Prupe.7G252600_v2.0.a1

FAD-NAD(P)-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0007219
Physical Location & Seq
Reverse (-)
21310264 .. 21313136
2873 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G252600.1

Sequence Viewer

Length: 1326 bp
ATGGGTCATGGTGTACACAGTACCAGAGGAACCACTTTACCATTTTGTTGTTATTCTTGTTCAGCTCGGTCCTCCTCGTCGGTTTCTCTGACTCATGGGCAGCGTCCTCCGAGTCTTGGCCCAAGTTGTGTGAGGTACGCGGTGCTTGGTGCTGGCTTCGCCGGCCTCTCAGTTGCGTGGCACTTGTTAAAGCAGAGTCCCAAAGACTCGTGTATACGCATTGACATTTACGATGAAGTTGGAATCGGAGGAGGTGCATCGGGCGTTTCAGGAGGCCTTCTTCACCCTTATTCCCCTAAAGCCAAGCTTCTATGGCGTGCTGCCGACTGCTGGAATGAATCTTTAAACCTTTTGAGCGTTGCCGAAGCAGCAGCAGCTTCTGCTGCTCAAAATCCTAATGAAGACGACCCATTGCCAATTGTTAGAAGAAGGGGCATCTTGAGACCAGCCCTGAGCATGAAGAACTTGATGATGTTGAAAGATAATGCCCAGAATTGCCTTGCCAGTTGCAGAATAGAAACCATTGACAACGATGCTGCCCAAAATCTTCTACCCAGTATATGTGTACCTTTCAACACCTCATTTTATATGCCTGAAGCTGTTAATATTTATCCTCAACGCTATTTACAGGCACTCTTCTTAGCATGTCAAAATTTGGTGAAGGAACTATATTCTGATGGCTTTGGAGTAAAAGAATTACATTTGCACAAGAGTTCTGTCCACAAACTCCTAGACCTAGAAGGGGAATACCAGGCAGTAATAGTATGTCTAGGTGCGAAAGCAGACTTGCTTCCTGAGCTCTGTGGGAGGCTTCCTTTGAGGACATGCAGAGGTGTCGTTGCACATCTTCAGCTTCCTGATCATTTAGGAGAGGAGTATCCAAGTCTTGGCCCCTCGATATTGTCAGATGCTTGGCTTGCTGTGCAAGGTCCTCGAAATTTATATTTGGGCTCAACATGGAAATGGAAATCAAGAAACTCATCACCAAATGTATGTGCAGATGAAGCCACAGAAGCCCTTAACGAGCTTCTGCCGAAGGCATGTGCCATTTTTCCTGCTCTAAAGGATTGGAGCTTTGCTGGAGCCAGGGCTGGCCTGAGGGCAATGCCACCACTCACTCCTCATGGCTCACTTCCCCTTTTGGGTTGTGTCAATGACATTGTAGGCGAAAACCGAACCTCCAACTACTGGTTATTTGGAGGGCTTGGTTCAAGGGGATTGTTGTACCATGGTTGGCTTGGGAAGTTGATGGCAGAAGCTGTGCTTTCATGTAGAGAAGAATTAATCCCAGATGAATTAACCTCCTGGAAGAAAAGAAGACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO

Protein Analysis

442

Amino Acids

47.93

Weight (kDa)

8.08

Isoelectric Point (pI)

