Rh2BG017100

FAD-NAD(P)-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007219
Physical Location & Seq
Reverse (-)
1217776 .. 1218156
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG017100.1

Sequence Viewer

Length: 381 bp
ATGGGCTCAACATGGGAATGGAAATCAAGAAATTCATCATCAAATGTATCTGCAGATGAAGCTACAGAAGCCCTTAAAGAGCTTCTACCAAAGGCATGCGGCATCTATCCGGTTGTAAAAGATTGGACCTTTATTGGAGCGAGGGCTGGCCTTAGGGCAATGCCACCACTCACTCCTCATGGGTCACTTCCTCTTTTGGGTTATGTCAATAACATTATAGGTCAAAATCAAACTTGCAAATACTGGTTATTTGGAGGGCTCAGTTCAAGGGGATTGTTGTATCATGGTTGGCTTGGGAAGTTGATGGCACAAGCTGTGCTTTCGTGTAACGAAGAATTAATTCCATATGAATTAACCTCTTGGAAAAGAACAAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO

Protein Analysis

126

Amino Acids

14.02

Weight (kDa)

9.07

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 18 - 104 1.3e-06 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 99
AcsI RAATTY 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 267
AluBI AGCT 3 cut(s) 62, 82, 314
AluI AGCT 3 cut(s) 62, 82, 314
AoxI GGCC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 31
AseI ATTAAT 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 126
AvaII GGWCC 1 cut(s) 126
AxyI CCTNAGG 1 cut(s) 152
BanII GRGCYC 2 cut(s) 8, 261
BccI CCATC 1 cut(s) 298
BfmI CTRYAG 2 cut(s) 51, 63
BisI GCNGC 1 cut(s) 100
BlsI GCNGC 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmsI GCATC 1 cut(s) 111
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 248
Bse21I CCTNAGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 165
BseMII CTCAG 1 cut(s) 274
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 2 cut(s) 8, 261
BspACI CCGC 1 cut(s) 99
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 273
BspMAI CTGCAG 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 248
BstC8I GCNNGC 2 cut(s) 97, 148
BstDEI CTNAG 2 cut(s) 152, 260
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 2 cut(s) 51, 63
Bsu36I CCTNAGG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 150
Cac8I GCNNGC 2 cut(s) 97, 148
Cfr13I GGNCC 1 cut(s) 126
CviAII CATG 4 cut(s) 12, 96, 179, 284
CviJI RGCY 9 cut(s) 6, 62, 71, 82, 146, 150, 259, 292, 314
CviKI_1 RGCY 9 cut(s) 6, 62, 71, 82, 146, 150, 259, 292, 314
DdeI CTNAG 2 cut(s) 152, 260
Eco24I GRGCYC 2 cut(s) 8, 261
Eco47I GGWCC 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 152
EcoT38I GRGCYC 2 cut(s) 8, 261
FaeI CATG 4 cut(s) 15, 99, 182, 287
FaiI YATR 8 cut(s) 13, 97, 180, 204, 218, 285, 346, 348
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FatI CATG 4 cut(s) 11, 95, 178, 283
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 100
FriOI GRGCYC 2 cut(s) 8, 261
Fsp4HI GCNGC 1 cut(s) 100
GluI GCNGC 1 cut(s) 100
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 110
Hin1II CATG 4 cut(s) 15, 99, 182, 287
HpaII CCGG 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 53, 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
HpyF3I CTNAG 2 cut(s) 152, 260
Hsp92II CATG 4 cut(s) 15, 99, 182, 287
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 3 cut(s) 123, 132, 229
LweI GCATC 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 183, 326
MboII GAAGA 1 cut(s) 344
MhlI GDGCHC 2 cut(s) 8, 261
MluCI AATT 4 cut(s) 31, 335, 339, 350
MnlI CCTC 5 cut(s) 135, 186, 201, 248, 367
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 3 cut(s) 75, 338, 353
MslI CAYNNNNRTG 1 cut(s) 16
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NdeI CATATG 1 cut(s) 346
NlaIII CATG 4 cut(s) 15, 99, 182, 287
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 1 cut(s) 99
PaeI GCATGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 339
PkrI GCNGC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 338
PspPI GGNCC 1 cut(s) 126
PstI CTGCAG 1 cut(s) 55
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 3 cut(s) 75, 338, 353
SatI GCNGC 1 cut(s) 100
Sau96I GGNCC 1 cut(s) 126
SduI GDGCHC 2 cut(s) 8, 261
SetI ASST 6 cut(s) 64, 84, 131, 223, 316, 359
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 2 cut(s) 51, 63
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 16
SphI GCATGC 1 cut(s) 99
Sse9I AATT 4 cut(s) 31, 335, 339, 350
SsiI CCGC 1 cut(s) 99
TasI AATT 4 cut(s) 31, 335, 339, 350
TauI GCSGC 1 cut(s) 102
Tru1I TTAA 3 cut(s) 75, 338, 353
Tru9I TTAA 3 cut(s) 75, 338, 353
TseFI GTSAC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 3 cut(s) 24, 72, 363
VpaK11BI GGWCC 1 cut(s) 126
VspI ATTAAT 1 cut(s) 338
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.