Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013828

Physical Location & Seq

Genomic Coordinates Forward (+)

8186626 .. 8189161

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG098800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2292 bp

ATGGCCTCCTCCGAGGCCCAGTTCTGGTTCGTAGCTTTAACACTTGTTCTGCCATGTCTATCCGTAACCGCCAAACAGACGTACATAGTTCAGATGAAGCACCATTCCAAACCCTCCTCATTCGCCACCCACAGTGACTGGTACTCCGCCAACCTCCAAGCTCTCTCCTCTGACTCTGACTCTGACGCCCTCCTCTACACCTACGACGCCGCCTACCACGGCTTCGCCGCTTCTCTAGATCCCGAACAGGCCGACACTCTGCGGCAGTCGGAATCTGTAATCGGGGTATTCGAGGATACTTTATACAACCTCCACACCACACGAACACCCGAGTTTCTGGGCCTGGAAACCGCTAACGGGCTCTGGGCCGGACACTCGCTCCAGGACCTGAACCAGGCCTCCAATGACGTCATCGTCGGAGTGCTGGACACCGGAGTCTGGCCTGAGTCCAAGAGCTTCAACGATGCGGGAATGCCAGAGATCCCGTCCAGGTGGCGGGGACAGTGCGAGTCGGGAACCGATTTCAGCCCCTCTCTCTGCAACAAGAAGCTGATCGGAGCCCGGAGCTTTTCTAAAGGCTACCACATGGCCTCCGGCGGAAGCTACATGAAGAAACCGAAAGAGGCCGAGTCGCCGAGGGACCAAGACGGCCACGGGACCCACACGTCCAGCACTGCCGCCGGGTCGCTGGTGGCGAACGCCAGCCTGCTCGGTTACGCGAGCGGGACGGCGCGTGGGATGGCGCCTCACGCGCGGGTTGCCACCTACAAGGTCTGCTGGACCACGGGTTGCTTCGGGTCCGATATCCTTGCGGGTATGGATCGGGCCATCCTCGACGGAGTTGATGTGCTGTCGCTCTCTTTGGGCGGCGGGTCCGCCCCGTACTTTAGGGACACAATCGCAATAGGAGCTTTCACCGCCATGGAGAGGGGCATTTTCGTCTCTTGCTCGGCCGGAAATAGCGGGCCAAGTAGGGCCTCATTGGCCAACACAGCCCCGTGGATCATGACGGTTGGAGCCGGAACCTTGGACCGGGACTTCCCGGCTTTCGCTTTGCTCGGAAACCAAAACCGGTTCACCGGCGTGTCACTTTACAGCGGCACCGGAATGGGGTCAAAACCGGTGGGGTTGGTTTACAACAAGGGGACTAACGGCTCTAGCAATCTGTGCTTGCCCGGTTCGCTCCAACCGGAGTCGGTACGTGGGAAAGTGGTGATTTGCGACAGGGGAGTTAACGCACGTGTGGAGAAAGGTGGAGTTGTACGCGCCGCGGGTGGGGTTGGGATGATACTCGCCAACACCGCCGCGAGCGGAGAGGAAATGGTGGCGGACAGTCACTTGTTACCGGCTGTTGCGGTTGGGAGGAAAGTGGGTGACTTGATAAGGCAGTATGCACAGTCAGATCCGAATCCGACGGCGGTGATTAGCTTTGGTGGGACGGTGCTCAATGTGCGGCCGTCGCCGGTTGTGGCGGCGTTTAGCTCTCGTGGGCCAAATTTGGTTACTCCCCAGATCTTGAAGCCCGATGTGATTGGTCCAGGGGTTAACATCTTGGCTGCATGGTCAGAGGCTATTGGGCCCACTGGGCTTGCGGAGGACTCTAGGAAGAGTCAGTTCAACATCATGTCAGGTACATCTATGTCATGCCCACACATAAGTGGGCTTGCAGCATTGCTCAAAGCGGCCCATCCCAATTGGAGCCCAAGTGCAATCAAATCCGCTCTCATGACTACAGCGTACACACATGACAACACCATGTCTCCTCTCCGGGATGCTGCCGGTGGCACATTTTCGAATCCGTGGGCACATGGTTCTGGCCATGTCGATCCCTCAAAAGCCGTCACGCCGGGTCTTGTATACGACATTTCGAGCGATGACTATGTTGCATTTTTGTGCTCGCTGGACTACACCATCGATCATGTCCAAGCCATTGCTAAGAGAAACGTTACATGCGCAAGAAAGTACTCTGATCCTGGACAACTCAACTACCCTTCATTCTCAGTTGTGTTTGGGAACAAGAGGGTTGTGAGATACAGTCGAGAATTGACAAATGTAGGGACTGCAGGTTCTTTATACAAGGTCATTGTGAGCGGACCACCCGGAGTGAAGACTATTGTTAAACCCTCAAGGCTTTTCTTTGCAACCGTAGGGGAGAAGAAGAAGTACACAGTCACCTTTGTGTCTGCCAAGGGCGGCATTAGAACATCAAGGTCAGAATTTGGTTCGATCATGTGGGCAAACCCCCTACACCTCGTTAAGAGCCCAGTTGCTTTTGCATGGACGCTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004252 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005911 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0009505 GO:0009506 GO:0012505 GO:0016787 GO:0017171 GO:0019538 GO:0030054 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I9 PA Peptidase_S8

Protein Analysis

763

Amino Acids

80.56

Weight (kDa)

8.58

Isoelectric Point (pI)

35.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	27 - 105	7.8e-19	Peptidase inhibitor I9
Peptidase_S8	PF00082	135 - 583	1.2e-45	Subtilase family
PA	PF02225	378 - 460	5.9e-12	PA domain
fn3_6	PF17766	660 - 757	6.6e-23	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G05920
fragaria_vesca	FvH4_1g08840
malus_domestica	MD02G1093500.v1.1 MD15G1218800.v1.1
prunus_persica	Prupe.7G197100_v2.0.a1
pyrus_communis	pycom02g07370 pycom15g19400
rosa_chinensis	RchiOBHm_Chr2g0095311
rosa_laevigata	RLG00000016553
rosa_multiflora	Rmu_ssc0000183.1_g000049
rosa_roxburghii	Rroxscaffold_2G00146490
rosa_rugosa	Rorug02G0049200
rosa_samantha	Rh2AG097600 Rh2BG098800 Rh2CG100900 Rh2DG098500
rosa_wichuraiana	Rw2G007360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	413, 434, 664
AatII	GACGTC	1 cut(s)	411
Acc16I	TGCGCA	1 cut(s)	1954
Acc36I	ACCTGC	1 cut(s)	2054
AccB1I	GGYRCC	2 cut(s)	742, 1100
AccBSI	CCGCTC	4 cut(s)	723, 1311, 1721, 2091
AccI	GTMKAC	1 cut(s)	1857
AccII	CGCG	7 cut(s)	719, 733, 752, 754, 1266, 1271, 1307
AclI	AACGTT	1 cut(s)	1944
AclWI	GGATC	7 cut(s)	233, 475, 828, 1010, 1397, 1820, 1964
AcoI	YGGCCR	5 cut(s)	649, 951, 984, 1454, 1816
AcsI	RAATTY	2 cut(s)	1495, 2216
AcvI	CACGTG	1 cut(s)	1241
AcyI	GRCGYC	4 cut(s)	186, 207, 408, 743
AfaI	GTAC	9 cut(s)	83, 143, 884, 1200, 1263, 1633, 1739, 1964, 2165
AfiI	CCNNNNNNNGG	9 cut(s)	24, 357, 394, 438, 495, 927, 1032, 1110, 1275
AflIII	ACRYGT	2 cut(s)	663, 1240
AgeI	ACCGGT	2 cut(s)	1071, 1120
AgsI	TTSAA	3 cut(s)	460, 1519, 1618
AjiI	CACGTC	1 cut(s)	666
AjnI	CCWGG	6 cut(s)	342, 381, 393, 488, 1537, 1972