52.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 887, 1188
AccI GTMKAC 1 cut(s) 214
AccII CGCG 1 cut(s) 140
AciI CCGC 1 cut(s) 140
AcsI RAATTY 2 cut(s) 652, 937
AcuI CTGAAG 2 cut(s) 615, 833
AfaI GTAC 5 cut(s) 15, 22, 137, 567, 1226
AfiI CCNNNNNNNGG 6 cut(s) 116, 330, 742, 887, 1142, 1188
AgsI TTSAA 3 cut(s) 478, 574, 1212
AjnI CCWGG 3 cut(s) 750, 1085, 1304
AluBI AGCT 9 cut(s) 65, 307, 377, 599, 799, 853, 1027, 1074, 1259
AluI AGCT 9 cut(s) 65, 307, 377, 599, 799, 853, 1027, 1074, 1259
Alw21I GWGCWC 1 cut(s) 801
Alw26I GTCTC 1 cut(s) 436
AlwNI CAGNNNCTG 2 cut(s) 380, 1259
AoxI GGCC 5 cut(s) 118, 163, 274, 889, 1093
ApeKI GCWGC 7 cut(s) 100, 320, 368, 371, 374, 383, 536
ApoI RAATTY 2 cut(s) 652, 937
AseI ATTAAT 1 cut(s) 1283
AspS9I GGNCC 4 cut(s) 69, 119, 890, 929
AsuHPI GGTGA 3 cut(s) 275, 670, 975
AvaII GGWCC 2 cut(s) 69, 929
AxyI CCTNAGG 1 cut(s) 1097
BanII GRGCYC 2 cut(s) 801, 953
BauI CACGAG 1 cut(s) 208
BbsI GAAGAC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 801
BbvI GCAGC 7 cut(s) 112, 307, 370, 380, 383, 386, 523
BccI CCATC 2 cut(s) 671, 1243
BcgI CGANNNNNNTGC 4 cut(s) 817, 851, 914, 948
BciT130I CCWGG 3 cut(s) 752, 1087, 1306
BciVI GTATCC 1 cut(s) 888
BclI TGATCA 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 436
BfaI CTAG 3 cut(s) 731, 737, 770
BfuI GTATCC 1 cut(s) 888
BisI GCNGC 7 cut(s) 101, 321, 369, 372, 375, 384, 537
BlsI GCNGC 7 cut(s) 102, 322, 370, 373, 376, 385, 538
Bme1390I CCNGG 3 cut(s) 752, 1087, 1306
Bme18I GGWCC 2 cut(s) 69, 929
BmgT120I GGNCC 4 cut(s) 69, 119, 890, 929
BmiI GGNNCC 3 cut(s) 31, 892, 1084
BmrFI CCNGG 3 cut(s) 752, 1087, 1306
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 4 cut(s) 266, 444, 523, 898
BmuI ACTGGG 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 408
BpmI CTGGAG 1 cut(s) 1101
Bpu10I CCTNAGC 2 cut(s) 452, 795
BpuEI CTTGAG 1 cut(s) 460
BsaI GGTCTC 1 cut(s) 436
BsaJI CCNNGG 2 cut(s) 1086, 1228
BsaXI ACNNNNNCTCC 2 cut(s) 1163, 1193
Bsc4I CCNNNNNNNGG 6 cut(s) 116, 330, 742, 887, 1142, 1188
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 3 cut(s) 504, 555, 1193
Bse21I CCTNAGG 1 cut(s) 1097
Bse3DI GCAATG 2 cut(s) 410, 1110
BseBI CCWGG 3 cut(s) 752, 1087, 1306
BseDI CCNNGG 2 cut(s) 1086, 1228
BseLI CCNNNNNNNGG 6 cut(s) 116, 330, 742, 887, 1142, 1188
BseMI GCAATG 2 cut(s) 410, 1110
BseMII CTCAG 4 cut(s) 183, 443, 786, 1088
BseNI ACTGG 3 cut(s) 504, 555, 1193
BseRI GAGGAG 4 cut(s) 64, 264, 887, 1110
BseXI GCAGC 7 cut(s) 112, 307, 370, 380, 383, 386, 523
BsgI GTGCAG 1 cut(s) 1017
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 5 cut(s) 120, 165, 276, 891, 1095
BsiHKAI GWGCWC 1 cut(s) 801
BsiSI CCGG 1 cut(s) 162
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 6 cut(s) 116, 330, 742, 887, 1142, 1188
BsmAI GTCTC 1 cut(s) 436
BsmFI GGGAC 1 cut(s) 183
BsnI GGCC 5 cut(s) 120, 165, 276, 891, 1095
Bso31I GGTCTC 1 cut(s) 436
Bsp1286I GDGCHC 2 cut(s) 801, 953
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 1 cut(s) 859
Bsp19I CCATGG 1 cut(s) 1228
BspACI CCGC 1 cut(s) 140
BspANI GGCC 5 cut(s) 120, 165, 276, 891, 1095
BspCNI CTCAG 4 cut(s) 182, 444, 787, 1089
