
| EgeI | GGCGCC | 1 cut(s) | 912 |
| EheI | GGCGCC | 1 cut(s) | 912 |
| ErhI | CCWWGG | 4 cut(s) | 180, 240, 1166, 1194 |
| Esp3I | CGTCTC | 3 cut(s) | 1114, 1632, 1932 |
| FaqI | GGGAC | 7 cut(s) | 319, 540, 838, 1204, 1282, 1618, 1912 |
| FauI | CCCGC | 5 cut(s) | 529, 973, 1259, 1595, 2233 |
| FauNDI | CATATG | 1 cut(s) | 1558 |
| FbaI | TGATCA | 1 cut(s) | 1543 |
| FblI | GTMKAC | 4 cut(s) | 456, 1011, 1992, 2250 |
| FokI | GGATG | 5 cut(s) | 553, 969, 1465, 1775, 1842 |
| FriOI | GRGCYC | 7 cut(s) | 211, 730, 1137, 1662, 1749, 1871, 2246 |
| FspBI | CTAG | 3 cut(s) | 1031, 1226, 2429 |
| GsaI | CCCAGC | 1 cut(s) | 165 |
| GsuI | CTGGAG | 4 cut(s) | 83, 314, 820, 967 |
| HaeII | RGCGCY | 2 cut(s) | 914, 2009 |
| HgaI | GACGC | 7 cut(s) | 386, 913, 997, 1387, 1414, 1949, 2467 |
| Hin1I | GRCGYC | 6 cut(s) | 378, 911, 1008, 1014, 1398, 1425 |
| HincII | GTYRAC | 4 cut(s) | 1012, 1402, 1714, 1993 |
| HindII | GTYRAC | 4 cut(s) | 1012, 1402, 1714, 1993 |
| HindIII | AAGCTT | 1 cut(s) | 169 |
| HinfI | GANTC | 8 cut(s) | 290, 347, 353, 440, 521, 528, 614, 677 |
| HphI | GGTGA | 7 cut(s) | 1237, 1393, 1493, 1553, 1681, 2004, 2293 |
| HpyAV | CCTTC | 6 cut(s) | 205, 227, 1606, 1996, 2172, 2283 |
| HpyCH4IV | ACGT | 5 cut(s) | 576, 1014, 1408, 1695, 2351 |
| HpyCH4V | TGCA | 7 cut(s) | 265, 708, 1589, 1835, 2054, 2372, 2453 |
| HpyF3I | CTNAG | 5 cut(s) | 235, 349, 403, 1140, 1563 |
| HpySE526I | ACGT | 5 cut(s) | 576, 1014, 1408, 1695, 2351 |
| Hsp92I | GRCGYC | 6 cut(s) | 378, 911, 1008, 1014, 1398, 1425 |
| KasI | GGCGCC | 1 cut(s) | 910 |
| KflI | GGGWCCC | 1 cut(s) | 852 |
| Kpn2I | TCCGGA | 1 cut(s) | 409 |
| Ksp22I | TGATCA | 1 cut(s) | 1543 |
| LguI | GCTCTTC | 1 cut(s) | 1769 |
| Lsp1109I | GCAGC | 6 cut(s) | 411, 1448, 1573, 1736, 1847, 2249 |
| LweI | GCATC | 1 cut(s) | 575 |
| MaeI | CTAG | 3 cut(s) | 1031, 1226, 2429 |
| MaeII | ACGT | 5 cut(s) | 576, 1014, 1408, 1695, 2351 |
| MaeIII | GTNAC | 8 cut(s) | 539, 818, 881, 1328, 1502, 2116, 2263, 2347 |
| MauBI | CGCGCGCG | 1 cut(s) | 920 |
| MbiI | CCGCTC | 2 cut(s) | 891, 1046 |
| MboII | GAAGA | 7 cut(s) | 63, 119, 125, 212, 473, 1542, 1786 |
| MfeI | CAATTG | 1 cut(s) | 2403 |
| MflI | RGATCY | 3 cut(s) | 406, 648, 1680 |
| MlsI | TGGCCA | 2 cut(s) | 863, 1154 |
| MluCI | AATT | 4 cut(s) | 1590, 2219, 2393, 2403 |
