Rroxscaffold_2G00154630

FAD-NAD(P)-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0007219
Physical Location & Seq
Forward (+)
91187827 .. 91190929
3103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00154630.1

Sequence Viewer

Length: 1266 bp
ATGCGGACACCAGTAGGCTCAGCTTTAACTCCATCTCCCTCCTCTTCTTCTCCTTATCTCTTCTCTCATTCTCAGAGTCCTTCTCGTCTTCGGTACGCTGTCCTCGGCGCTGGCTTCGCCGGCCTCTCCGTCGCTTACCACTTGCTGAAGCAGAGTCCCAAGGACTCGAATCTCCGCATCGACGTCTTCGATGAAGTCGGAATCGGCGGCGGCGCTTCCGGCGTCTCCGGCGGCCTTCTTCACCCTTACTCTCCCAAAGCCAAGCTCCTATGGCACGCCGCCGAGTGCTGGGATGAGGCCTTGAGGCTGTTGAACGTCGCCGAAGCAGCTGTGCCTCCAAACTCCGATGATGCTCCCATTGTTAGAAGAAGAGGCATCTTGAGACCAGCTTTGAGCATGAAGAACATGATGGTGCTGAAAGATAATGCCCAGAATGGCCTTGCCAGTTGCAGAATAGAAACCATTGACGAGGATGGTGCCCAAAATCTTGTACCCGGCATCTGTTCACCGTTCAATACGTCTTTTTATATGCCTGAGGCTGTTAATGTCCATCCTCAACGCTATCTCGATGCACTCTTCTTAGCGTGTCAAACTTTGGTGAAAGAACTTTGTGCTTCTGGATTGGGGATAAAAGAATTGCATTTGCACAAGGACTCCATTCACAAACTGCTAGACTTGGAAGGGGAATACCAGGCGGTAATTGTATGTCTAGGAGCCAAAGCAGATCTGCTTCCTGAGCTCTCTGGGAGGCTTCCATTGAGGACATGCAGAGGTGTCGTTGCACATCTGCAGCTTCCTGATAACATGGGAGGGCAGTATCCAGGCTTTGGCCCCTCAATATTGTCAGATGCTTGGCTTGCTGTCCAAGGACCTCGTAGTTTGTATATGGGCTCAACATGGGAATGGAAATCAAGAAATTCATCATCAAATGTATCTGCGGATGAAGCTACAGAAGCCCTTAAAGAGCTTCTACCAAAGGCATGCAGCATTTATCCAGTTGTAAAAGATTGGACCTTTATTGGAGCCAAGGCTGGCCTTAGGGCAATGCCACCACTCACTCCTCATGGGTCACTTCCTCTTTTGGGTTGTGTCAATAACATTATAGGTCAAAATCAAACTTGCAAATACTGGTTATTTGGAGGGCTTGGTTCAAGGGGATTGTTGTACCATGGCTGGCTTGGGAAGTTGATGGCACAAGCTGTGCTTTCGTGTAATGAAGAATTAATTCCATATGAATTAACCTCTTGGAAAAGAACAAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO

Protein Analysis

421

Amino Acids

45.63

Weight (kDa)

8.22

Isoelectric Point (pI)

