Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013828

Physical Location & Seq

Genomic Coordinates Forward (+)

7929486 .. 7932758

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG098500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2292 bp

ATGGCCTCCTCCGAGGCCCAGTTCTGGTTCGTAGCTTTAACACTTGTTCTGCCATGTCTATCCGTAACCGCCAAACAGACGTACATAGTTCAGATGAAACACCATTCCAAACCCTCCTCATTCGCCACCCACAGTGACTGGTACTCAGCCAACCTCCAAGCTCTCTCCTCTGACTCTGACTCTGACGCCCTCCTTTACACCTACGACGCCGCCTACCACGGCTTCGCCGCTTCTCTAGATCCCGAACAGGCCGACACTCTGCGGCAGTCGGAATCTGTAATCGGGGTATTCGAGGATACTTTATACAACCTCCACACCACACGAACACCCGAGTTTCTGGGCCTGGAAACCGCTAACGGGCTCTGGGCCGGACACTCGCTCCAGGACCTGAACCAGGCCTCCAATGACGTCATCGTCGGAGTGCTGGACACCGGAGTCTGGCCGGAGTCCAAGAGCTTCAACGATGCGGGAATGCCAGAGATCCCGTCCAGGTGGCGGGGACAGTGCGAGTCGGGAGCCGATTTCAGCCCCTCTCTCTGCAACAAGAAGCTGATCGGAGCCCGGAGCTTTTCTAAAGGCTACCGCATGGCCTCCGGCGGAAGCTACATGAAGAAACCGAAAGAGGCCGAGTCGCCGAGGGACCAAGACGGCCACGGGACCCACACGTCCAGCACCGCCGCCGGGTCGCTGGTGGCGAACGCCAGCCTGCTGGGTTACGCGAGCGGGACGGCGCGTGGGATGGCGCCTCACGCGCGGGTTGCCACCTACAAGGTCTGCTGGACCACGGGTTGCTTCGGGTCCGATATCCTCGCGGGTATGGATCGGGCGATCCTCGACGGAGTTGATGTGCTGTCGCTCTCTTTGGGCGGCGGGTCCGCCCCGTACTTTAGGGACACAATCGCAATAGGAGCTTTCACCGCCATGGAGAGGGGCATTTTCGTCTCTTGCTCGGCCGGAAATAGCGGGCCAAGTAGGGCCTCATTGGCCAACACAGCCCCGTGGATCATGACGGTTGGAGCCGGAACCTTGGACCGGGACTTCCCGGCTTTCGCTTTGCTCGGAAACCAAAAACGGTTCACCGGCGTGTCACTTTACAGCGGCACCGGAATGGGGTCAAAACCGGTGGGGTTGGTTTACAACAAGGGGACTAACGGCTCCAGCAATCTGTGCTTGCCCGGTTCGCTCCAACCGGAGTCGGTACGTGGGAAAGTGGTGATTTGCGACAGGGGAGTTAACGCACGTGTGGAGAAGGGTGGAGTTGTACGCGCCGCGGGTGGGGTTGGGATGATACTCGCCAACACCGCCGCGAGCGGAGAGGAAATGGTGGCGGACAGTCACTTGTTACCGGCTGTTGCGGTTGGGAGGAAAGTGGGTGACTTGATAAGGCAGTATGCACAGTCAGATCCGAATCCGACGGCGGTGATTAGCTTTGGTGGGACGGTGCTGAATGTCCGGCCGTCGCCGGTTGTGGCGGCGTTTAGCTCTCGTGGGCCAAATTTGGTTACTCCCCAGATCTTGAAGCCCGATGTGATTGGTCCAGGGGTTAACATCTTGGCTGCATGGTCAGAGGCTATTGGGCCCACTGGGCTTGCGGAGGACTCTAGGAAGAGTCAGTTCAACATCATGTCAGGTACATCTATGTCATGCCCACACATAAGTGGGCTTGCAGCATTGCTCAAAGCGGCCCATCCCAATTGGAGCCCAAGTGCAATTAAATCCGCTCTCATGACTACAGCGTACACACATGACAACACCATGTCTCCTCTCCGTGATGCTGCCGGTGGCACATTTTCGAATCCGTGGGCACATGGTTCTGGCCATGTCGATCCCTCGAAAGCCGTCACGCCGGGTCTTGTATACGACATTTCGAGCGATGACTATGTTGCATTTTTGTGCTCGCTGGACTACACCATCGATCATGTCCAAACCATTGCTAAGAGAAACGTTACATGCGCAAGAAAGTACTCTGATCCTGGACAACTCAACTACCCTTCATTCTCAGTTGTGTTTGGGAACAAGAGGGTTGTGAGATACAGTCGAGAATTGACAAATGTAGGGACTGCAGGTTCTTTATACAAGGTCATAGTGAGCGGACCACCCGGAGTGAAGACTATTGTTAAACCCTCAAGGCTTTTCTTTGCAACTGTAGGGGAGAAGAAGAAGTACACAGTCACCTTTGTGTCTGCCAAGGGCGGCAGTAGAACATCAAGGTCAGAATTTGGTTCGATCATGTGGGCAAACCCCCTACACCTCGTTAAGAGCCCAGTTGCTTTTGCATGGACGCTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009505 GO:0009506 GO:0012505 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

763

Amino Acids

80.57

Weight (kDa)

8.76

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	27 - 105	7.8e-19	Peptidase inhibitor I9
Peptidase_S8	PF00082	135 - 583	9.1e-46	Subtilase family
PA	PF02225	378 - 460	5.9e-12	PA domain
fn3_6	PF17766	660 - 757	2.1e-23	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05920
fragaria_vesca	FvH4_1g08840
malus_domestica	MD02G1093500.v1.1 MD15G1218800.v1.1
prunus_persica	Prupe.7G197100_v2.0.a1
pyrus_communis	pycom02g07370 pycom15g19400
rosa_chinensis	RchiOBHm_Chr2g0095311
rosa_laevigata	RLG00000016553
rosa_multiflora	Rmu_ssc0000183.1_g000049
rosa_roxburghii	Rroxscaffold_2G00146490
rosa_rugosa	Rorug02G0049200
rosa_samantha	Rh2AG097600 Rh2BG098800 Rh2CG100900 Rh2DG098500
rosa_wichuraiana	Rw2G007360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	413, 434, 664
AatII	GACGTC	1 cut(s)	411
Acc16I	TGCGCA	1 cut(s)	1954
Acc36I	ACCTGC	1 cut(s)	2054
AccB1I	GGYRCC	2 cut(s)	742, 1100
AccBSI	CCGCTC	4 cut(s)	723, 1311, 1721, 2091
AccI	GTMKAC	1 cut(s)	1857
AccII	CGCG	8 cut(s)	719, 733, 752, 754, 812, 1266, 1271, 1307
AclI	AACGTT	1 cut(s)	1944
AclWI	GGATC	8 cut(s)	233, 475, 823, 828, 1010, 1397, 1820, 1964
AcoI	YGGCCR	6 cut(s)	440, 649, 951, 984, 1454, 1816
AcsI	RAATTY	2 cut(s)	1495, 2216
AcvI	CACGTG	1 cut(s)	1241
AcyI	GRCGYC	4 cut(s)	186, 207, 408, 743
AfaI	GTAC	9 cut(s)	83, 143, 884, 1200, 1263, 1633, 1739, 1964, 2165
AflIII	ACRYGT	2 cut(s)	663, 1240
AgeI	ACCGGT	1 cut(s)	1120
AgsI	TTSAA	3 cut(s)	460, 1519, 1618
AjiI	CACGTC	1 cut(s)	666
AjnI	CCWGG	6 cut(s)	342, 381, 393, 488, 1537, 1972
AleI	CACNNNNGTG	3 cut(s)	1082, 1656, 2177