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 31, 892, 1084
BspTNI GGTCTC 1 cut(s) 436
BsrDI GCAATG 2 cut(s) 410, 1110
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 1 cut(s) 13
BsrI ACTGG 3 cut(s) 504, 555, 1193
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 1086, 1228
BssMI GATC 1 cut(s) 859
BssNAI GTATAC 1 cut(s) 215
BssSI CACGAG 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 1228
Bst1107I GTATAC 1 cut(s) 215
Bst2BI CACGAG 1 cut(s) 208
Bst2UI CCWGG 3 cut(s) 752, 1087, 1306
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 1 cut(s) 641
BstAPI GCANNNNNTGC 1 cut(s) 380
BstAUI TGTACA 1 cut(s) 13
BstC8I GCNNGC 5 cut(s) 154, 163, 318, 918, 1093
BstDEI CTNAG 5 cut(s) 169, 452, 640, 795, 1097
BstDSI CCRYGG 1 cut(s) 1228
BstFNI CGCG 1 cut(s) 140
BstKTI GATC 1 cut(s) 862
BstMAI GTCTC 1 cut(s) 436
BstMBI GATC 1 cut(s) 859
BstNI CCWGG 3 cut(s) 752, 1087, 1306
BstNSI RCATGY 3 cut(s) 648, 828, 1044
BstSCI CCNGG 3 cut(s) 750, 1085, 1304
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 7 cut(s) 112, 307, 370, 380, 383, 386, 523
BstV2I GAAGAC 1 cut(s) 408
BstZ17I GTATAC 1 cut(s) 215
Bsu36I CCTNAGG 1 cut(s) 1097
BsuI GTATCC 1 cut(s) 888
BsuRI GGCC 5 cut(s) 120, 165, 276, 891, 1095
BtgI CCRYGG 1 cut(s) 1228
Cac8I GCNNGC 5 cut(s) 154, 163, 318, 918, 1093
CaiI CAGNNNCTG 2 cut(s) 380, 1259
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 4 cut(s) 69, 119, 890, 929
CseI GACGC 1 cut(s) 92
Csp6I GTAC 5 cut(s) 14, 21, 136, 566, 1225
CviQI GTAC 5 cut(s) 14, 21, 136, 566, 1225
DdeI CTNAG 5 cut(s) 169, 452, 640, 795, 1097
DpnI GATC 1 cut(s) 861
DpnII GATC 1 cut(s) 859
DraI TTTAAA 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 641
EarI CTCTTC 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 799
Eco130I CCWWGG 1 cut(s) 1228
Eco147I AGGCCT 1 cut(s) 276
Eco24I GRGCYC 2 cut(s) 801, 953
Eco31I GGTCTC 1 cut(s) 436
Eco47I GGWCC 2 cut(s) 69, 929
Eco53kI GAGCTC 1 cut(s) 799
Eco57I CTGAAG 2 cut(s) 615, 833
Eco81I CCTNAGG 1 cut(s) 1097
EcoICRI GAGCTC 1 cut(s) 799
EcoO109I RGGNCCY 1 cut(s) 929
EcoRII CCWGG 3 cut(s) 750, 1085, 1304
EcoT14I CCWWGG 1 cut(s) 1228
EcoT38I GRGCYC 2 cut(s) 801, 953
ErhI CCWWGG 1 cut(s) 1228
FalI AAGNNNNNCTT 4 cut(s) 291, 323, 1248, 1280
FaqI GGGAC 1 cut(s) 183
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 1 cut(s) 214
Fnu4HI GCNGC 7 cut(s) 101, 321, 369, 372, 375, 384, 537
FriOI GRGCYC 2 cut(s) 801, 953
Fsp4HI GCNGC 7 cut(s) 101, 321, 369, 372, 375, 384, 537
FspBI CTAG 3 cut(s) 731, 737, 770
GluI GCNGC 7 cut(s) 101, 321, 369, 372, 375, 384, 537
GsuI CTGGAG 1 cut(s) 1101
HaeIII GGCC 5 cut(s) 120, 165, 276, 891, 1095
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 6 cut(s) 91, 112, 196, 206, 243, 338
HpaII CCGG 1 cut(s) 162
HphI GGTGA 3 cut(s) 275, 670, 975
Hpy166II GTNNAC 5 cut(s) 14, 16, 215, 566, 721
Hpy188I TCNGA 5 cut(s) 90, 111, 248, 676, 907
Hpy188III TCNNGA 5 cut(s) 270, 439, 794, 857, 972
Hpy8I GTNNAC 5 cut(s) 14, 16, 215, 566, 721
Hpy99I CGWCG 1 cut(s) 82
HpyAV CCTTC 5 cut(s) 287, 423, 655, 734, 1030
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4V TGCA 7 cut(s) 257, 510, 706, 828, 842, 925, 998
HpyF3I CTNAG 5 cut(s) 169, 452, 640, 795, 1097
