Rh2DG019000

FAD-NAD(P)-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007219
Physical Location & Seq
Reverse (-)
1097380 .. 1099140
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG019000.1

Sequence Viewer

Length: 720 bp
ATGCCTGAAGCTGTTAATGTCCATCCTCAATGCTATCTCGAGGCACTCTTCTTAGCATGTCAAACTTTGTGCTTCTGGATTGGGGGTAAAAGAATTGCATTTGCACAAGGACTCCATTCACAAACTGCTAGACTTGGAAGGGGAATACCAGGTATTGTATGTCTAGGAGCCAAAGCAGATCTGCTTCCTGAGCTCTCTGGGAGGCTTCCATTGAGGACATGCAGAGGTGTCGTTGCACATCTGCAGCTTCCTGATAATATGGGAGGGGAGTATCCAGGCTTTGGCCCCTCAATATTGTCAGATGCTTGGCTTGCTGTCCAAGGACCTCGTAGTTTGTATATGGGCTCGACATGGGAATGGAAATCAAGAAATTCATCATCAAATGTATCTGCAGATGAAGCTGCAGAAGCCCTTAAAGAGCTTCTACCAAAGGCATGCAGCATCTATCCGGTTGTCAAAGATTGGACCTTTATTGGAGCGAGGGCTGGCCTTAGGGCAATGCCACCACTCACTCCTCATGGGTCACTTCCTCTTTTGGGTTGTGTCAATAACATTATAGGTCAAAATCAAACTTGCAAATACTGGTTATTTGGAGGGCTTGGTTCAAGGGGATTGTTGTACCATGGTTGGCTTGGGAAGTTGATGGCACAAGCTGTGCTTTCGTGTAACGAAGAATTAATTCCATATGAATTAACCTCTTGGAAAAGAACAAAACAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DAO

Protein Analysis

239

Amino Acids

26.05

Weight (kDa)

8.87

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 42 - 217 4.6e-14 FAD dependent oxidoreductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 281
AcsI RAATTY 1 cut(s) 370
AcuI CTGAAG 1 cut(s) 27
AfaI GTAC 1 cut(s) 620
AfiI CCNNNNNNNGG 2 cut(s) 281, 536
AgsI TTSAA 1 cut(s) 606
AjnI CCWGG 2 cut(s) 148, 274
AluBI AGCT 6 cut(s) 11, 193, 247, 401, 421, 653
AluI AGCT 6 cut(s) 11, 193, 247, 401, 421, 653
Alw21I GWGCWC 1 cut(s) 195
Ama87I CYCGRG 1 cut(s) 38
AoxI GGCC 2 cut(s) 283, 487
ApeKI GCWGC 3 cut(s) 244, 401, 438
ApoI RAATTY 1 cut(s) 370
AseI ATTAAT 1 cut(s) 677
Asp700I GAANNNNTTC 1 cut(s) 678
AspS9I GGNCC 3 cut(s) 284, 323, 465
AvaI CYCGRG 1 cut(s) 38
AvaII GGWCC 2 cut(s) 323, 465
AxyI CCTNAGG 1 cut(s) 491
BanII GRGCYC 2 cut(s) 195, 347
Bbv12I GWGCWC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 256, 388, 450
BccI CCATC 2 cut(s) 30, 637
BcgI CGANNNNNNTGC 2 cut(s) 211, 245
BciT130I CCWGG 2 cut(s) 150, 276
BciVI GTATCC 1 cut(s) 282
BfaI CTAG 2 cut(s) 129, 164
BfmI CTRYAG 3 cut(s) 242, 390, 402
BfuI GTATCC 1 cut(s) 282
BglII AGATCT 1 cut(s) 178
BisI GCNGC 3 cut(s) 245, 402, 439
BlsI GCNGC 3 cut(s) 246, 403, 440
Bme1390I CCNGG 2 cut(s) 150, 276
Bme18I GGWCC 2 cut(s) 323, 465
BmeT110I CYCGRG 1 cut(s) 38
BmgT120I GGNCC 3 cut(s) 284, 323, 465
BmiI GGNNCC 2 cut(s) 169, 286
BmrFI CCNGG 2 cut(s) 150, 276
BmsI GCATC 2 cut(s) 292, 450
Bpu10I CCTNAGC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 319, 622
BsaWI WCCGGW 1 cut(s) 448
BsaXI ACNNNNNCTCC 2 cut(s) 96, 126
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 536
Bse1I ACTGG 1 cut(s) 587
Bse21I CCTNAGG 1 cut(s) 491
Bse3DI GCAATG 1 cut(s) 504
BseBI CCWGG 2 cut(s) 150, 276
BseDI CCNNGG 2 cut(s) 319, 622
BseGI GGATG 1 cut(s) 22
BseLI CCNNNNNNNGG 2 cut(s) 281, 536
BseMI GCAATG 1 cut(s) 504
BseMII CTCAG 1 cut(s) 180
BseNI ACTGG 1 cut(s) 587
BseRI GAGGAG 1 cut(s) 504
BseXI GCAGC 3 cut(s) 256, 388, 450
BshFI GGCC 2 cut(s) 285, 489
BsiHKAI GWGCWC 1 cut(s) 195
BsiHKCI CYCGRG 1 cut(s) 38
BsiSI CCGG 1 cut(s) 449
BslI CCNNNNNNNGG 2 cut(s) 281, 536
BsnI GGCC 2 cut(s) 285, 489
BsoBI CYCGRG 1 cut(s) 38
Bsp1286I GDGCHC 2 cut(s) 195, 347
Bsp143I GATC 1 cut(s) 178
Bsp19I CCATGG 1 cut(s) 622
BspANI GGCC 2 cut(s) 285, 489
BspCNI CTCAG 1 cut(s) 181
BspLI GGNNCC 2 cut(s) 169, 286
BspMAI CTGCAG 3 cut(s) 246, 394, 406
BsrDI GCAATG 1 cut(s) 504
BsrI ACTGG 1 cut(s) 587
BssECI CCNNGG 2 cut(s) 319, 622
BssMI GATC 1 cut(s) 178
BssT1I CCWWGG 2 cut(s) 319, 622
Bst2UI CCWGG 2 cut(s) 150, 276
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 3 cut(s) 312, 436, 487
BstDEI CTNAG 3 cut(s) 52, 189, 491
BstDSI CCRYGG 1 cut(s) 622
BstF5I GGATG 1 cut(s) 22
BstKTI GATC 1 cut(s) 181
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 4 cut(s) 190, 311, 398, 407
BstNI CCWGG 2 cut(s) 150, 276
BstNSI RCATGY 3 cut(s) 60, 222, 438
BstSCI CCNGG 2 cut(s) 148, 274
BstSFI CTRYAG 3 cut(s) 242, 390, 402
BstV1I GCAGC 3 cut(s) 256, 388, 450
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
Bsu36I CCTNAGG 1 cut(s) 491
BsuI GTATCC 1 cut(s) 282
BsuRI GGCC 2 cut(s) 285, 489
BtgI CCRYGG 1 cut(s) 622
BtsCI GGATG 1 cut(s) 22
Cac8I GCNNGC 3 cut(s) 312, 436, 487
Cfr13I GGNCC 3 cut(s) 284, 323, 465
CsiI ACCWGGT 1 cut(s) 148
Csp6I GTAC 1 cut(s) 619
CviAII CATG 6 cut(s) 57, 219, 351, 435, 518, 623
CviQI GTAC 1 cut(s) 619
DdeI CTNAG 3 cut(s) 52, 189, 491
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 319, 622
Eco24I GRGCYC 2 cut(s) 195, 347
Eco47I GGWCC 2 cut(s) 323, 465
Eco53kI GAGCTC 1 cut(s) 193
Eco57I CTGAAG 1 cut(s) 27
Eco81I CCTNAGG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 38
EcoICRI GAGCTC 1 cut(s) 193
EcoO109I RGGNCCY 1 cut(s) 323
EcoRII CCWGG 2 cut(s) 148, 274
EcoT14I CCWWGG 2 cut(s) 319, 622