AloI	GAACNNNNNNTCC	4 cut(s)	383, 415, 2050, 2082
AluBI	AGCT	9 cut(s)	35, 161, 456, 550, 567, 603, 911, 1428, 1482
AluI	AGCT	9 cut(s)	35, 161, 456, 550, 567, 603, 911, 1428, 1482
Alw21I	GWGCWC	1 cut(s)	1898
Alw26I	GTCTC	2 cut(s)	946, 1764
AlwI	GGATC	8 cut(s)	233, 475, 823, 828, 1010, 1397, 1820, 1964
AlwNI	CAGNNNCTG	2 cut(s)	138, 388
Ama87I	CYCGRG	1 cut(s)	329
ApaI	GGGCCC	1 cut(s)	1581
ApeKI	GCWGC	3 cut(s)	1556, 1667, 1775
ApoI	RAATTY	2 cut(s)	1495, 2216
AsiGI	ACCGGT	1 cut(s)	1120
AspLEI	GCGC	5 cut(s)	733, 745, 754, 1268, 1955
AsuC2I	CCSGG	7 cut(s)	562, 682, 1034, 1043, 1176, 1848, 2100
AsuHPI	GGTGA	6 cut(s)	907, 1069, 1225, 1385, 1432, 2164
AsuII	TTCGAA	1 cut(s)	1793
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
BaeGI	GKGCMC	2 cut(s)	1581, 1807
BalI	TGGCCA	2 cut(s)	986, 1818
BanI	GGYRCC	2 cut(s)	742, 1100
BanII	GRGCYC	5 cut(s)	363, 562, 1581, 1703, 2264
BarI	GAAGNNNNNNTAC	2 cut(s)	2147, 2179
BauI	CACGAG	1 cut(s)	1485
BbrPI	CACGTG	1 cut(s)	1241
BbsI	GAAGAC	1 cut(s)	2114
Bbv12I	GWGCWC	1 cut(s)	1898
BbvI	GCAGC	3 cut(s)	1543, 1679, 1762
BccI	CCATC	3 cut(s)	733, 1695, 1919
BceAI	ACGGC	7 cut(s)	235, 664, 744, 1168, 1431, 1441, 1823
BciT130I	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
BciVI	GTATCC	1 cut(s)	289
BcnI	CCSGG	7 cut(s)	562, 682, 1034, 1043, 1176, 1848, 2100
BcoDI	GTCTC	2 cut(s)	946, 1764
BfaI	CTAG	2 cut(s)	236, 1602
BfmI	CTRYAG	3 cut(s)	1731, 2061, 2145
BfoI	RGCGCY	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	2054
BfuI	GTATCC	1 cut(s)	289
BglI	GCCNNNNNGGC	2 cut(s)	983, 1585
BglII	AGATCT	1 cut(s)	1512
BmcAI	AGTACT	1 cut(s)	1964
Bme18I	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	666
BmrI	ACTGGG	3 cut(s)	13, 1593, 2258
BmsI	GCATC	2 cut(s)	454, 1762
BmuI	ACTGGG	3 cut(s)	13, 1593, 2258
BpiI	GAAGAC	1 cut(s)	2114
BpmI	CTGGAG	2 cut(s)	365, 1141
Bpu14I	TTCGAA	1 cut(s)	1793
BpuEI	CTTGAG	1 cut(s)	2110
BpuMI	CCSGG	7 cut(s)	562, 682, 1034, 1043, 1176, 1848, 2100
Bsa29I	ATCGAT	1 cut(s)	1914
BsaAI	YACGTR	2 cut(s)	1202, 1241
BsaBI	GATNNNNATC	1 cut(s)	1407
BsaHI	GRCGYC	4 cut(s)	186, 207, 408, 743
BsaWI	WCCGGW	4 cut(s)	431, 1103, 1120, 1189
Bse118I	RCCGGY	5 cut(s)	1079, 1120, 1345, 1462, 1778