| MluNI | TGGCCA | 2 cut(s) | 863, 1154 |
| Mly113I | GGCGCC | 1 cut(s) | 911 |
| MlyI | GAGTC | 4 cut(s) | 341, 434, 522, 623 |
| MmeI | TCCRAC | 7 cut(s) | 369, 462, 1162, 1341, 1507, 1713, 2370 |
| Mox20I | TGGCCA | 2 cut(s) | 863, 1154 |
| MroI | TCCGGA | 1 cut(s) | 409 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2134 |
| MscI | TGGCCA | 2 cut(s) | 863, 1154 |
| MslI | CAYNNNNRTG | 5 cut(s) | 638, 1088, 1250, 1824, 2059 |
| Msp20I | TGGCCA | 2 cut(s) | 863, 1154 |
| MspA1I | CMGCKG | 4 cut(s) | 1266, 1439, 1517, 2240 |
| MunI | CAATTG | 1 cut(s) | 2403 |
| Mva1269I | GAATGC | 2 cut(s) | 11, 645 |
| MvaI | CCWGG | 6 cut(s) | 416, 506, 551, 563, 1707, 2021 |
| NarI | GGCGCC | 1 cut(s) | 911 |
| NcoI | CCATGG | 3 cut(s) | 180, 240, 1166 |
| NdeI | CATATG | 1 cut(s) | 1558 |
| NmeAIII | GCCGAG | 3 cut(s) | 445, 810, 2065 |
| NmuCI | GTSAC | 4 cut(s) | 539, 818, 1502, 2263 |
| NruI | TCGCGA | 2 cut(s) | 807, 1070 |
| NspI | RCATGY | 1 cut(s) | 2090 |
| OliI | CACNNNNGTG | 2 cut(s) | 1250, 1824 |
| PagI | TCATGA | 1 cut(s) | 1173 |
| PauI | GCGCGC | 2 cut(s) | 920, 1432 |
| PceI | AGGCCT | 2 cut(s) | 194, 1145 |
| PciSI | GCTCTTC | 1 cut(s) | 1769 |
| PcsI | WCGNNNNNNNCGW | 4 cut(s) | 1008, 1011, 1410, 1605 |
| PctI | GAATGC | 2 cut(s) | 11, 645 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2134 |
| PfeI | GAWTC | 4 cut(s) | 290, 353, 521, 677 |
| PflFI | GACNNNGTC | 2 cut(s) | 443, 1007 |
| PinAI | ACCGGT | 1 cut(s) | 1288 |
| Ple19I | CGATCG | 3 cut(s) | 19, 1068, 1743 |
| PleI | GAGTC | 4 cut(s) | 341, 434, 522, 622 |
| PluTI | GGCGCC | 1 cut(s) | 914 |
| PmaCI | CACGTG | 1 cut(s) | 1409 |
| PmlI | CACGTG | 1 cut(s) | 1409 |
| PpsI | GAGTC | 4 cut(s) | 341, 434, 522, 622 |
| Ppu21I | YACGTR | 1 cut(s) | 1409 |
| PpuMI | RGGWCCY | 2 cut(s) | 852, 1191 |
| PshAI | GACNNNNGTC | 2 cut(s) | 48, 2228 |
| PsiI | TTATAA | 1 cut(s) | 36 |
| Psp124BI | GAGCTC | 2 cut(s) | 211, 730 |
| Psp5II | RGGWCCY | 2 cut(s) | 852, 1191 |
| Psp6I | CCWGG | 6 cut(s) | 414, 504, 549, 561, 1705, 2019 |
| PspCI | CACGTG | 1 cut(s) | 1409 |
| PspFI | CCCAGC | 1 cut(s) | 161 |
| PspGI | CCWGG | 6 cut(s) | 414, 504, 549, 561, 1705, 2019 |
| PspOMI | GGGCCC | 3 cut(s) | 1133, 1658, 1745 |
| PspPPI | RGGWCCY | 2 cut(s) | 852, 1191 |
| PsuI | RGATCY | 3 cut(s) | 406, 648, 1680 |
| PsyI | GACNNNGTC | 2 cut(s) | 443, 1007 |
