Rw2G001470

FAD-NAD(P)-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007219
Physical Location & Seq
Reverse (-)
1236203 .. 1238871
2669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G001470.1

Sequence Viewer

Length: 678 bp
ATGAAGTCGGAATCGGCGGCGGCGCTTCCGGCGTCTCCGGCGGCCTTCTTCACCCTTACTCTCCCAAAGCCAGGCTCCTATGGCGCGCCGCCGAGGGAATACCAGGCAGTAATTGTATGTCTAGGAGCCAAAGCAGATCTGCTTCCTGAGCTCTCTGGGAGGCTTCCATTGAGGACATGCAGAGGTGTCGTTGCACATCTGCAGCTTCCTGATAACATGGGAGGGGAGTATCCAGGCTTTGGCCCCTCAATATTGTCAGATGCTTGGCTTGCTGTCCAAGGACCTCGTAGTTTGTATATGGGCTCAACATGGGAATGGAAATCAAGAAATTCATCATCAAATGTATCTGCAGATGAAGCTACAGAAGCCCTTAAAGAGCTTCTACCAAAGGCATGCAGCATTTATCCAGTTGTAAAAGATTGGACCTTTATTGGAGCGAGGGCTGGCCTTAGGGCAATGCCACCACTCACTCCTCATGGGTCACTTCCTCTTTTGGGTTGTGTCAATAACATTATAGGTCAAAATCAAACTTGCAAATACTGGTTATTTGGAGGGCTTGGTTCAAGGGGATTGTTGTACCATGGTTGGCTTGGGAAGTTGATGGCACAAGCTGTGCTTTCGTGTAACGAAGAATTAATTCCATATGAATTAACCTCTTGGAAAAGAACAAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO

Protein Analysis

225

Amino Acids

24.33

Weight (kDa)

8.89

Isoelectric Point (pI)