Bse1I	ACTGG	4 cut(s)	19, 143, 1588, 2264
Bse3DI	GCAATG	2 cut(s)	1670, 1929
Bse8I	GATNNNNATC	1 cut(s)	1407
BseBI	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
BseCI	ATCGAT	1 cut(s)	1914
BseGI	GGATG	3 cut(s)	744, 1290, 1687
BseJI	GATNNNNATC	1 cut(s)	1407
BseMI	GCAATG	2 cut(s)	1670, 1929
BseMII	CTCAG	2 cut(s)	159, 2013
BseNI	ACTGG	4 cut(s)	19, 143, 1588, 2264
BseRI	GAGGAG	3 cut(s)	106, 157, 1752
BseSI	GKGCMC	2 cut(s)	1581, 1807
BseX3I	CGGCCG	2 cut(s)	951, 1454
BseXI	GCAGC	3 cut(s)	1543, 1679, 1762
BseYI	CCCAGC	1 cut(s)	709
Bsh1236I	CGCG	8 cut(s)	719, 733, 752, 754, 812, 1266, 1271, 1307
Bsh1285I	CGRYCG	2 cut(s)	954, 1457
BshNI	GGYRCC	2 cut(s)	742, 1100
BshTI	ACCGGT	1 cut(s)	1120
BshVI	ATCGAT	1 cut(s)	1914
BsiEI	CGRYCG	2 cut(s)	954, 1457
BsiHKAI	GWGCWC	1 cut(s)	1898
BsiHKCI	CYCGRG	1 cut(s)	329
BslFI	GGGAC	9 cut(s)	513, 653, 670, 739, 905, 1049, 1159, 1450, 2071
BsmAI	GTCTC	2 cut(s)	946, 1764
BsmBI	CGTCTC	1 cut(s)	946
BsmFI	GGGAC	9 cut(s)	513, 653, 670, 739, 905, 1049, 1159, 1450, 2071
BsmI	GAATGC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	1793
Bsp120I	GGGCCC	1 cut(s)	1577
Bsp1286I	GDGCHC	7 cut(s)	363, 562, 1581, 1703, 1807, 1898, 2264
Bsp19I	CCATGG	1 cut(s)	921
BspCNI	CTCAG	2 cut(s)	158, 2012
BspDI	ATCGAT	1 cut(s)	1914
BspFNI	CGCG	8 cut(s)	719, 733, 752, 754, 812, 1266, 1271, 1307
BspHI	TCATGA	2 cut(s)	1005, 1725
BspMAI	CTGCAG	1 cut(s)	2065
BspMI	ACCTGC	1 cut(s)	2054
BspPI	GGATC	8 cut(s)	233, 475, 823, 828, 1010, 1397, 1820, 1964
BspT104I	TTCGAA	1 cut(s)	1793
BspT107I	GGYRCC	2 cut(s)	742, 1100
BsrBI	CCGCTC	4 cut(s)	723, 1311, 1721, 2091
BsrDI	GCAATG	2 cut(s)	1670, 1929
BsrFI	RCCGGY	5 cut(s)	1079, 1120, 1345, 1462, 1778
BsrI	ACTGG	4 cut(s)	19, 143, 1588, 2264
BssAI	RCCGGY	5 cut(s)	1079, 1120, 1345, 1462, 1778
BssNAI	GTATAC	1 cut(s)	1858
BssNI	GRCGYC	4 cut(s)	186, 207, 408, 743
BssSI	CACGAG	1 cut(s)	1485
BssT1I	CCWWGG	3 cut(s)	921, 1026, 2187
Bst1107I	GTATAC	1 cut(s)	1858
Bst2BI	CACGAG	1 cut(s)	1485
Bst2UI	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
Bst6I	CTCTTC	1 cut(s)	1601
BstACI	GRCGYC	4 cut(s)	186, 207, 408, 743
BstAPI	GCANNNNNTGC	1 cut(s)	1167