55.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 32 - 399 6.3e-39 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
AccB1I GGYRCC 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 827
AciI CCGC 8 cut(s) 4, 175, 207, 210, 231, 279, 695, 938
AcsI RAATTY 1 cut(s) 916
AcuI CTGAAG 1 cut(s) 167
AcyI GRCGYC 2 cut(s) 183, 222
AfaI GTAC 3 cut(s) 95, 492, 1166
AfiI CCNNNNNNNGG 3 cut(s) 288, 827, 1082
AgsI TTSAA 3 cut(s) 313, 514, 1152
AjnI CCWGG 2 cut(s) 690, 820
AluBI AGCT 9 cut(s) 23, 265, 329, 389, 739, 793, 947, 967, 1199
AluI AGCT 9 cut(s) 23, 265, 329, 389, 739, 793, 947, 967, 1199
Alw21I GWGCWC 1 cut(s) 741
Alw26I GTCTC 2 cut(s) 229, 376
AoxI GGCC 6 cut(s) 121, 232, 297, 436, 829, 1033
ApeKI GCWGC 3 cut(s) 326, 790, 984
ApoI RAATTY 1 cut(s) 916
AseI ATTAAT 1 cut(s) 1223
Asp700I GAANNNNTTC 1 cut(s) 1224
AspLEI GCGC 2 cut(s) 110, 215
AspS9I GGNCC 3 cut(s) 830, 869, 1011
AsuC2I CCSGG 1 cut(s) 495
AsuHPI GGTGA 3 cut(s) 233, 498, 610
AvaII GGWCC 2 cut(s) 869, 1011
AxyI CCTNAGG 2 cut(s) 534, 1037
BaeGI GKGCMC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 476
BanII GRGCYC 2 cut(s) 741, 893
BbsI GAAGAC 2 cut(s) 80, 178
Bbv12I GWGCWC 1 cut(s) 741
BbvI GCAGC 3 cut(s) 338, 802, 996
BccI CCATC 5 cut(s) 40, 403, 467, 558, 1183
BcgI CGANNNNNNTGC 4 cut(s) 458, 492, 757, 791
BciT130I CCWGG 2 cut(s) 692, 822
BciVI GTATCC 1 cut(s) 828
BcnI CCSGG 1 cut(s) 495
BcoDI GTCTC 2 cut(s) 229, 376
BfaI CTAG 2 cut(s) 671, 710
BfmI CTRYAG 2 cut(s) 788, 948
BfoI RGCGCY 2 cut(s) 111, 216
BfuI GTATCC 1 cut(s) 828
BglII AGATCT 1 cut(s) 724
BisI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 791, 985
BlpI GCTNAGC 1 cut(s) 19
BlsI GCNGC 7 cut(s) 209, 212, 233, 280, 328, 792, 986
Bme1390I CCNGG 3 cut(s) 495, 692, 822
Bme18I GGWCC 2 cut(s) 869, 1011
BmgT120I GGNCC 3 cut(s) 830, 869, 1011
BmiI GGNNCC 4 cut(s) 478, 715, 832, 1024
BmrFI CCNGG 3 cut(s) 495, 692, 822
BmsI GCATC 6 cut(s) 186, 340, 384, 507, 559, 838
BpiI GAAGAC 2 cut(s) 80, 178
BplI GAGNNNNNCTC 2 cut(s) 67, 99
Bpu10I CCTNAGC 1 cut(s) 735
Bpu1102I GCTNAGC 1 cut(s) 19
BpuEI CTTGAG 2 cut(s) 322, 400
BpuMI CCSGG 1 cut(s) 495
BsaHI GRCGYC 2 cut(s) 183, 222
BsaI GGTCTC 1 cut(s) 376
BsaJI CCNNGG 5 cut(s) 103, 159, 865, 1026, 1168
BsaXI ACNNNNNCTCC 4 cut(s) 19, 49, 638, 668
Bsc4I CCNNNNNNNGG 3 cut(s) 288, 827, 1082
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 4 cut(s) 11, 444, 995, 1133
Bse21I CCTNAGG 2 cut(s) 534, 1037
Bse3DI GCAATG 1 cut(s) 1050
BseBI CCWGG 2 cut(s) 692, 822
BseDI CCNNGG 5 cut(s) 103, 159, 865, 1026, 1168
BseGI GGATG 4 cut(s) 298, 478, 550, 946
BseLI CCNNNNNNNGG 3 cut(s) 288, 827, 1082
BseMI GCAATG 1 cut(s) 1050
BseMII CTCAG 4 cut(s) 33, 86, 525, 726
BseNI ACTGG 4 cut(s) 11, 444, 995, 1133
BseRI GAGGAG 2 cut(s) 31, 1050
BseSI GKGCMC 1 cut(s) 481