AleI	CACNNNNGTG	3 cut(s)	1082, 1656, 2177
AloI	GAACNNNNNNTCC	4 cut(s)	383, 415, 2050, 2082
AluBI	AGCT	9 cut(s)	35, 161, 456, 550, 567, 603, 911, 1428, 1482
AluI	AGCT	9 cut(s)	35, 161, 456, 550, 567, 603, 911, 1428, 1482
Alw21I	GWGCWC	2 cut(s)	1446, 1898
Alw26I	GTCTC	2 cut(s)	946, 1764
AlwI	GGATC	7 cut(s)	233, 475, 828, 1010, 1397, 1820, 1964
AlwNI	CAGNNNCTG	2 cut(s)	138, 388
Ama87I	CYCGRG	1 cut(s)	329
ApaI	GGGCCC	1 cut(s)	1581
ApeKI	GCWGC	3 cut(s)	1556, 1667, 1775
ApoI	RAATTY	2 cut(s)	1495, 2216
AsiGI	ACCGGT	2 cut(s)	1071, 1120
AspLEI	GCGC	5 cut(s)	733, 745, 754, 1268, 1955
AsuC2I	CCSGG	8 cut(s)	562, 682, 1034, 1043, 1176, 1769, 1848, 2100
AsuHPI	GGTGA	6 cut(s)	907, 1069, 1225, 1385, 1432, 2164
AsuII	TTCGAA	1 cut(s)	1793
AvaI	CYCGRG	1 cut(s)	329
AvaII	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
BaeGI	GKGCMC	2 cut(s)	1581, 1807
BalI	TGGCCA	2 cut(s)	986, 1818
BanI	GGYRCC	2 cut(s)	742, 1100
BanII	GRGCYC	5 cut(s)	363, 562, 1581, 1703, 2264
BarI	GAAGNNNNNNTAC	2 cut(s)	2147, 2179
BauI	CACGAG	1 cut(s)	1485
BbrPI	CACGTG	1 cut(s)	1241
BbsI	GAAGAC	1 cut(s)	2114
Bbv12I	GWGCWC	2 cut(s)	1446, 1898
BbvI	GCAGC	3 cut(s)	1543, 1679, 1762
BccI	CCATC	4 cut(s)	733, 836, 1695, 1919
BceAI	ACGGC	7 cut(s)	235, 664, 744, 1168, 1431, 1441, 1823
BcgI	CGANNNNNNTGC	2 cut(s)	791, 825
BciT130I	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
BciVI	GTATCC	1 cut(s)	289
BcnI	CCSGG	8 cut(s)	562, 682, 1034, 1043, 1176, 1769, 1848, 2100
BcoDI	GTCTC	2 cut(s)	946, 1764
BfaI	CTAG	3 cut(s)	236, 1158, 1602
BfmI	CTRYAG	2 cut(s)	1731, 2061
BfoI	RGCGCY	1 cut(s)	746
BfuAI	ACCTGC	1 cut(s)	2054
BfuI	GTATCC	1 cut(s)	289
BglI	GCCNNNNNGGC	2 cut(s)	983, 1585
BglII	AGATCT	1 cut(s)	1512
BmcAI	AGTACT	1 cut(s)	1964
Bme18I	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
BmeT110I	CYCGRG	1 cut(s)	329
BmgBI	CACGTC	1 cut(s)	666
BmrI	ACTGGG	3 cut(s)	13, 1593, 2258
BmsI	GCATC	2 cut(s)	454, 1762
BmuI	ACTGGG	3 cut(s)	13, 1593, 2258
BpiI	GAAGAC	1 cut(s)	2114
BpmI	CTGGAG	1 cut(s)	365
Bpu14I	TTCGAA	1 cut(s)	1793
BpuEI	CTTGAG	1 cut(s)	2110
BpuMI	CCSGG	8 cut(s)	562, 682, 1034, 1043, 1176, 1769, 1848, 2100
Bsa29I	ATCGAT	1 cut(s)	1914
BsaAI	YACGTR	2 cut(s)	1202, 1241
BsaBI	GATNNNNATC	1 cut(s)	1407
BsaHI	GRCGYC	4 cut(s)	186, 207, 408, 743