BstBAI	YACGTR	2 cut(s)	1202, 1241
BstBI	TTCGAA	1 cut(s)	1793
BstC8I	GCNNGC	9 cut(s)	703, 707, 721, 965, 1172, 1309, 1590, 1665, 1898
BstDEI	CTNAG	3 cut(s)	145, 1935, 1999
BstDSI	CCRYGG	7 cut(s)	217, 652, 783, 921, 998, 1269, 1799
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	3 cut(s)	744, 1290, 1687
BstFNI	CGCG	8 cut(s)	719, 733, 752, 754, 812, 1266, 1271, 1307
BstH2I	RGCGCY	1 cut(s)	746
BstHHI	GCGC	5 cut(s)	733, 745, 754, 1268, 1955
BstMAI	GTCTC	2 cut(s)	946, 1764
BstMCI	CGRYCG	2 cut(s)	954, 1457
BstNI	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
BstNSI	RCATGY	1 cut(s)	1953
BstSFI	CTRYAG	3 cut(s)	1731, 2061, 2145
BstSLI	GKGCMC	2 cut(s)	1581, 1807
BstUI	CGCG	8 cut(s)	719, 733, 752, 754, 812, 1266, 1271, 1307
BstV1I	GCAGC	3 cut(s)	1543, 1679, 1762
BstV2I	GAAGAC	1 cut(s)	2114
BstX2I	RGATCY	4 cut(s)	238, 480, 1402, 1512
BstXI	CCANNNNNNTGG	1 cut(s)	709
BstYI	RGATCY	4 cut(s)	238, 480, 1402, 1512
BstZ17I	GTATAC	1 cut(s)	1858
BstZI	CGGCCG	2 cut(s)	951, 1454
Bsu15I	ATCGAT	1 cut(s)	1914
BsuI	GTATCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	1914
BtgI	CCRYGG	7 cut(s)	217, 652, 783, 921, 998, 1269, 1799
BtgZI	GCGATG	1 cut(s)	1887
BtrI	CACGTC	1 cut(s)	666
BtsCI	GGATG	3 cut(s)	744, 1290, 1687
BtsIMutI	CAGTG	3 cut(s)	139, 509, 1581
BveI	ACCTGC	1 cut(s)	2054
Cac8I	GCNNGC	9 cut(s)	703, 707, 721, 965, 1172, 1309, 1590, 1665, 1898
CaiI	CAGNNNCTG	2 cut(s)	138, 388
CciI	TCATGA	2 cut(s)	1005, 1725
CfoI	GCGC	5 cut(s)	733, 745, 754, 1268, 1955
Cfr10I	RCCGGY	5 cut(s)	1079, 1120, 1345, 1462, 1778
Cfr42I	CCGCGG	1 cut(s)	1272
ClaI	ATCGAT	1 cut(s)	1914
CseI	GACGC	2 cut(s)	194, 215
Csp6I	GTAC	9 cut(s)	82, 142, 883, 1199, 1262, 1632, 1738, 1963, 2164
CspAI	ACCGGT	1 cut(s)	1120
CspCI	CAANNNNNGTGG	4 cut(s)	1104, 1139, 1570, 1605
CviQI	GTAC	9 cut(s)	82, 142, 883, 1199, 1262, 1632, 1738, 1963, 2164
DdeI	CTNAG	3 cut(s)	145, 1935, 1999
DinI	GGCGCC	1 cut(s)	744
DrdI	GACNNNNNNGTC	3 cut(s)	413, 434, 664
DseDI	GACNNNNNNGTC	3 cut(s)	413, 434, 664
EaeI	YGGCCR	6 cut(s)	440, 649, 951, 984, 1454, 1816
EagI	CGGCCG	2 cut(s)	951, 1454
Eam1104I	CTCTTC	1 cut(s)	1601
EarI	CTCTTC	1 cut(s)	1601
EciI	GGCGGA	3 cut(s)	612, 865, 1343