BseXI GCAGC 3 cut(s) 338, 802, 996
BseYI CCCAGC 1 cut(s) 288
BshFI GGCC 6 cut(s) 123, 234, 299, 438, 831, 1035
BshNI GGYRCC 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 741
BsiSI CCGG 4 cut(s) 120, 219, 228, 495
BslFI GGGAC 1 cut(s) 141
BslI CCNNNNNNNGG 3 cut(s) 288, 827, 1082
BsmAI GTCTC 2 cut(s) 229, 376
BsmBI CGTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 141
BsnI GGCC 6 cut(s) 123, 234, 299, 438, 831, 1035
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 3 cut(s) 481, 741, 893
Bsp143I GATC 1 cut(s) 724
Bsp1720I GCTNAGC 1 cut(s) 19
Bsp19I CCATGG 1 cut(s) 1168
BspACI CCGC 8 cut(s) 4, 175, 207, 210, 231, 279, 695, 938
BspANI GGCC 6 cut(s) 123, 234, 299, 438, 831, 1035
BspCNI CTCAG 4 cut(s) 32, 85, 526, 727
BspLI GGNNCC 4 cut(s) 478, 715, 832, 1024
BspMAI CTGCAG 1 cut(s) 792
BspT107I GGYRCC 1 cut(s) 476
BspTNI GGTCTC 1 cut(s) 376
BsrDI GCAATG 1 cut(s) 1050
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 4 cut(s) 11, 444, 995, 1133
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 5 cut(s) 103, 159, 865, 1026, 1168
BssMI GATC 1 cut(s) 724
BssNI GRCGYC 2 cut(s) 183, 222
BssT1I CCWWGG 4 cut(s) 159, 865, 1026, 1168
Bst2UI CCWGG 2 cut(s) 692, 822
Bst4CI ACNGT 1 cut(s) 510
Bst6I CTCTTC 4 cut(s) 49, 65, 364, 581
BstACI GRCGYC 2 cut(s) 183, 222
BstC8I GCNNGC 7 cut(s) 112, 121, 276, 858, 982, 1033, 1175
BstDEI CTNAG 6 cut(s) 19, 72, 534, 580, 735, 1037
BstDSI CCRYGG 1 cut(s) 1168
BstF5I GGATG 4 cut(s) 298, 478, 550, 946
BstH2I RGCGCY 2 cut(s) 111, 216
BstHHI GCGC 2 cut(s) 110, 215
BstKTI GATC 1 cut(s) 727
BstMAI GTCTC 2 cut(s) 229, 376
BstMBI GATC 1 cut(s) 724
BstNI CCWGG 2 cut(s) 692, 822
BstNSI RCATGY 2 cut(s) 768, 984
BstSCI CCNGG 3 cut(s) 493, 690, 820
BstSFI CTRYAG 2 cut(s) 788, 948
BstSLI GKGCMC 1 cut(s) 481
BstV1I GCAGC 3 cut(s) 338, 802, 996
BstV2I GAAGAC 2 cut(s) 80, 178
BstX2I RGATCY 1 cut(s) 724
BstYI RGATCY 1 cut(s) 724
Bsu36I CCTNAGG 2 cut(s) 534, 1037
BsuI GTATCC 1 cut(s) 828
BsuRI GGCC 6 cut(s) 123, 234, 299, 438, 831, 1035
BtgI CCRYGG 1 cut(s) 1168
BtsCI GGATG 4 cut(s) 298, 478, 550, 946
Cac8I GCNNGC 7 cut(s) 112, 121, 276, 858, 982, 1033, 1175
CfoI GCGC 2 cut(s) 110, 215
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 3 cut(s) 830, 869, 1011
CseI GACGC 1 cut(s) 211
Csp6I GTAC 3 cut(s) 94, 491, 1165
CviAII CATG 8 cut(s) 397, 406, 765, 805, 897, 981, 1064, 1169
CviQI GTAC 3 cut(s) 94, 491, 1165
DdeI CTNAG 6 cut(s) 19, 72, 534, 580, 735, 1037
DpnI GATC 1 cut(s) 726
DpnII GATC 1 cut(s) 724
Eam1104I CTCTTC 4 cut(s) 49, 65, 364, 581
EarI CTCTTC 4 cut(s) 49, 65, 364, 581
Ecl136II GAGCTC 1 cut(s) 739
Eco130I CCWWGG 4 cut(s) 159, 865, 1026, 1168
Eco147I AGGCCT 1 cut(s) 299
Eco24I GRGCYC 2 cut(s) 741, 893
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 2 cut(s) 869, 1011
Eco53kI GAGCTC 1 cut(s) 739