BsaWI	WCCGGW	5 cut(s)	431, 1071, 1103, 1120, 1189
Bsc4I	CCNNNNNNNGG	9 cut(s)	24, 357, 394, 438, 495, 927, 1032, 1110, 1275
Bse118I	RCCGGY	6 cut(s)	1071, 1079, 1120, 1345, 1462, 1778
Bse1I	ACTGG	4 cut(s)	19, 143, 1588, 2264
Bse3DI	GCAATG	2 cut(s)	1670, 1929
Bse8I	GATNNNNATC	1 cut(s)	1407
BseBI	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
BseCI	ATCGAT	1 cut(s)	1914
BseGI	GGATG	5 cut(s)	744, 828, 1290, 1687, 1777
BseJI	GATNNNNATC	1 cut(s)	1407
BseLI	CCNNNNNNNGG	9 cut(s)	24, 357, 394, 438, 495, 927, 1032, 1110, 1275
BseMI	GCAATG	2 cut(s)	1670, 1929
BseMII	CTCAG	2 cut(s)	435, 2013
BseNI	ACTGG	4 cut(s)	19, 143, 1588, 2264
BseRI	GAGGAG	4 cut(s)	106, 157, 182, 1752
BseSI	GKGCMC	2 cut(s)	1581, 1807
BseX3I	CGGCCG	2 cut(s)	951, 1454
BseXI	GCAGC	3 cut(s)	1543, 1679, 1762
Bsh1236I	CGCG	7 cut(s)	719, 733, 752, 754, 1266, 1271, 1307
Bsh1285I	CGRYCG	2 cut(s)	954, 1457
BshNI	GGYRCC	2 cut(s)	742, 1100
BshTI	ACCGGT	2 cut(s)	1071, 1120
BshVI	ATCGAT	1 cut(s)	1914
BsiEI	CGRYCG	2 cut(s)	954, 1457
BsiHKAI	GWGCWC	2 cut(s)	1446, 1898
BsiHKCI	CYCGRG	1 cut(s)	329
BslFI	GGGAC	9 cut(s)	513, 653, 670, 739, 905, 1049, 1159, 1450, 2071
BslI	CCNNNNNNNGG	9 cut(s)	24, 357, 394, 438, 495, 927, 1032, 1110, 1275
BsmAI	GTCTC	2 cut(s)	946, 1764
BsmBI	CGTCTC	1 cut(s)	946
BsmFI	GGGAC	9 cut(s)	513, 653, 670, 739, 905, 1049, 1159, 1450, 2071
BsmI	GAATGC	1 cut(s)	477
BsoBI	CYCGRG	1 cut(s)	329
Bsp119I	TTCGAA	1 cut(s)	1793
Bsp120I	GGGCCC	1 cut(s)	1577
Bsp1286I	GDGCHC	8 cut(s)	363, 562, 1446, 1581, 1703, 1807, 1898, 2264
Bsp19I	CCATGG	1 cut(s)	921
BspCNI	CTCAG	2 cut(s)	436, 2012
BspDI	ATCGAT	1 cut(s)	1914
BspFNI	CGCG	7 cut(s)	719, 733, 752, 754, 1266, 1271, 1307
BspHI	TCATGA	2 cut(s)	1005, 1725
BspMAI	CTGCAG	1 cut(s)	2065
BspMI	ACCTGC	1 cut(s)	2054
BspPI	GGATC	7 cut(s)	233, 475, 828, 1010, 1397, 1820, 1964
BspT104I	TTCGAA	1 cut(s)	1793
BspT107I	GGYRCC	2 cut(s)	742, 1100
BsrBI	CCGCTC	4 cut(s)	723, 1311, 1721, 2091
BsrDI	GCAATG	2 cut(s)	1670, 1929
BsrFI	RCCGGY	6 cut(s)	1071, 1079, 1120, 1345, 1462, 1778
BsrI	ACTGG	4 cut(s)	19, 143, 1588, 2264
BssAI	RCCGGY	6 cut(s)	1071, 1079, 1120, 1345, 1462, 1778
BssNAI	GTATAC	1 cut(s)	1858
BssNI	GRCGYC	4 cut(s)	186, 207, 408, 743
BssSI	CACGAG	1 cut(s)	1485
BssT1I	CCWWGG	3 cut(s)	921, 1026, 2187
Bst1107I	GTATAC	1 cut(s)	1858
