Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0010359

Physical Location & Seq

Genomic Coordinates Forward (+)

21814165 .. 21817173

Gene Structure 3009 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G263000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGAGTGTTTCTTTGACTGTGATGACCTTCAATCTTCATGAAGATCAGACGGAAGATAGTCCTTACTCATGGGAAAAGAGAAGGGATTTGTGTATAAGCGTCATTACTAGTTATTCTCCAATGATTCTATGTACCCAACAAGGAGTTAAATCACAATTGGATTATCTTCGCCAGTGTTTGCCAGGTTATGATCAATTTGGAATATCAAGAAAAGGACCTGAAGACACTTCTGATGAACATTGCACCATCTTCTATGACAAGGAGAAGGTGGAGCTGCTTGAAGGTGGAACATTTTGGTTGTCTGAATCACCTTCTGTGCCTGGAAGCATGTCATGGGGCTCCGTAGTTCCATGTATTGCAACATGGGTGACATTTCAACTGAAAGGAGTTGAGCCACCTGGGTTTTCATTCCAGATAGTAAATACAAACATGGATGAGTTCAGTCCTCGTGCCCGTAGGCGAAGTGCTTTGCTCACATGGCAGCACATCGCATCCTTACCACCTAGCCTGCCAGTTGTATATTGTGGAGGATTCAACACACAAAAGGAATCAACAGCCGGGCGATTTCTTTTGGGGAGATCAAGAGAGCACGGTGCAGTTGGGGATATGAGGGATACATGGCCTAATGCCCGTGTGAGGAAAAATGTCTCTCTTATTCGCACTTTTCATGGATTTAAAGGTGACAAACAAGGAGCTCTTGAATTCCTCAAGTTGATTTTCAGAGCCCTCTGCCTTTGTTGGGATCGCCAAACACAGGATCTGCACATAGATTGGATTCTTTTTAGAGGTAGATCTCTTATTCCTGTTCTGTGTGAAGTGGTGAATGATAACATTGATGGATATTATCCATCCTCCCACTATCCCATATTTGCTGAGTTTCTGCTTCCTCGTACTGTGAGAGTGCTTGACCCACCTGCTCGTGAAGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

311

Amino Acids

35.35

Weight (kDa)

6.18

Isoelectric Point (pI)