Eco57I CTGAAG 1 cut(s) 167
Eco81I CCTNAGG 2 cut(s) 534, 1037
EcoICRI GAGCTC 1 cut(s) 739
EcoO109I RGGNCCY 1 cut(s) 869
EcoRII CCWGG 2 cut(s) 690, 820
EcoT14I CCWWGG 4 cut(s) 159, 865, 1026, 1168
EcoT38I GRGCYC 2 cut(s) 741, 893
ErhI CCWWGG 4 cut(s) 159, 865, 1026, 1168
Esp3I CGTCTC 1 cut(s) 229
FaeI CATG 8 cut(s) 400, 409, 768, 808, 900, 984, 1067, 1172
FalI AAGNNNNNCTT 2 cut(s) 1188, 1220
FaqI GGGAC 1 cut(s) 141
FatI CATG 8 cut(s) 396, 405, 764, 804, 896, 980, 1063, 1168
FauNDI CATATG 1 cut(s) 1231
Fnu4HI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 791, 985
FokI GGATG 4 cut(s) 305, 485, 537, 953
FriOI GRGCYC 2 cut(s) 741, 893
Fsp4HI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 791, 985
FspBI CTAG 2 cut(s) 671, 710
GlaI GCGC 2 cut(s) 109, 214
GluI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 791, 985
GsaI CCCAGC 1 cut(s) 292
HaeII RGCGCY 2 cut(s) 111, 216
HaeIII GGCC 6 cut(s) 123, 234, 299, 438, 831, 1035
HapII CCGG 4 cut(s) 120, 219, 228, 495
HgaI GACGC 1 cut(s) 211
HhaI GCGC 2 cut(s) 110, 215
Hin1I GRCGYC 2 cut(s) 183, 222
Hin1II CATG 8 cut(s) 400, 409, 768, 808, 900, 984, 1067, 1172
Hin6I GCGC 2 cut(s) 108, 213
HinP1I GCGC 2 cut(s) 108, 213
HinfI GANTC 6 cut(s) 76, 154, 164, 169, 201, 653
HpaII CCGG 4 cut(s) 120, 219, 228, 495
HphI GGTGA 3 cut(s) 233, 498, 610
Hpy166II GTNNAC 1 cut(s) 506
Hpy188I TCNGA 4 cut(s) 75, 200, 346, 847
Hpy188III TCNNGA 6 cut(s) 379, 566, 618, 734, 797, 912
Hpy8I GTNNAC 1 cut(s) 506
Hpy99I CGWCG 3 cut(s) 134, 185, 320
HpyAV CCTTC 3 cut(s) 90, 245, 674
HpyCH4III ACNGT 1 cut(s) 510
HpyCH4IV ACGT 3 cut(s) 183, 315, 518
HpyCH4V TGCA 9 cut(s) 450, 572, 640, 646, 768, 782, 790, 984, 1122
HpyF3I CTNAG 6 cut(s) 19, 72, 534, 580, 735, 1037
HpySE526I ACGT 3 cut(s) 183, 315, 518
Hsp92I GRCGYC 2 cut(s) 183, 222
Hsp92II CATG 8 cut(s) 400, 409, 768, 808, 900, 984, 1067, 1172
HspAI GCGC 2 cut(s) 108, 213
KroI GCCGGC 1 cut(s) 119
KroNI GCCGGC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 724
LmnI GCTCC 4 cut(s) 270, 358, 713, 1022
Lsp1109I GCAGC 3 cut(s) 338, 802, 996
LweI GCATC 6 cut(s) 186, 340, 384, 507, 559, 838
MaeI CTAG 2 cut(s) 671, 710
MaeII ACGT 3 cut(s) 183, 315, 518
MaeIII GTNAC 1 cut(s) 1068
MalI GATC 1 cut(s) 726
MboI GATC 1 cut(s) 724
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 3 cut(s) 481, 741, 893
MluCI AATT 6 cut(s) 635, 699, 916, 1220, 1224, 1235
MlyI GAGTC 4 cut(s) 85, 158, 163, 647
MmeI TCCRAC 1 cut(s) 178
MroNI GCCGGC 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 1224
MseI TTAA 5 cut(s) 26, 543, 960, 1223, 1238
MslI CAYNNNNRTG 2 cut(s) 410, 901
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 4 cut(s) 120, 219, 228, 495
MspR9I CCNGG 3 cut(s) 495, 692, 822
MvaI CCWGG 2 cut(s) 692, 822
NaeI GCCGGC 1 cut(s) 121
NciI CCSGG 1 cut(s) 495