Bst2BI	CACGAG	1 cut(s)	1485
Bst2UI	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
Bst4CI	ACNGT	9 cut(s)	134, 504, 1012, 1334, 1398, 1441, 2036, 2146, 2170
Bst6I	CTCTTC	1 cut(s)	1601
BstACI	GRCGYC	4 cut(s)	186, 207, 408, 743
BstAPI	GCANNNNNTGC	1 cut(s)	1167
BstBAI	YACGTR	2 cut(s)	1202, 1241
BstBI	TTCGAA	1 cut(s)	1793
BstC8I	GCNNGC	9 cut(s)	703, 707, 721, 965, 1172, 1309, 1590, 1665, 1898
BstDEI	CTNAG	3 cut(s)	444, 1935, 1999
BstDSI	CCRYGG	7 cut(s)	217, 652, 783, 921, 998, 1269, 1799
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	5 cut(s)	744, 828, 1290, 1687, 1777
BstFNI	CGCG	7 cut(s)	719, 733, 752, 754, 1266, 1271, 1307
BstH2I	RGCGCY	1 cut(s)	746
BstHHI	GCGC	5 cut(s)	733, 745, 754, 1268, 1955
BstMAI	GTCTC	2 cut(s)	946, 1764
BstMCI	CGRYCG	2 cut(s)	954, 1457
BstNI	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
BstNSI	RCATGY	1 cut(s)	1953
BstSFI	CTRYAG	2 cut(s)	1731, 2061
BstSLI	GKGCMC	2 cut(s)	1581, 1807
BstUI	CGCG	7 cut(s)	719, 733, 752, 754, 1266, 1271, 1307
BstV1I	GCAGC	3 cut(s)	1543, 1679, 1762
BstV2I	GAAGAC	1 cut(s)	2114
BstX2I	RGATCY	4 cut(s)	238, 480, 1402, 1512
BstYI	RGATCY	4 cut(s)	238, 480, 1402, 1512
BstZ17I	GTATAC	1 cut(s)	1858
BstZI	CGGCCG	2 cut(s)	951, 1454
Bsu15I	ATCGAT	1 cut(s)	1914
BsuI	GTATCC	1 cut(s)	289
BsuTUI	ATCGAT	1 cut(s)	1914
BtgI	CCRYGG	7 cut(s)	217, 652, 783, 921, 998, 1269, 1799
BtgZI	GCGATG	1 cut(s)	1887
BtrI	CACGTC	1 cut(s)	666
BtsCI	GGATG	5 cut(s)	744, 828, 1290, 1687, 1777
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	4 cut(s)	139, 509, 672, 1581
BveI	ACCTGC	1 cut(s)	2054
Cac8I	GCNNGC	9 cut(s)	703, 707, 721, 965, 1172, 1309, 1590, 1665, 1898
CaiI	CAGNNNCTG	2 cut(s)	138, 388
CciI	TCATGA	2 cut(s)	1005, 1725
CfoI	GCGC	5 cut(s)	733, 745, 754, 1268, 1955
Cfr10I	RCCGGY	6 cut(s)	1071, 1079, 1120, 1345, 1462, 1778
Cfr42I	CCGCGG	1 cut(s)	1272
ClaI	ATCGAT	1 cut(s)	1914
CseI	GACGC	2 cut(s)	194, 215
Csp6I	GTAC	9 cut(s)	82, 142, 883, 1199, 1262, 1632, 1738, 1963, 2164
CspAI	ACCGGT	2 cut(s)	1071, 1120
CspCI	CAANNNNNGTGG	4 cut(s)	1104, 1139, 1570, 1605
CviQI	GTAC	9 cut(s)	82, 142, 883, 1199, 1262, 1632, 1738, 1963, 2164
DdeI	CTNAG	3 cut(s)	444, 1935, 1999
DinI	GGCGCC	1 cut(s)	744
DrdI	GACNNNNNNGTC	3 cut(s)	413, 434, 664
DseDI	GACNNNNNNGTC	3 cut(s)	413, 434, 664