EclXI	CGGCCG	2 cut(s)	951, 1454
Eco130I	CCWWGG	3 cut(s)	921, 1026, 2187
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	5 cut(s)	363, 562, 1581, 1703, 2264
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
Eco52I	CGGCCG	2 cut(s)	951, 1454
Eco72I	CACGTG	1 cut(s)	1241
Eco88I	CYCGRG	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoO109I	RGGNCCY	3 cut(s)	385, 657, 975
EcoRII	CCWGG	6 cut(s)	342, 381, 393, 488, 1537, 1972
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	3 cut(s)	921, 1026, 2187
EcoT38I	GRGCYC	5 cut(s)	363, 562, 1581, 1703, 2264
EgeI	GGCGCC	1 cut(s)	744
EheI	GGCGCC	1 cut(s)	744
ErhI	CCWWGG	3 cut(s)	921, 1026, 2187
Esp3I	CGTCTC	1 cut(s)	946
FaqI	GGGAC	9 cut(s)	513, 653, 670, 739, 905, 1049, 1159, 1450, 2071
FauI	CCCGC	8 cut(s)	460, 489, 716, 747, 805, 863, 956, 1264
FblI	GTMKAC	1 cut(s)	1857
FokI	GGATG	3 cut(s)	751, 1297, 1674
FriOI	GRGCYC	5 cut(s)	363, 562, 1581, 1703, 2264
FspBI	CTAG	2 cut(s)	236, 1602
FspI	TGCGCA	1 cut(s)	1954
GlaI	GCGC	5 cut(s)	732, 744, 753, 1267, 1954
GsaI	CCCAGC	1 cut(s)	713
GsuI	CTGGAG	2 cut(s)	365, 1141
HaeII	RGCGCY	1 cut(s)	746
HgaI	GACGC	2 cut(s)	194, 215
HhaI	GCGC	5 cut(s)	733, 745, 754, 1268, 1955
Hin1I	GRCGYC	4 cut(s)	186, 207, 408, 743
Hin6I	GCGC	5 cut(s)	731, 743, 752, 1266, 1953
HinP1I	GCGC	5 cut(s)	731, 743, 752, 1266, 1953
HincII	GTYRAC	2 cut(s)	1234, 1546
HindII	GTYRAC	2 cut(s)	1234, 1546
HpaI	GTTAAC	2 cut(s)	1234, 1546
HphI	GGTGA	6 cut(s)	907, 1069, 1225, 1385, 1432, 2164
Hpy166II	GTNNAC	7 cut(s)	1077, 1135, 1234, 1546, 1740, 1858, 2166
Hpy188III	TCNNGA	7 cut(s)	236, 242, 513, 1006, 1516, 1726, 2039
Hpy8I	GTNNAC	7 cut(s)	1077, 1135, 1234, 1546, 1740, 1858, 2166
Hpy99I	CGWCG	5 cut(s)	209, 419, 839, 1417, 1462
HpyAV	CCTTC	2 cut(s)	1243, 2001
HpyCH4IV	ACGT	6 cut(s)	80, 408, 665, 1201, 1240, 1944
HpyCH4V	TGCA	9 cut(s)	540, 1394, 1559, 1667, 1709, 1886, 2063, 2141, 2276
HpyF3I	CTNAG	3 cut(s)	145, 1935, 1999
HpySE526I	ACGT	6 cut(s)	80, 408, 665, 1201, 1240, 1944
Hsp92I	GRCGYC	4 cut(s)	186, 207, 408, 743
HspAI	GCGC	5 cut(s)	731, 743, 752, 1266, 1953
KasI	GGCGCC	1 cut(s)	742
KflI	GGGWCCC	1 cut(s)	657
KspAI	GTTAAC	2 cut(s)	1234, 1546