56.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30900 AT4G30900 AT4G30900
fragaria_vesca	FvH4_1g00920
malus_domestica	MD02G1007400.v1.1 MD15G1144700.v1.1
prunus_persica	Prupe.7G263000_v2.0.a1
pyrus_communis	pycom02g00640 pycom15g13630
rosa_chinensis	RchiOBHm_Chr2g0085611
rosa_laevigata	RLG00000015706
rosa_multiflora	Rmu_co8451807.1_g000001 Rmu_sc0006261.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155180
rosa_rugosa	Rorug01G0461500 Rorug01G0461600
rosa_samantha	Rh2AG010900 Rh2BG011400 Rh2CG012200 Rh2DG013300
rosa_wichuraiana	Rw2G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	922
Acc36I	ACCTGC	1 cut(s)	922
AclWI	GGATC	2 cut(s)	750, 765
AcsI	RAATTY	2 cut(s)	701, 927
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	133, 892
AfiI	CCNNNNNNNGG	3 cut(s)	636, 739, 754
AgsI	TTSAA	5 cut(s)	31, 281, 377, 535, 701
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	3 cut(s)	181, 319, 397
AluBI	AGCT	2 cut(s)	274, 695
AluI	AGCT	2 cut(s)	274, 695
Alw21I	GWGCWC	2 cut(s)	591, 697
Alw26I	GTCTC	1 cut(s)	652
AlwI	GGATC	2 cut(s)	750, 765
AlwNI	CAGNNNCTG	1 cut(s)	760
AoxI	GGCC	1 cut(s)	620
ApeKI	GCWGC	2 cut(s)	274, 481
ApoI	RAATTY	2 cut(s)	701, 927
AspS9I	GGNCC	1 cut(s)	215
AsuC2I	CCSGG	1 cut(s)	559
AsuHPI	GGTGA	4 cut(s)	300, 379, 692, 832
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	454
BanII	GRGCYC	3 cut(s)	341, 697, 727
BauI	CACGAG	2 cut(s)	447, 918
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	2 cut(s)	591, 697
BbvI	GCAGC	2 cut(s)	261, 493
BccI	CCATC	3 cut(s)	254, 830, 856
BciT130I	CCWGG	3 cut(s)	183, 321, 399
BciVI	GTATCC	1 cut(s)	607
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	559
BcoDI	GTCTC	1 cut(s)	652
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	2 cut(s)	108, 504
BfuAI	ACCTGC	1 cut(s)	922
BfuI	GTATCC	1 cut(s)	607
BglII	AGATCT	1 cut(s)	791
BisI	GCNGC	2 cut(s)	275, 482
BlsI	GCNGC	2 cut(s)	276, 483
Bme1390I	CCNGG	4 cut(s)	183, 321, 399, 559
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	340
BmrFI	CCNGG	4 cut(s)	183, 321, 399, 559
BmsI	GCATC	1 cut(s)	500
BpiI	GAAGAC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	559
BsaJI	CCNNGG	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	3 cut(s)	636, 739, 754
Bse1I	ACTGG	2 cut(s)	172, 512
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	3 cut(s)	183, 321, 399
BseDI	CCNNGG	1 cut(s)	398
BseGI	GGATG	3 cut(s)	439, 491, 848
BseLI	CCNNNNNNNGG	3 cut(s)	636, 739, 754
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	864
BseNI	ACTGG	2 cut(s)	172, 512
BseSI	GKGCMC	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	261, 493
BsgI	GTGCAG	2 cut(s)	615, 746
BshFI	GGCC	1 cut(s)	622
BsiHKAI	GWGCWC	2 cut(s)	591, 697
BsiSI	CCGG	1 cut(s)	558
BslI	CCNNNNNNNGG	3 cut(s)	636, 739, 754
BsmAI	GTCTC	1 cut(s)	652
BsnI	GGCC	1 cut(s)	622
Bsp1286I	GDGCHC	5 cut(s)	341, 454, 591, 697, 727
Bsp143I	GATC	6 cut(s)	43, 190, 578, 742, 757, 791
BspANI	GGCC	1 cut(s)	622
BspCNI	CTCAG	1 cut(s)	865
BspHI	TCATGA	1 cut(s)	37
BspLI	GGNNCC	1 cut(s)	340
BspMI	ACCTGC	1 cut(s)	922
BspPI	GGATC	2 cut(s)	750, 765
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	172, 512
BssECI	CCNNGG	1 cut(s)	398
BssMI	GATC	6 cut(s)	43, 190, 578, 742, 757, 791
BssSI	CACGAG	2 cut(s)	447, 918
Bst2BI	CACGAG	2 cut(s)	447, 918
Bst2UI	CCWGG	3 cut(s)	183, 321, 399
Bst4CI	ACNGT	3 cut(s)	19, 593, 895
BstC8I	GCNNGC	1 cut(s)	509
BstDEI	CTNAG	1 cut(s)	873
BstF5I	GGATG	3 cut(s)	439, 491, 848
BstKTI	GATC	6 cut(s)	46, 193, 581, 745, 760, 794
BstMAI	GTCTC	1 cut(s)	652
BstMBI	GATC	6 cut(s)	43, 190, 578, 742, 757, 791
BstMWI	GCNNNNNNNGC	1 cut(s)	478
BstNI	CCWGG	3 cut(s)	183, 321, 399
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	4 cut(s)	181, 319, 397, 557
BstSLI	GKGCMC	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	261, 493
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	757, 791
BstYI	RGATCY	2 cut(s)	757, 791
BsuI	GTATCC	1 cut(s)	607
BsuRI	GGCC	1 cut(s)	622
BtgZI	GCGATG	1 cut(s)	472
BtsCI	GGATG	3 cut(s)	439, 491, 848
BtsIMutI	CAGTG	1 cut(s)	179
BveI	ACCTGC	1 cut(s)	922
