Rh2AG017600

FAD-NAD(P)-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007219
Physical Location & Seq
Reverse (-)
1349723 .. 1350103
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG017600.1

Sequence Viewer

Length: 381 bp
ATGGGCTCGACATGGGAATGGAAATCAAGAAATTCATCATCAAATGTATCTGCAGATGAAGCTGCAGAAGCCCTTAAAGAGCTTCTACCAAAGGCATGCAGCATCTATCCGGTTGTCAAAGATTGGACCTTTATTGGAGCGAGGGCTGGCCTTAGGGCAATGCCACCACTCACTCCTCATGGGTCACTTCCTCTTTTGGGTTGTGTCAATAACATTATAGGTCAAAATCAAACTTGCAAATACTGGTTATTTGGAGGGCTTGGTTCAAGGGGATTGTTGTACCATGGTTGGCTTGGGAAGTTGATGGCACAAGCTGTGCTTTCGTGTAACGAAGAATTAATTCCATATGAATTAACCTCTTGGAAAAGAACAAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO

Protein Analysis

126

Amino Acids

13.92

Weight (kDa)

8.98

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 18 - 104 3.9e-07 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 1 cut(s) 281
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 267
AluBI AGCT 3 cut(s) 62, 82, 314
AluI AGCT 3 cut(s) 62, 82, 314
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 62, 99
ApoI RAATTY 1 cut(s) 31
AseI ATTAAT 1 cut(s) 338
Asp700I GAANNNNTTC 1 cut(s) 339
AspS9I GGNCC 1 cut(s) 126
AvaII GGWCC 1 cut(s) 126
AxyI CCTNAGG 1 cut(s) 152
BanII GRGCYC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 49, 111
BccI CCATC 1 cut(s) 298
BfmI CTRYAG 2 cut(s) 51, 63
BisI GCNGC 2 cut(s) 63, 100
BlsI GCNGC 2 cut(s) 64, 101
Bme18I GGWCC 1 cut(s) 126
BmgT120I GGNCC 1 cut(s) 126
BmsI GCATC 1 cut(s) 111
BsaJI CCNNGG 1 cut(s) 283
BsaWI WCCGGW 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 248
Bse21I CCTNAGG 1 cut(s) 152
Bse3DI GCAATG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMI GCAATG 1 cut(s) 165
BseNI ACTGG 1 cut(s) 248
BseRI GAGGAG 1 cut(s) 165
BseXI GCAGC 2 cut(s) 49, 111
BshFI GGCC 1 cut(s) 150
BsiSI CCGG 1 cut(s) 110
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 283
BspANI GGCC 1 cut(s) 150
BspMAI CTGCAG 2 cut(s) 55, 67
BsrDI GCAATG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 283
BssT1I CCWWGG 1 cut(s) 283
BstC8I GCNNGC 2 cut(s) 97, 148
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 59, 68
BstNSI RCATGY 1 cut(s) 99
BstSFI CTRYAG 2 cut(s) 51, 63
BstV1I GCAGC 2 cut(s) 49, 111
Bsu36I CCTNAGG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 97, 148
Cfr13I GGNCC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 280
CviAII CATG 4 cut(s) 12, 96, 179, 284
CviJI RGCY 9 cut(s) 6, 62, 71, 82, 146, 150, 259, 292, 314
CviKI_1 RGCY 9 cut(s) 6, 62, 71, 82, 146, 150, 259, 292, 314
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 152
EcoT14I CCWWGG 1 cut(s) 283
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 283
FaeI CATG 4 cut(s) 15, 99, 182, 287
FaiI YATR 7 cut(s) 13, 97, 180, 218, 285, 346, 348
FalI AAGNNNNNCTT 2 cut(s) 303, 335
FatI CATG 4 cut(s) 11, 95, 178, 283
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 2 cut(s) 63, 100
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 2 cut(s) 63, 100
GluI GCNGC 2 cut(s) 63, 100
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 110
Hin1II CATG 4 cut(s) 15, 99, 182, 287
HpaII CCGG 1 cut(s) 110
Hpy188III TCNNGA 1 cut(s) 27
HpyCH4V TGCA 4 cut(s) 53, 65, 99, 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 68
HpyF3I CTNAG 1 cut(s) 152
Hsp92II CATG 4 cut(s) 15, 99, 182, 287
LmnI GCTCC 1 cut(s) 137
LpnPI CCDG 3 cut(s) 123, 132, 229
Lsp1109I GCAGC 2 cut(s) 49, 111
LweI GCATC 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 183, 326
MboII GAAGA 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 31, 335, 339, 350
MnlI CCTC 5 cut(s) 135, 186, 201, 248, 367
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 3 cut(s) 75, 338, 353
MslI CAYNNNNRTG 1 cut(s) 16
MspI CCGG 1 cut(s) 110
MwoI GCNNNNNNNGC 2 cut(s) 59, 68
NcoI CCATGG 1 cut(s) 283
NdeI CATATG 1 cut(s) 346
NlaIII CATG 4 cut(s) 15, 99, 182, 287
NmuCI GTSAC 1 cut(s) 183
NspI RCATGY 1 cut(s) 99
PaeI GCATGC 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 339
PkrI GCNGC 2 cut(s) 64, 101
PshBI ATTAAT 1 cut(s) 338
PspPI GGNCC 1 cut(s) 126
PstI CTGCAG 2 cut(s) 55, 67
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 16
SaqAI TTAA 3 cut(s) 75, 338, 353
SatI GCNGC 2 cut(s) 63, 100
Sau96I GGNCC 1 cut(s) 126
SduI GDGCHC 1 cut(s) 8
SetI ASST 6 cut(s) 64, 84, 131, 223, 316, 359
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 2 cut(s) 51, 63
SinI GGWCC 1 cut(s) 126
SmiMI CAYNNNNRTG 1 cut(s) 16
SphI GCATGC 1 cut(s) 99
Sse9I AATT 4 cut(s) 31, 335, 339, 350
StyI CCWWGG 1 cut(s) 283
TaqI TCGA 1 cut(s) 8
TasI AATT 4 cut(s) 31, 335, 339, 350
Tru1I TTAA 3 cut(s) 75, 338, 353
Tru9I TTAA 3 cut(s) 75, 338, 353
TseFI GTSAC 1 cut(s) 183
TseI GCWGC 2 cut(s) 62, 99
Tsp45I GTSAC 1 cut(s) 183
TspDTI ATGAA 3 cut(s) 24, 72, 363
VpaK11BI GGWCC 1 cut(s) 126
VspI ATTAAT 1 cut(s) 338
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XmnI GAANNNNTTC 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.