KspI	CCGCGG	1 cut(s)	1272
LmnI	GCTCC	9 cut(s)	384, 515, 557, 564, 908, 1016, 1160, 1188, 1698
Lsp1109I	GCAGC	3 cut(s)	1543, 1679, 1762
LweI	GCATC	2 cut(s)	454, 1762
MaeI	CTAG	2 cut(s)	236, 1602
MaeII	ACGT	6 cut(s)	80, 408, 665, 1201, 1240, 1944
MbiI	CCGCTC	4 cut(s)	723, 1311, 1721, 2091
MboII	GAAGA	5 cut(s)	622, 1618, 2119, 2167, 2170
MfeI	CAATTG	1 cut(s)	1693
MflI	RGATCY	4 cut(s)	238, 480, 1402, 1512
MhlI	GDGCHC	7 cut(s)	363, 562, 1581, 1703, 1807, 1898, 2264
MlsI	TGGCCA	2 cut(s)	986, 1818
MluCI	AATT	5 cut(s)	1495, 1693, 1710, 2042, 2216
MluNI	TGGCCA	2 cut(s)	986, 1818
Mly113I	GGCGCC	1 cut(s)	743
MlyI	GAGTC	9 cut(s)	167, 173, 444, 455, 518, 638, 1202, 1592, 1618
MmeI	TCCRAC	5 cut(s)	249, 397, 994, 1210, 1436
Mox20I	TGGCCA	2 cut(s)	986, 1818
MscI	TGGCCA	2 cut(s)	986, 1818
MseI	TTAA	6 cut(s)	38, 1233, 1545, 1713, 2118, 2256
MslI	CAYNNNNRTG	6 cut(s)	920, 1082, 1106, 1656, 1891, 2177
Msp20I	TGGCCA	2 cut(s)	986, 1818
MspA1I	CMGCKG	2 cut(s)	1098, 1271
MunI	CAATTG	1 cut(s)	1693
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
MvnI	CGCG	8 cut(s)	719, 733, 752, 754, 812, 1266, 1271, 1307
NarI	GGCGCC	1 cut(s)	743
NciI	CCSGG	7 cut(s)	562, 682, 1034, 1043, 1176, 1848, 2100
NcoI	CCATGG	1 cut(s)	921
NmeAIII	GCCGAG	3 cut(s)	652, 660, 929
NmuCI	GTSAC	6 cut(s)	134, 1086, 1334, 1373, 1840, 2170
NsbI	TGCGCA	1 cut(s)	1954
NspI	RCATGY	1 cut(s)	1953
NspV	TTCGAA	1 cut(s)	1793
OliI	CACNNNNGTG	3 cut(s)	1082, 1656, 2177
PagI	TCATGA	2 cut(s)	1005, 1725
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 692
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	272, 1408, 1795
PfoI	TCCNGGA	2 cut(s)	381, 1972
PinAI	ACCGGT	1 cut(s)	1120
PleI	GAGTC	9 cut(s)	167, 173, 443, 454, 517, 637, 1201, 1592, 1617
PluTI	GGCGCC	1 cut(s)	746
PmaCI	CACGTG	1 cut(s)	1241
PmlI	CACGTG	1 cut(s)	1241
PpsI	GAGTC	9 cut(s)	167, 173, 443, 454, 517, 637, 1201, 1592, 1617
Ppu21I	YACGTR	2 cut(s)	1202, 1241
PpuMI	RGGWCCY	2 cut(s)	385, 657
Psp1406I	AACGTT	1 cut(s)	1944
Psp5II	RGGWCCY	2 cut(s)	385, 657
Psp6I	CCWGG	6 cut(s)	342, 381, 393, 488, 1537, 1972
PspCI	CACGTG	1 cut(s)	1241
PspFI	CCCAGC	1 cut(s)	709
PspGI	CCWGG	6 cut(s)	342, 381, 393, 488, 1537, 1972