Cac8I	GCNNGC	1 cut(s)	509
CaiI	CAGNNNCTG	1 cut(s)	760
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	132, 891
CviJI	RGCY	8 cut(s)	274, 339, 394, 507, 557, 622, 695, 725
CviKI_1	RGCY	8 cut(s)	274, 339, 394, 507, 557, 622, 695, 725
CviQI	GTAC	2 cut(s)	132, 891
DdeI	CTNAG	1 cut(s)	873
DpnI	GATC	6 cut(s)	45, 192, 580, 744, 759, 793
DpnII	GATC	6 cut(s)	43, 190, 578, 742, 757, 791
DraI	TTTAAA	1 cut(s)	676
Ecl136II	GAGCTC	1 cut(s)	695
Eco24I	GRGCYC	3 cut(s)	341, 697, 727
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	695
Eco57I	CTGAAG	1 cut(s)	240
EcoICRI	GAGCTC	1 cut(s)	695
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	701
EcoRII	CCWGG	3 cut(s)	181, 319, 397
EcoT38I	GRGCYC	3 cut(s)	341, 697, 727
FalI	AAGNNNNNCTT	2 cut(s)	681, 713
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	275, 482
FokI	GGATG	3 cut(s)	446, 478, 835
FriOI	GRGCYC	3 cut(s)	341, 697, 727
Fsp4HI	GCNGC	2 cut(s)	275, 482
FspBI	CTAG	2 cut(s)	108, 504
GluI	GCNGC	2 cut(s)	275, 482
HaeIII	GGCC	1 cut(s)	622
HapII	CCGG	1 cut(s)	558
HgaI	GACGC	1 cut(s)	88
HinfI	GANTC	5 cut(s)	124, 305, 531, 548, 775
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	4 cut(s)	300, 379, 692, 832
Hpy188I	TCNGA	4 cut(s)	48, 232, 304, 722
Hpy188III	TCNNGA	6 cut(s)	38, 207, 412, 582, 698, 920
HpyAV	CCTTC	5 cut(s)	37, 75, 259, 275, 321
HpyCH4III	ACNGT	3 cut(s)	19, 593, 895
HpyCH4V	TGCA	4 cut(s)	243, 359, 596, 763
HpyF10VI	GCNNNNNNNGC	1 cut(s)	478
HpyF3I	CTNAG	1 cut(s)	873
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	6 cut(s)	43, 190, 578, 742, 757, 791
LmnI	GCTCC	3 cut(s)	271, 344, 692
Lsp1109I	GCAGC	2 cut(s)	261, 493
LweI	GCATC	1 cut(s)	500
MaeI	CTAG	2 cut(s)	108, 504
MaeIII	GTNAC	2 cut(s)	367, 680
MalI	GATC	6 cut(s)	45, 192, 580, 744, 759, 793
MboI	GATC	6 cut(s)	43, 190, 578, 742, 757, 791
MboII	GAAGA	6 cut(s)	26, 53, 65, 158, 233, 241
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	2 cut(s)	757, 791
MhlI	GDGCHC	5 cut(s)	341, 454, 591, 697, 727
MluCI	AATT	4 cut(s)	155, 194, 701, 927
MnlI	CCTC	9 cut(s)	456, 521, 603, 630, 716, 737, 779, 862, 897
MseI	TTAA	2 cut(s)	147, 675
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	4 cut(s)	183, 321, 399, 559
MunI	CAATTG	1 cut(s)	155
MvaI	CCWGG	3 cut(s)	183, 321, 399
MwoI	GCNNNNNNNGC	1 cut(s)	478
NciI	CCSGG	1 cut(s)	559
NdeII	GATC	6 cut(s)	43, 190, 578, 742, 757, 791
NlaIV	GGNNCC	1 cut(s)	340
NmuCI	GTSAC	2 cut(s)	367, 680
NspI	RCATGY	1 cut(s)	331
PagI	TCATGA	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	922
PfeI	GAWTC	5 cut(s)	124, 305, 531, 548, 775
PkrI	GCNGC	2 cut(s)	276, 483
PpuMI	RGGWCCY	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	697
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	3 cut(s)	181, 319, 397
PspGI	CCWGG	3 cut(s)	181, 319, 397
PspN4I	GGNNCC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PstNI	CAGNNNCTG	1 cut(s)	760
PsuI	RGATCY	2 cut(s)	757, 791
RsaI	GTAC	2 cut(s)	133, 892
RsaNI	GTAC	2 cut(s)	132, 891
SacI	GAGCTC	1 cut(s)	697
SaqAI	TTAA	2 cut(s)	147, 675
SatI	GCNGC	2 cut(s)	275, 482
Sau3AI	GATC	6 cut(s)	43, 190, 578, 742, 757, 791
Sau96I	GGNCC	1 cut(s)	215
ScrFI	CCNGG	4 cut(s)	183, 321, 399, 559
SduI	GDGCHC	5 cut(s)	341, 454, 591, 697, 727
SfaNI	GCATC	1 cut(s)	500
SinI	GGWCC	1 cut(s)	215
SmlI	CTYRAG	1 cut(s)	707
SmoI	CTYRAG	1 cut(s)	707
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	4 cut(s)	155, 194, 701, 927
SspMI	CTAG	2 cut(s)	108, 504
SstI	GAGCTC	1 cut(s)	697
StyD4I	CCNGG	4 cut(s)	181, 319, 397, 557
TaaI	ACNGT	3 cut(s)	19, 593, 895
TasI	AATT	4 cut(s)	155, 194, 701, 927
TfiI	GAWTC	5 cut(s)	124, 305, 531, 548, 775
Tru1I	TTAA	2 cut(s)	147, 675
Tru9I	TTAA	2 cut(s)	147, 675
TscAI	CASTG	1 cut(s)	179
TseFI	GTSAC	2 cut(s)	367, 680
TseI	GCWGC	2 cut(s)	274, 481
Tsp45I	GTSAC	2 cut(s)	367, 680
TspDTI	ATGAA	5 cut(s)	26, 54, 249, 396, 656
TspGWI	ACGGA	2 cut(s)	65, 331
TspRI	CASTG	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	2 cut(s)	701, 927
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	2 cut(s)	108, 504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.