EcoT38I GRGCYC 2 cut(s) 195, 347
ErhI CCWWGG 2 cut(s) 319, 622
FaeI CATG 6 cut(s) 60, 222, 354, 438, 521, 626
FalI AAGNNNNNCTT 2 cut(s) 642, 674
FatI CATG 6 cut(s) 56, 218, 350, 434, 517, 622
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 3 cut(s) 245, 402, 439
FokI GGATG 1 cut(s) 9
FriOI GRGCYC 2 cut(s) 195, 347
Fsp4HI GCNGC 3 cut(s) 245, 402, 439
FspBI CTAG 2 cut(s) 129, 164
GluI GCNGC 3 cut(s) 245, 402, 439
HaeIII GGCC 2 cut(s) 285, 489
HapII CCGG 1 cut(s) 449
Hin1II CATG 6 cut(s) 60, 222, 354, 438, 521, 626
HinfI GANTC 1 cut(s) 111
HpaII CCGG 1 cut(s) 449
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 5 cut(s) 38, 76, 188, 251, 366
HpyAV CCTTC 1 cut(s) 132
HpyCH4V TGCA 9 cut(s) 98, 104, 222, 236, 244, 392, 404, 438, 576
HpyF10VI GCNNNNNNNGC 4 cut(s) 190, 311, 398, 407
HpyF3I CTNAG 3 cut(s) 52, 189, 491
Hsp92II CATG 6 cut(s) 60, 222, 354, 438, 521, 626
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 2 cut(s) 167, 476
Lsp1109I GCAGC 3 cut(s) 256, 388, 450
LweI GCATC 2 cut(s) 292, 450
MabI ACCWGGT 1 cut(s) 148
MaeI CTAG 2 cut(s) 129, 164
MaeIII GTNAC 2 cut(s) 522, 665
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 40, 683
MflI RGATCY 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 195, 347
MluCI AATT 5 cut(s) 93, 370, 674, 678, 689
MlyI GAGTC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 4 cut(s) 15, 414, 677, 692
MslI CAYNNNNRTG 1 cut(s) 355
MspI CCGG 1 cut(s) 449
MspR9I CCNGG 2 cut(s) 150, 276
MvaI CCWGG 2 cut(s) 150, 276
MwoI GCNNNNNNNGC 4 cut(s) 190, 311, 398, 407
NcoI CCATGG 1 cut(s) 622
NdeI CATATG 1 cut(s) 685
NdeII GATC 1 cut(s) 178
NlaIII CATG 6 cut(s) 60, 222, 354, 438, 521, 626
NlaIV GGNNCC 2 cut(s) 169, 286
NmuCI GTSAC 1 cut(s) 522
NspI RCATGY 3 cut(s) 60, 222, 438
PaeI GCATGC 1 cut(s) 438
PaeR7I CTCGAG 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 678
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 3 cut(s) 246, 403, 440
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PpuMI RGGWCCY 1 cut(s) 323
PshBI ATTAAT 1 cut(s) 677
Psp124BI GAGCTC 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 323
Psp6I CCWGG 2 cut(s) 148, 274
PspGI CCWGG 2 cut(s) 148, 274
PspN4I GGNNCC 2 cut(s) 169, 286
PspPI GGNCC 3 cut(s) 284, 323, 465
PspPPI RGGWCCY 1 cut(s) 323
PstI CTGCAG 3 cut(s) 246, 394, 406
PsuI RGATCY 1 cut(s) 178
RsaI GTAC 1 cut(s) 620
RsaNI GTAC 1 cut(s) 619
RseI CAYNNNNRTG 1 cut(s) 355
SacI GAGCTC 1 cut(s) 195
SaqAI TTAA 4 cut(s) 15, 414, 677, 692
SatI GCNGC 3 cut(s) 245, 402, 439
Sau3AI GATC 1 cut(s) 178
Sau96I GGNCC 3 cut(s) 284, 323, 465
SchI GAGTC 1 cut(s) 105
ScrFI CCNGG 2 cut(s) 150, 276
SduI GDGCHC 2 cut(s) 195, 347
SexAI ACCWGGT 1 cut(s) 148
SfaNI GCATC 2 cut(s) 292, 450
SfcI CTRYAG 3 cut(s) 242, 390, 402
Sfr274I CTCGAG 1 cut(s) 38
SinI GGWCC 2 cut(s) 323, 465
SlaI CTCGAG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 355
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SphI GCATGC 1 cut(s) 438
Sse9I AATT 5 cut(s) 93, 370, 674, 678, 689
SspI AATATT 1 cut(s) 294
SspMI CTAG 2 cut(s) 129, 164
SstI GAGCTC 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 148, 274
StyI CCWWGG 2 cut(s) 319, 622
TaqI TCGA 2 cut(s) 39, 347
TasI AATT 5 cut(s) 93, 370, 674, 678, 689
Tru1I TTAA 4 cut(s) 15, 414, 677, 692
Tru9I TTAA 4 cut(s) 15, 414, 677, 692
TseFI GTSAC 1 cut(s) 522
TseI GCWGC 3 cut(s) 244, 401, 438
Tsp45I GTSAC 1 cut(s) 522
TspDTI ATGAA 3 cut(s) 363, 411, 702
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 2 cut(s) 323, 465
VspI ATTAAT 1 cut(s) 677
XapI RAATTY 1 cut(s) 370
XceI RCATGY 3 cut(s) 60, 222, 438
XcmI CCANNNNNNNNNTGG 1 cut(s) 629
XhoI CTCGAG 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 2 cut(s) 129, 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.