EaeI	YGGCCR	5 cut(s)	649, 951, 984, 1454, 1816
EagI	CGGCCG	2 cut(s)	951, 1454
Eam1104I	CTCTTC	1 cut(s)	1601
EarI	CTCTTC	1 cut(s)	1601
EciI	GGCGGA	4 cut(s)	136, 612, 865, 1343
EclXI	CGGCCG	2 cut(s)	951, 1454
Eco130I	CCWWGG	3 cut(s)	921, 1026, 2187
Eco147I	AGGCCT	1 cut(s)	398
Eco24I	GRGCYC	5 cut(s)	363, 562, 1581, 1703, 2264
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
Eco52I	CGGCCG	2 cut(s)	951, 1454
Eco72I	CACGTG	1 cut(s)	1241
Eco88I	CYCGRG	1 cut(s)	329
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoO109I	RGGNCCY	3 cut(s)	385, 657, 975
EcoRII	CCWGG	6 cut(s)	342, 381, 393, 488, 1537, 1972
EcoRV	GATATC	1 cut(s)	805
EcoT14I	CCWWGG	3 cut(s)	921, 1026, 2187
EcoT38I	GRGCYC	5 cut(s)	363, 562, 1581, 1703, 2264
EgeI	GGCGCC	1 cut(s)	744
EheI	GGCGCC	1 cut(s)	744
ErhI	CCWWGG	3 cut(s)	921, 1026, 2187
Esp3I	CGTCTC	1 cut(s)	946
FaqI	GGGAC	9 cut(s)	513, 653, 670, 739, 905, 1049, 1159, 1450, 2071
FauI	CCCGC	8 cut(s)	460, 489, 716, 747, 805, 863, 956, 1264
FblI	GTMKAC	1 cut(s)	1857
FokI	GGATG	5 cut(s)	751, 815, 1297, 1674, 1784
FriOI	GRGCYC	5 cut(s)	363, 562, 1581, 1703, 2264
FspBI	CTAG	3 cut(s)	236, 1158, 1602
FspI	TGCGCA	1 cut(s)	1954
GlaI	GCGC	5 cut(s)	732, 744, 753, 1267, 1954
GsuI	CTGGAG	1 cut(s)	365
HaeII	RGCGCY	1 cut(s)	746
HgaI	GACGC	2 cut(s)	194, 215
HhaI	GCGC	5 cut(s)	733, 745, 754, 1268, 1955
Hin1I	GRCGYC	4 cut(s)	186, 207, 408, 743
Hin6I	GCGC	5 cut(s)	731, 743, 752, 1266, 1953
HinP1I	GCGC	5 cut(s)	731, 743, 752, 1266, 1953
HincII	GTYRAC	2 cut(s)	1234, 1546
HindII	GTYRAC	2 cut(s)	1234, 1546
HpaI	GTTAAC	2 cut(s)	1234, 1546
HphI	GGTGA	6 cut(s)	907, 1069, 1225, 1385, 1432, 2164
Hpy166II	GTNNAC	7 cut(s)	1077, 1135, 1234, 1546, 1740, 1858, 2166
Hpy188III	TCNNGA	7 cut(s)	236, 242, 513, 1006, 1516, 1726, 2039
Hpy8I	GTNNAC	7 cut(s)	1077, 1135, 1234, 1546, 1740, 1858, 2166
Hpy99I	CGWCG	5 cut(s)	209, 419, 839, 1417, 1462
HpyAV	CCTTC	1 cut(s)	2001
HpyCH4III	ACNGT	9 cut(s)	134, 504, 1012, 1334, 1398, 1441, 2036, 2146, 2170
HpyCH4IV	ACGT	6 cut(s)	80, 408, 665, 1201, 1240, 1944
HpyCH4V	TGCA	9 cut(s)	540, 1394, 1559, 1667, 1709, 1886, 2063, 2141, 2276
HpyF3I	CTNAG	3 cut(s)	444, 1935, 1999
HpySE526I	ACGT	6 cut(s)	80, 408, 665, 1201, 1240, 1944
Hsp92I	GRCGYC	4 cut(s)	186, 207, 408, 743