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 1 cut(s) 859
LmnI GCTCC 2 cut(s) 1071, 1082
Lsp1109I GCAGC 7 cut(s) 112, 307, 370, 380, 383, 386, 523
LweI GCATC 4 cut(s) 266, 444, 523, 898
MaeI CTAG 3 cut(s) 731, 737, 770
MalI GATC 1 cut(s) 861
MboI GATC 1 cut(s) 859
MboII GAAGA 9 cut(s) 272, 413, 438, 472, 539, 628, 839, 1289, 1321
MfeI CAATTG 1 cut(s) 417
MhlI GDGCHC 2 cut(s) 801, 953
MluCI AATT 7 cut(s) 417, 493, 652, 695, 937, 1280, 1295
MlyI GAGTC 4 cut(s) 85, 121, 200, 205
MmeI TCCRAC 2 cut(s) 220, 1206
MroNI GCCGGC 1 cut(s) 161
MseI TTAA 6 cut(s) 188, 344, 603, 1020, 1283, 1298
MslI CAYNNNNRTG 1 cut(s) 961
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 3 cut(s) 752, 1087, 1306
MunI CAATTG 1 cut(s) 417
MvaI CCWGG 3 cut(s) 752, 1087, 1306
MvnI CGCG 1 cut(s) 140
NaeI GCCGGC 1 cut(s) 163
NcoI CCATGG 1 cut(s) 1228
NdeII GATC 1 cut(s) 859
NgoMIV GCCGGC 1 cut(s) 161
NlaIV GGNNCC 3 cut(s) 31, 892, 1084
NspI RCATGY 3 cut(s) 648, 828, 1044
PceI AGGCCT 1 cut(s) 276
PdiI GCCGGC 1 cut(s) 163
PfeI GAWTC 2 cut(s) 243, 338
PflMI CCANNNNNTGG 2 cut(s) 887, 1188
PfoI TCCNGGA 1 cut(s) 1304
PkrI GCNGC 7 cut(s) 102, 322, 370, 373, 376, 385, 538
PleI GAGTC 4 cut(s) 85, 120, 200, 204
PpsI GAGTC 4 cut(s) 85, 120, 200, 204
PpuMI RGGWCCY 1 cut(s) 929
PshBI ATTAAT 1 cut(s) 1283
Psp124BI GAGCTC 1 cut(s) 801
Psp5II RGGWCCY 1 cut(s) 929
Psp6I CCWGG 3 cut(s) 750, 1085, 1304
PspGI CCWGG 3 cut(s) 750, 1085, 1304
PspN4I GGNNCC 3 cut(s) 31, 892, 1084
PspPI GGNCC 4 cut(s) 69, 119, 890, 929
PspPPI RGGWCCY 1 cut(s) 929
PstNI CAGNNNCTG 2 cut(s) 380, 1259
RsaI GTAC 5 cut(s) 15, 22, 137, 567, 1226
RsaNI GTAC 5 cut(s) 14, 21, 136, 566, 1225
RseI CAYNNNNRTG 1 cut(s) 961
SacI GAGCTC 1 cut(s) 801
SaqAI TTAA 6 cut(s) 188, 344, 603, 1020, 1283, 1298
SatI GCNGC 7 cut(s) 101, 321, 369, 372, 375, 384, 537
Sau3AI GATC 1 cut(s) 859
Sau96I GGNCC 4 cut(s) 69, 119, 890, 929
SchI GAGTC 4 cut(s) 85, 121, 200, 205
ScrFI CCNGG 3 cut(s) 752, 1087, 1306
SduI GDGCHC 2 cut(s) 801, 953
SfaNI GCATC 4 cut(s) 266, 444, 523, 898
SinI GGWCC 2 cut(s) 69, 929
SmiMI CAYNNNNRTG 1 cut(s) 961
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
Sse9I AATT 7 cut(s) 417, 493, 652, 695, 937, 1280, 1295
SseBI AGGCCT 1 cut(s) 276
SsiI CCGC 1 cut(s) 140
SspI AATATT 1 cut(s) 607
SspMI CTAG 3 cut(s) 731, 737, 770
SstI GAGCTC 1 cut(s) 801
StuI AGGCCT 1 cut(s) 276
StyD4I CCNGG 3 cut(s) 750, 1085, 1304
StyI CCWWGG 1 cut(s) 1228
TaaI ACNGT 1 cut(s) 20
TaqI TCGA 2 cut(s) 896, 934
TaqII GACCGA 1 cut(s) 57
TasI AATT 7 cut(s) 417, 493, 652, 695, 937, 1280, 1295
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 2 cut(s) 243, 338
Tru1I TTAA 6 cut(s) 188, 344, 603, 1020, 1283, 1298
Tru9I TTAA 6 cut(s) 188, 344, 603, 1020, 1283, 1298
TseI GCWGC 7 cut(s) 100, 320, 368, 371, 374, 383, 536
TspDTI ATGAA 7 cut(s) 249, 351, 414, 473, 1017, 1257, 1308
Van91I CCANNNNNTGG 2 cut(s) 887, 1188
VpaK11BI GGWCC 2 cut(s) 69, 929
VspI ATTAAT 1 cut(s) 1283
XapI RAATTY 2 cut(s) 652, 937
XceI RCATGY 3 cut(s) 648, 828, 1044
XcmI CCANNNNNNNNNTGG 1 cut(s) 1235
XmiI GTMKAC 1 cut(s) 214
XspI CTAG 3 cut(s) 731, 737, 770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.