NcoI CCATGG 1 cut(s) 1168
NdeI CATATG 1 cut(s) 1231
NdeII GATC 1 cut(s) 724
NgoMIV GCCGGC 1 cut(s) 119
NlaIII CATG 8 cut(s) 400, 409, 768, 808, 900, 984, 1067, 1172
NlaIV GGNNCC 4 cut(s) 478, 715, 832, 1024
NmeAIII GCCGAG 2 cut(s) 84, 307
NmuCI GTSAC 1 cut(s) 1068
NspI RCATGY 2 cut(s) 768, 984
PaeI GCATGC 1 cut(s) 984
PceI AGGCCT 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdiI GCCGGC 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 1224
PfeI GAWTC 2 cut(s) 169, 201
PflMI CCANNNNNTGG 1 cut(s) 827
PkrI GCNGC 7 cut(s) 209, 212, 233, 280, 328, 792, 986
PleI GAGTC 4 cut(s) 84, 158, 162, 647
PpsI GAGTC 4 cut(s) 84, 158, 162, 647
PpuMI RGGWCCY 1 cut(s) 869
PshBI ATTAAT 1 cut(s) 1223
Psp124BI GAGCTC 1 cut(s) 741
Psp5II RGGWCCY 1 cut(s) 869
Psp6I CCWGG 2 cut(s) 690, 820
PspFI CCCAGC 1 cut(s) 288
PspGI CCWGG 2 cut(s) 690, 820
PspN4I GGNNCC 4 cut(s) 478, 715, 832, 1024
PspPI GGNCC 3 cut(s) 830, 869, 1011
PspPPI RGGWCCY 1 cut(s) 869
PstI CTGCAG 1 cut(s) 792
PsuI RGATCY 1 cut(s) 724
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 3 cut(s) 95, 492, 1166
RsaNI GTAC 3 cut(s) 94, 491, 1165
RseI CAYNNNNRTG 2 cut(s) 410, 901
SacI GAGCTC 1 cut(s) 741
SaqAI TTAA 5 cut(s) 26, 543, 960, 1223, 1238
SatI GCNGC 7 cut(s) 208, 211, 232, 279, 327, 791, 985
Sau3AI GATC 1 cut(s) 724
Sau96I GGNCC 3 cut(s) 830, 869, 1011
SchI GAGTC 4 cut(s) 85, 158, 163, 647
ScrFI CCNGG 3 cut(s) 495, 692, 822
SduI GDGCHC 3 cut(s) 481, 741, 893
SfaNI GCATC 6 cut(s) 186, 340, 384, 507, 559, 838
SfcI CTRYAG 2 cut(s) 788, 948
SinI GGWCC 2 cut(s) 869, 1011
SmiMI CAYNNNNRTG 2 cut(s) 410, 901
SmlI CTYRAG 2 cut(s) 301, 379
SmoI CTYRAG 2 cut(s) 301, 379
SphI GCATGC 1 cut(s) 984
Sse9I AATT 6 cut(s) 635, 699, 916, 1220, 1224, 1235
SseBI AGGCCT 1 cut(s) 299
SsiI CCGC 8 cut(s) 4, 175, 207, 210, 231, 279, 695, 938
SspI AATATT 1 cut(s) 840
SspMI CTAG 2 cut(s) 671, 710
SstI GAGCTC 1 cut(s) 741
StuI AGGCCT 1 cut(s) 299
StyD4I CCNGG 3 cut(s) 493, 690, 820
StyI CCWWGG 4 cut(s) 159, 865, 1026, 1168
TaaI ACNGT 1 cut(s) 510
TaiI ACGT 3 cut(s) 186, 318, 521
TaqI TCGA 4 cut(s) 167, 180, 189, 567
TasI AATT 6 cut(s) 635, 699, 916, 1220, 1224, 1235
TauI GCSGC 4 cut(s) 210, 213, 234, 281
TfiI GAWTC 2 cut(s) 169, 201
Tru1I TTAA 5 cut(s) 26, 543, 960, 1223, 1238
Tru9I TTAA 5 cut(s) 26, 543, 960, 1223, 1238
TseFI GTSAC 1 cut(s) 1068
TseI GCWGC 3 cut(s) 326, 790, 984
Tsp45I GTSAC 1 cut(s) 1068
TspDTI ATGAA 6 cut(s) 207, 413, 909, 957, 1230, 1248
TspGWI ACGGA 1 cut(s) 118
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 2 cut(s) 869, 1011
VspI ATTAAT 1 cut(s) 1223
XapI RAATTY 1 cut(s) 916
XceI RCATGY 2 cut(s) 768, 984
XcmI CCANNNNNNNNNTGG 1 cut(s) 1175
XmnI GAANNNNTTC 1 cut(s) 1224
XspI CTAG 2 cut(s) 671, 710
ZraI GACGTC 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.