| PteI | GCGCGC | 2 cut(s) | 920, 1432 |
| PvuI | CGATCG | 3 cut(s) | 19, 1068, 1743 |
| PvuII | CAGCTG | 2 cut(s) | 1439, 1517 |
| RruI | TCGCGA | 2 cut(s) | 807, 1070 |
| RsaI | GTAC | 8 cut(s) | 112, 317, 493, 1620, 1801, 2075, 2210, 2342 |
| RsaNI | GTAC | 8 cut(s) | 111, 316, 492, 1619, 1800, 2074, 2209, 2341 |
| RseI | CAYNNNNRTG | 5 cut(s) | 638, 1088, 1250, 1824, 2059 |
| SacI | GAGCTC | 2 cut(s) | 211, 730 |
| SalI | GTCGAC | 2 cut(s) | 1010, 1991 |
| SapI | GCTCTTC | 1 cut(s) | 1769 |
| SchI | GAGTC | 4 cut(s) | 341, 434, 522, 623 |
| SfaNI | GCATC | 1 cut(s) | 575 |
| SfiI | GGCCNNNNNGGCC | 2 cut(s) | 191, 1151 |
| SfoI | GGCGCC | 1 cut(s) | 912 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1247 |
| SgrDI | CGTCGACG | 1 cut(s) | 1010 |
| SmaI | CCCGGG | 1 cut(s) | 2216 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 638, 1088, 1250, 1824, 2059 |
| SmlI | CTYRAG | 3 cut(s) | 166, 775, 1844 |
| SmoI | CTYRAG | 3 cut(s) | 166, 775, 1844 |
| Sse9I | AATT | 4 cut(s) | 1590, 2219, 2393, 2403 |
| SseBI | AGGCCT | 2 cut(s) | 194, 1145 |
| SspDI | GGCGCC | 1 cut(s) | 910 |
| SspMI | CTAG | 3 cut(s) | 1031, 1226, 2429 |
| SstI | GAGCTC | 2 cut(s) | 211, 730 |
| StuI | AGGCCT | 2 cut(s) | 194, 1145 |
| StyI | CCWWGG | 4 cut(s) | 180, 240, 1166, 1194 |
| TaiI | ACGT | 5 cut(s) | 579, 1017, 1411, 1698, 2354 |
| TaqII | GACCGA | 2 cut(s) | 38, 1407 |
| TasI | AATT | 4 cut(s) | 1590, 2219, 2393, 2403 |
| TatI | WGTACW | 3 cut(s) | 110, 2073, 2340 |
| TfiI | GAWTC | 4 cut(s) | 290, 353, 521, 677 |
| TscAI | CASTG | 4 cut(s) | 677, 1135, 1483, 1845 |
| TseFI | GTSAC | 4 cut(s) | 539, 818, 1502, 2263 |
| TseI | GCWGC | 6 cut(s) | 424, 1436, 1586, 1724, 1835, 2237 |
| Tsp45I | GTSAC | 4 cut(s) | 539, 818, 1502, 2263 |
| TspDTI | ATGAA | 3 cut(s) | 17, 119, 284 |
| TspGWI | ACGGA | 1 cut(s) | 2251 |
| TspMI | CCCGGG | 1 cut(s) | 2214 |
| TspRI | CASTG | 4 cut(s) | 677, 1135, 1483, 1845 |
| Tth111I | GACNNNGTC | 2 cut(s) | 443, 1007 |
| VneI | GTGCAC | 1 cut(s) | 263 |
| XapI | RAATTY | 1 cut(s) | 2393 |
| XceI | RCATGY | 1 cut(s) | 2090 |
| XmaI | CCCGGG | 1 cut(s) | 2214 |
| XmiI | GTMKAC | 4 cut(s) | 456, 1011, 1992, 2250 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2134 |
| XspI | CTAG | 3 cut(s) | 1031, 1226, 2429 |
| ZraI | GACGTC | 1 cut(s) | 1015 |