PspOMI	GGGCCC	1 cut(s)	1577
PspPPI	RGGWCCY	2 cut(s)	385, 657
PstI	CTGCAG	1 cut(s)	2065
PstNI	CAGNNNCTG	2 cut(s)	138, 388
PsuI	RGATCY	4 cut(s)	238, 480, 1402, 1512
RsaI	GTAC	9 cut(s)	83, 143, 884, 1200, 1263, 1633, 1739, 1964, 2165
RsaNI	GTAC	9 cut(s)	82, 142, 883, 1199, 1262, 1632, 1738, 1963, 2164
RseI	CAYNNNNRTG	6 cut(s)	920, 1082, 1106, 1656, 1891, 2177
SacII	CCGCGG	1 cut(s)	1272
SaqAI	TTAA	6 cut(s)	38, 1233, 1545, 1713, 2118, 2256
ScaI	AGTACT	1 cut(s)	1964
SchI	GAGTC	9 cut(s)	167, 173, 444, 455, 518, 638, 1202, 1592, 1618
SduI	GDGCHC	7 cut(s)	363, 562, 1581, 1703, 1807, 1898, 2264
SfaNI	GCATC	2 cut(s)	454, 1762
SfcI	CTRYAG	3 cut(s)	1731, 2061, 2145
SfiI	GGCCNNNNNGGCC	1 cut(s)	983
SfoI	GGCGCC	1 cut(s)	744
Sfr303I	CCGCGG	1 cut(s)	1272
SfuI	TTCGAA	1 cut(s)	1793
SgrAI	CRCCGGYG	1 cut(s)	1079
SgrBI	CCGCGG	1 cut(s)	1272
SinI	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
SmiMI	CAYNNNNRTG	6 cut(s)	920, 1082, 1106, 1656, 1891, 2177
SmlI	CTYRAG	1 cut(s)	2125
SmoI	CTYRAG	1 cut(s)	2125
Sse9I	AATT	5 cut(s)	1495, 1693, 1710, 2042, 2216
SseBI	AGGCCT	1 cut(s)	398
SspDI	GGCGCC	1 cut(s)	742
SspMI	CTAG	2 cut(s)	236, 1602
StuI	AGGCCT	1 cut(s)	398
StyI	CCWWGG	3 cut(s)	921, 1026, 2187
TaiI	ACGT	6 cut(s)	83, 411, 668, 1204, 1243, 1947
TaqI	TCGA	9 cut(s)	291, 834, 1793, 1824, 1832, 1868, 1914, 2038, 2225
TasI	AATT	5 cut(s)	1495, 1693, 1710, 2042, 2216
TatI	WGTACW	2 cut(s)	1962, 2163
TfiI	GAWTC	3 cut(s)	272, 1408, 1795
Tru1I	TTAA	6 cut(s)	38, 1233, 1545, 1713, 2118, 2256
Tru9I	TTAA	6 cut(s)	38, 1233, 1545, 1713, 2118, 2256
TscAI	CASTG	3 cut(s)	139, 509, 1588
TseFI	GTSAC	6 cut(s)	134, 1086, 1334, 1373, 1840, 2170
TseI	GCWGC	3 cut(s)	1556, 1667, 1775
Tsp45I	GTSAC	6 cut(s)	134, 1086, 1334, 1373, 1840, 2170
TspDTI	ATGAA	3 cut(s)	110, 623, 1983
TspGWI	ACGGA	4 cut(s)	52, 852, 1757, 1788
TspRI	CASTG	3 cut(s)	139, 509, 1588
VpaK11BI	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	1495, 2216
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	1953
XmiI	GTMKAC	1 cut(s)	1857
XspI	CTAG	2 cut(s)	236, 1602
ZraI	GACGTC	1 cut(s)	409
ZrmI	AGTACT	1 cut(s)	1964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.