46.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 32 - 203 1.1e-15 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 239
AccII CGCG 1 cut(s) 86
AciI CCGC 4 cut(s) 17, 20, 41, 89
AcsI RAATTY 1 cut(s) 328
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 1 cut(s) 578
AfiI CCNNNNNNNGG 3 cut(s) 71, 239, 494
AgsI TTSAA 1 cut(s) 564
AjnI CCWGG 3 cut(s) 70, 102, 232
AluBI AGCT 5 cut(s) 151, 205, 359, 379, 611
AluI AGCT 5 cut(s) 151, 205, 359, 379, 611
Alw21I GWGCWC 1 cut(s) 153
Alw26I GTCTC 1 cut(s) 39
AoxI GGCC 3 cut(s) 42, 241, 445
ApeKI GCWGC 2 cut(s) 202, 396
ApoI RAATTY 1 cut(s) 328
AscI GGCGCGCC 1 cut(s) 84
AseI ATTAAT 1 cut(s) 635
Asp700I GAANNNNTTC 1 cut(s) 636
AspLEI GCGC 3 cut(s) 25, 86, 88
AspS9I GGNCC 3 cut(s) 242, 281, 423
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 2 cut(s) 281, 423
AxyI CCTNAGG 1 cut(s) 449
BanII GRGCYC 2 cut(s) 153, 305
Bbv12I GWGCWC 1 cut(s) 153
BbvI GCAGC 2 cut(s) 214, 408
BccI CCATC 1 cut(s) 595
BcgI CGANNNNNNTGC 2 cut(s) 169, 203
BciT130I CCWGG 3 cut(s) 72, 104, 234
BciVI GTATCC 1 cut(s) 240
BcoDI GTCTC 1 cut(s) 39
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 3 cut(s) 200, 348, 360
BfoI RGCGCY 1 cut(s) 26
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 1 cut(s) 136
BisI GCNGC 6 cut(s) 18, 21, 42, 89, 203, 397
BlsI GCNGC 6 cut(s) 19, 22, 43, 90, 204, 398
Bme1390I CCNGG 3 cut(s) 72, 104, 234
Bme18I GGWCC 2 cut(s) 281, 423
BmgT120I GGNCC 3 cut(s) 242, 281, 423
BmiI GGNNCC 3 cut(s) 76, 127, 244
BmrFI CCNGG 3 cut(s) 72, 104, 234
BmsI GCATC 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 32
BsaJI CCNNGG 3 cut(s) 92, 277, 580
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 239, 494
Bse1I ACTGG 2 cut(s) 407, 545
Bse21I CCTNAGG 1 cut(s) 449
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 3 cut(s) 72, 104, 234
BseDI CCNNGG 3 cut(s) 92, 277, 580
BseLI CCNNNNNNNGG 3 cut(s) 71, 239, 494
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 138
BseNI ACTGG 2 cut(s) 407, 545
BsePI GCGCGC 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 462
BseXI GCAGC 2 cut(s) 214, 408
Bsh1236I CGCG 1 cut(s) 86
BshFI GGCC 3 cut(s) 44, 243, 447
BsiHKAI GWGCWC 1 cut(s) 153
BsiSI CCGG 2 cut(s) 29, 38
BslI CCNNNNNNNGG 3 cut(s) 71, 239, 494
BsmAI GTCTC 1 cut(s) 39
BsmBI CGTCTC 1 cut(s) 39
BsnI GGCC 3 cut(s) 44, 243, 447
Bsp1286I GDGCHC 2 cut(s) 153, 305
Bsp143I GATC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 580
BspACI CCGC 4 cut(s) 17, 20, 41, 89
BspANI GGCC 3 cut(s) 44, 243, 447
BspCNI CTCAG 1 cut(s) 139
BspFNI CGCG 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 76, 127, 244
BspMAI CTGCAG 2 cut(s) 204, 352
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 2 cut(s) 407, 545
BssECI CCNNGG 3 cut(s) 92, 277, 580
BssHII GCGCGC 1 cut(s) 84
BssMI GATC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 2 cut(s) 277, 580
Bst2UI CCWGG 3 cut(s) 72, 104, 234
BstACI GRCGYC 1 cut(s) 32
BstC8I GCNNGC 4 cut(s) 86, 270, 394, 445
BstDEI CTNAG 2 cut(s) 147, 449
BstDSI CCRYGG 1 cut(s) 580
BstFNI CGCG 1 cut(s) 86
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 3 cut(s) 25, 86, 88
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 39
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 7 cut(s) 29, 38, 81, 148, 269, 356, 365
BstNI CCWGG 3 cut(s) 72, 104, 234
BstNSI RCATGY 2 cut(s) 180, 396
BstSCI CCNGG 3 cut(s) 70, 102, 232
BstSFI CTRYAG 3 cut(s) 200, 348, 360
BstUI CGCG 1 cut(s) 86
BstV1I GCAGC 2 cut(s) 214, 408
BstX2I RGATCY 1 cut(s) 136
BstYI RGATCY 1 cut(s) 136
Bsu36I CCTNAGG 1 cut(s) 449
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 3 cut(s) 44, 243, 447
BtgI CCRYGG 1 cut(s) 580
Cac8I GCNNGC 4 cut(s) 86, 270, 394, 445
CfoI GCGC 3 cut(s) 25, 86, 88
Cfr13I GGNCC 3 cut(s) 242, 281, 423
CseI GACGC 1 cut(s) 21
Csp6I GTAC 1 cut(s) 577
CviAII CATG 6 cut(s) 177, 217, 309, 393, 476, 581
CviQI GTAC 1 cut(s) 577
DdeI CTNAG 2 cut(s) 147, 449
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
Ecl136II GAGCTC 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 277, 580
Eco24I GRGCYC 2 cut(s) 153, 305
Eco47I GGWCC 2 cut(s) 281, 423
Eco53kI GAGCTC 1 cut(s) 151
Eco81I CCTNAGG 1 cut(s) 449
EcoICRI GAGCTC 1 cut(s) 151
EcoO109I RGGNCCY 1 cut(s) 281
EcoRII CCWGG 3 cut(s) 70, 102, 232
EcoT14I CCWWGG 2 cut(s) 277, 580
EcoT38I GRGCYC 2 cut(s) 153, 305
ErhI CCWWGG 2 cut(s) 277, 580
Esp3I CGTCTC 1 cut(s) 39
FaeI CATG 6 cut(s) 180, 220, 312, 396, 479, 584
FalI AAGNNNNNCTT 2 cut(s) 600, 632
FatI CATG 6 cut(s) 176, 216, 308, 392, 475, 580
FauNDI CATATG 1 cut(s) 643
Fnu4HI GCNGC 6 cut(s) 18, 21, 42, 89, 203, 397
FriOI GRGCYC 2 cut(s) 153, 305
Fsp4HI GCNGC 6 cut(s) 18, 21, 42, 89, 203, 397
FspBI CTAG 1 cut(s) 122
GlaI GCGC 3 cut(s) 24, 85, 87
GluI GCNGC 6 cut(s) 18, 21, 42, 89, 203, 397
HaeII RGCGCY 1 cut(s) 26
HaeIII GGCC 3 cut(s) 44, 243, 447
HapII CCGG 2 cut(s) 29, 38
HgaI GACGC 1 cut(s) 21
HhaI GCGC 3 cut(s) 25, 86, 88
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 6 cut(s) 180, 220, 312, 396, 479, 584
Hin6I GCGC 3 cut(s) 23, 84, 86
HinP1I GCGC 3 cut(s) 23, 84, 86
HinfI GANTC 1 cut(s) 11
HpaII CCGG 2 cut(s) 29, 38
HphI GGTGA 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 10, 259
Hpy188III TCNNGA 3 cut(s) 146, 209, 324
HpyAV CCTTC 1 cut(s) 55
HpyCH4V TGCA 6 cut(s) 180, 194, 202, 350, 396, 534
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 38, 81, 148, 269, 356, 365
HpyF3I CTNAG 2 cut(s) 147, 449
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 6 cut(s) 180, 220, 312, 396, 479, 584
HspAI GCGC 3 cut(s) 23, 84, 86
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 3 cut(s) 80, 125, 434
Lsp1109I GCAGC 2 cut(s) 214, 408
LweI GCATC 1 cut(s) 250
MaeI CTAG 1 cut(s) 122
MaeIII GTNAC 2 cut(s) 480, 623
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 2 cut(s) 40, 641
MflI RGATCY 1 cut(s) 136
MhlI GDGCHC 2 cut(s) 153, 305
MluCI AATT 5 cut(s) 111, 328, 632, 636, 647
MroXI GAANNNNTTC 1 cut(s) 636
MseI TTAA 3 cut(s) 372, 635, 650
MslI CAYNNNNRTG 1 cut(s) 313
MspI CCGG 2 cut(s) 29, 38
MspR9I CCNGG 3 cut(s) 72, 104, 234
MvaI CCWGG 3 cut(s) 72, 104, 234
MvnI CGCG 1 cut(s) 86
MwoI GCNNNNNNNGC 7 cut(s) 29, 38, 81, 148, 269, 356, 365
NcoI CCATGG 1 cut(s) 580
NdeI CATATG 1 cut(s) 643
NdeII GATC 1 cut(s) 136
NlaIII CATG 6 cut(s) 180, 220, 312, 396, 479, 584
NlaIV GGNNCC 3 cut(s) 76, 127, 244
NmeAIII GCCGAG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 480
NspI RCATGY 2 cut(s) 180, 396
PaeI GCATGC 1 cut(s) 396
PalAI GGCGCGCC 1 cut(s) 84
PauI GCGCGC 1 cut(s) 84
PdmI GAANNNNTTC 1 cut(s) 636
PfeI GAWTC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 6 cut(s) 19, 22, 43, 90, 204, 398
PpuMI RGGWCCY 1 cut(s) 281
PshBI ATTAAT 1 cut(s) 635
Psp124BI GAGCTC 1 cut(s) 153
Psp5II RGGWCCY 1 cut(s) 281
Psp6I CCWGG 3 cut(s) 70, 102, 232
PspGI CCWGG 3 cut(s) 70, 102, 232
PspN4I GGNNCC 3 cut(s) 76, 127, 244
PspPI GGNCC 3 cut(s) 242, 281, 423
PspPPI RGGWCCY 1 cut(s) 281
PstI CTGCAG 2 cut(s) 204, 352
PsuI RGATCY 1 cut(s) 136
PteI GCGCGC 1 cut(s) 84
RsaI GTAC 1 cut(s) 578
RsaNI GTAC 1 cut(s) 577
RseI CAYNNNNRTG 1 cut(s) 313
SacI GAGCTC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 372, 635, 650
SatI GCNGC 6 cut(s) 18, 21, 42, 89, 203, 397
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 3 cut(s) 242, 281, 423
ScrFI CCNGG 3 cut(s) 72, 104, 234
SduI GDGCHC 2 cut(s) 153, 305
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 3 cut(s) 200, 348, 360
SgsI GGCGCGCC 1 cut(s) 84
SinI GGWCC 2 cut(s) 281, 423
SmiMI CAYNNNNRTG 1 cut(s) 313
SphI GCATGC 1 cut(s) 396
Sse9I AATT 5 cut(s) 111, 328, 632, 636, 647
SsiI CCGC 4 cut(s) 17, 20, 41, 89
SspI AATATT 1 cut(s) 252
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 153
StyD4I CCNGG 3 cut(s) 70, 102, 232
StyI CCWWGG 2 cut(s) 277, 580
TasI AATT 5 cut(s) 111, 328, 632, 636, 647
TauI GCSGC 4 cut(s) 20, 23, 44, 91
TfiI GAWTC 1 cut(s) 11
Tru1I TTAA 3 cut(s) 372, 635, 650
Tru9I TTAA 3 cut(s) 372, 635, 650
TseFI GTSAC 1 cut(s) 480
TseI GCWGC 2 cut(s) 202, 396
Tsp45I GTSAC 1 cut(s) 480
TspDTI ATGAA 4 cut(s) 17, 321, 369, 660
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 2 cut(s) 281, 423
VspI ATTAAT 1 cut(s) 635
XapI RAATTY 1 cut(s) 328
XceI RCATGY 2 cut(s) 180, 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 587
XmnI GAANNNNTTC 1 cut(s) 636
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.