HspAI	GCGC	5 cut(s)	731, 743, 752, 1266, 1953
KasI	GGCGCC	1 cut(s)	742
KflI	GGGWCCC	1 cut(s)	657
KspAI	GTTAAC	2 cut(s)	1234, 1546
KspI	CCGCGG	1 cut(s)	1272
LmnI	GCTCC	7 cut(s)	384, 557, 564, 908, 1016, 1188, 1698
Lsp1109I	GCAGC	3 cut(s)	1543, 1679, 1762
LweI	GCATC	2 cut(s)	454, 1762
MaeI	CTAG	3 cut(s)	236, 1158, 1602
MaeII	ACGT	6 cut(s)	80, 408, 665, 1201, 1240, 1944
MbiI	CCGCTC	4 cut(s)	723, 1311, 1721, 2091
MboII	GAAGA	5 cut(s)	622, 1618, 2119, 2167, 2170
MfeI	CAATTG	1 cut(s)	1693
MflI	RGATCY	4 cut(s)	238, 480, 1402, 1512
MhlI	GDGCHC	8 cut(s)	363, 562, 1446, 1581, 1703, 1807, 1898, 2264
MlsI	TGGCCA	2 cut(s)	986, 1818
MluCI	AATT	4 cut(s)	1495, 1693, 2042, 2216
MluNI	TGGCCA	2 cut(s)	986, 1818
Mly113I	GGCGCC	1 cut(s)	743
MlyI	GAGTC	9 cut(s)	167, 173, 444, 455, 518, 638, 1202, 1592, 1618
MmeI	TCCRAC	5 cut(s)	249, 397, 994, 1210, 1436
Mox20I	TGGCCA	2 cut(s)	986, 1818
MscI	TGGCCA	2 cut(s)	986, 1818
MseI	TTAA	5 cut(s)	38, 1233, 1545, 2118, 2256
MslI	CAYNNNNRTG	6 cut(s)	920, 1082, 1106, 1656, 1891, 2177
Msp20I	TGGCCA	2 cut(s)	986, 1818
MspA1I	CMGCKG	2 cut(s)	1098, 1271
MunI	CAATTG	1 cut(s)	1693
Mva1269I	GAATGC	1 cut(s)	477
MvaI	CCWGG	6 cut(s)	344, 383, 395, 490, 1539, 1974
MvnI	CGCG	7 cut(s)	719, 733, 752, 754, 1266, 1271, 1307
NarI	GGCGCC	1 cut(s)	743
NciI	CCSGG	8 cut(s)	562, 682, 1034, 1043, 1176, 1769, 1848, 2100
NcoI	CCATGG	1 cut(s)	921
NmeAIII	GCCGAG	3 cut(s)	652, 660, 929
NmuCI	GTSAC	6 cut(s)	134, 1086, 1334, 1373, 1840, 2170
NsbI	TGCGCA	1 cut(s)	1954
NspI	RCATGY	1 cut(s)	1953
NspV	TTCGAA	1 cut(s)	1793
OliI	CACNNNNGTG	3 cut(s)	1082, 1656, 2177
PagI	TCATGA	2 cut(s)	1005, 1725
PceI	AGGCCT	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	288, 692
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	272, 1408, 1795
PfoI	TCCNGGA	3 cut(s)	381, 1767, 1972
PinAI	ACCGGT	2 cut(s)	1071, 1120
PleI	GAGTC	9 cut(s)	167, 173, 443, 454, 517, 637, 1201, 1592, 1617
PluTI	GGCGCC	1 cut(s)	746
PmaCI	CACGTG	1 cut(s)	1241
PmlI	CACGTG	1 cut(s)	1241
PpsI	GAGTC	9 cut(s)	167, 173, 443, 454, 517, 637, 1201, 1592, 1617
Ppu21I	YACGTR	2 cut(s)	1202, 1241
PpuMI	RGGWCCY	2 cut(s)	385, 657
Psp1406I	AACGTT	1 cut(s)	1944
Psp5II	RGGWCCY	2 cut(s)	385, 657
Psp6I	CCWGG	6 cut(s)	342, 381, 393, 488, 1537, 1972
PspCI	CACGTG	1 cut(s)	1241
PspGI	CCWGG	6 cut(s)	342, 381, 393, 488, 1537, 1972
PspOMI	GGGCCC	1 cut(s)	1577
PspPPI	RGGWCCY	2 cut(s)	385, 657
PstI	CTGCAG	1 cut(s)	2065
PstNI	CAGNNNCTG	2 cut(s)	138, 388
PsuI	RGATCY	4 cut(s)	238, 480, 1402, 1512
RsaI	GTAC	9 cut(s)	83, 143, 884, 1200, 1263, 1633, 1739, 1964, 2165
RsaNI	GTAC	9 cut(s)	82, 142, 883, 1199, 1262, 1632, 1738, 1963, 2164
RseI	CAYNNNNRTG	6 cut(s)	920, 1082, 1106, 1656, 1891, 2177
SacII	CCGCGG	1 cut(s)	1272
SaqAI	TTAA	5 cut(s)	38, 1233, 1545, 2118, 2256
ScaI	AGTACT	1 cut(s)	1964
SchI	GAGTC	9 cut(s)	167, 173, 444, 455, 518, 638, 1202, 1592, 1618
SduI	GDGCHC	8 cut(s)	363, 562, 1446, 1581, 1703, 1807, 1898, 2264
SfaNI	GCATC	2 cut(s)	454, 1762
SfcI	CTRYAG	2 cut(s)	1731, 2061
SfiI	GGCCNNNNNGGCC	1 cut(s)	983
SfoI	GGCGCC	1 cut(s)	744
Sfr303I	CCGCGG	1 cut(s)	1272
SfuI	TTCGAA	1 cut(s)	1793
SgrAI	CRCCGGYG	1 cut(s)	1079
SgrBI	CCGCGG	1 cut(s)	1272
SinI	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
SmiMI	CAYNNNNRTG	6 cut(s)	920, 1082, 1106, 1656, 1891, 2177
SmlI	CTYRAG	1 cut(s)	2125
SmoI	CTYRAG	1 cut(s)	2125
Sse9I	AATT	4 cut(s)	1495, 1693, 2042, 2216
SseBI	AGGCCT	1 cut(s)	398
SspDI	GGCGCC	1 cut(s)	742
SspMI	CTAG	3 cut(s)	236, 1158, 1602
StuI	AGGCCT	1 cut(s)	398
StyI	CCWWGG	3 cut(s)	921, 1026, 2187
TaaI	ACNGT	9 cut(s)	134, 504, 1012, 1334, 1398, 1441, 2036, 2146, 2170
TaiI	ACGT	6 cut(s)	83, 411, 668, 1204, 1243, 1947
TaqI	TCGA	8 cut(s)	291, 834, 1793, 1824, 1868, 1914, 2038, 2225
TasI	AATT	4 cut(s)	1495, 1693, 2042, 2216
TatI	WGTACW	2 cut(s)	1962, 2163
TfiI	GAWTC	3 cut(s)	272, 1408, 1795
Tru1I	TTAA	5 cut(s)	38, 1233, 1545, 2118, 2256
Tru9I	TTAA	5 cut(s)	38, 1233, 1545, 2118, 2256
TscAI	CASTG	4 cut(s)	139, 509, 679, 1588
TseFI	GTSAC	6 cut(s)	134, 1086, 1334, 1373, 1840, 2170
TseI	GCWGC	3 cut(s)	1556, 1667, 1775
Tsp45I	GTSAC	6 cut(s)	134, 1086, 1334, 1373, 1840, 2170
TspDTI	ATGAA	3 cut(s)	110, 623, 1983
TspGWI	ACGGA	3 cut(s)	52, 852, 1788
TspRI	CASTG	4 cut(s)	139, 509, 679, 1588
VpaK11BI	GGWCC	9 cut(s)	385, 640, 657, 780, 798, 873, 1030, 1535, 2093
XagI	CCTNNNNNAGG	1 cut(s)	392
XapI	RAATTY	2 cut(s)	1495, 2216
XbaI	TCTAGA	1 cut(s)	235
XceI	RCATGY	1 cut(s)	1953
XmiI	GTMKAC	1 cut(s)	1857
XspI	CTAG	3 cut(s)	236, 1158, 1602
ZraI	GACGTC	1 cut(s)	409
ZrmI	AGTACT	1 cut(s)	1964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.