Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006261.1

Orthogroup ID

OG0010359

Physical Location & Seq

Genomic Coordinates Reverse (-)

4196 .. 6066

Gene Structure 1871 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006261.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atgagtgtttatttgactgtgatgacgttcaatcttcatgaagatccgacagcagatagttctaattcatgggaaaagagaagagatttgtgtataagcgtcgttactagttattctccgatgattctctgtactcaacaaggagctaaatcacaattggattatcttcaacaatgcttgccaggttatgaccaatttgggatatcaagaaaaggacctgaagacacttcagacgaacattgcaccatcttctatgacaaggagaaggtggaggttattgaaggtggaacattttggttgtcagagtcaccttctgtccctggaagcatgtcgtggggtgctctaatagtaaatacaaacatggatgagttcagtcctcgtgcacggaggcgaagtgctttgcttacatggcagcacattgcatccttaccacctagcttgccagttgtttattgtggagggttcaacacacaaaaggaatcaactactggtcgttttcttcttgggagatcaagagagcatggtgtggtcggtgatatgagggatacatggcctaatgcccgtgtgaggaaaaatgcttctctaattcgcacttttcatggatttaaaggtaacaaacaaggagctcttgaattcttcaagttggttttcagagccctgtgcctttgctgggatcgccaaacacaggatctacacatagattggattcttttcagaggtagatctcttgttcctgtttcgtgtgaagtggtgagtgataacattgatggacaatatccatcctcccactatccaatagttgctgagtttctgcttcctcgtgctgtgagaattgttgacccacctcctccagaggaaaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

287

Amino Acids

32.5

Weight (kDa)

6.18

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30900 AT4G30900 AT4G30900
fragaria_vesca	FvH4_1g00920
malus_domestica	MD02G1007400.v1.1 MD15G1144700.v1.1
prunus_persica	Prupe.7G263000_v2.0.a1
pyrus_communis	pycom02g00640 pycom15g13630
rosa_chinensis	RchiOBHm_Chr2g0085611
rosa_laevigata	RLG00000015706
rosa_multiflora	Rmu_co8451807.1_g000001 Rmu_sc0006261.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155180
rosa_rugosa	Rorug01G0461500 Rorug01G0461600
rosa_samantha	Rh2AG010900 Rh2BG011400 Rh2CG012200 Rh2DG013300
rosa_wichuraiana	Rw2G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	38, 681, 696
AcsI	RAATTY	1 cut(s)	632
AcuI	CTGAAG	2 cut(s)	213, 240
AfaI	GTAC	1 cut(s)	133
AfiI	CCNNNNNNNGG	3 cut(s)	567, 670, 685
AgsI	TTSAA	6 cut(s)	31, 170, 281, 466, 632, 640
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	181, 319
AluBI	AGCT	3 cut(s)	146, 438, 626
AluI	AGCT	3 cut(s)	146, 438, 626
Alw21I	GWGCWC	3 cut(s)	343, 385, 628
Alw44I	GTGCAC	1 cut(s)	381
AlwI	GGATC	3 cut(s)	38, 681, 696
AoxI	GGCC	1 cut(s)	551
ApaLI	GTGCAC	1 cut(s)	381
ApeKI	GCWGC	1 cut(s)	412
ApoI	RAATTY	1 cut(s)	632
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	3 cut(s)	300, 545, 763
AvaII	GGWCC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	628, 658
BauI	CACGAG	2 cut(s)	378, 819
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	3 cut(s)	343, 385, 628
BbvI	GCAGC	1 cut(s)	424
BccI	CCATC	3 cut(s)	254, 761, 787
BciT130I	CCWGG	2 cut(s)	183, 321
BciVI	GTATCC	1 cut(s)	538
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	2 cut(s)	108, 435
BfuI	GTATCC	1 cut(s)	538
BglII	AGATCT	1 cut(s)	722
BisI	GCNGC	1 cut(s)	413
BlsI	GCNGC	1 cut(s)	414
Bme1390I	CCNGG	2 cut(s)	183, 321
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	1 cut(s)	215
BmrFI	CCNGG	2 cut(s)	183, 321
BmsI	GCATC	1 cut(s)	431
BpiI	GAAGAC	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	834
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bsc4I	CCNNNNNNNGG	3 cut(s)	567, 670, 685
Bse1I	ACTGG	2 cut(s)	443, 493
Bse3DI	GCAATG	2 cut(s)	238, 417
BseBI	CCWGG	2 cut(s)	183, 321
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	3 cut(s)	370, 422, 779
BseLI	CCNNNNNNNGG	3 cut(s)	567, 670, 685
BseMI	GCAATG	2 cut(s)	238, 417
BseMII	CTCAG	1 cut(s)	795
BseNI	ACTGG	2 cut(s)	443, 493
BseRI	GAGGAG	1 cut(s)	837
BseSI	GKGCMC	1 cut(s)	385
BseXI	GCAGC	1 cut(s)	424
BseYI	CCCAGC	1 cut(s)	669
BshFI	GGCC	1 cut(s)	553
BsiHKAI	GWGCWC	3 cut(s)	343, 385, 628
BslFI	GGGAC	1 cut(s)	302
BslI	CCNNNNNNNGG	3 cut(s)	567, 670, 685
BsmFI	GGGAC	1 cut(s)	302
BsnI	GGCC	1 cut(s)	553
Bsp1286I	GDGCHC	4 cut(s)	343, 385, 628, 658
Bsp143I	GATC	5 cut(s)	43, 509, 673, 688, 722
BspANI	GGCC	1 cut(s)	553
BspCNI	CTCAG	1 cut(s)	796
BspHI	TCATGA	1 cut(s)	37
BspPI	GGATC	3 cut(s)	38, 681, 696
BsrDI	GCAATG	2 cut(s)	238, 417
BsrI	ACTGG	2 cut(s)	443, 493
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	5 cut(s)	43, 509, 673, 688, 722
BssSI	CACGAG	2 cut(s)	378, 819
Bst2BI	CACGAG	2 cut(s)	378, 819
Bst2UI	CCWGG	2 cut(s)	183, 321
Bst4CI	ACNGT	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	76
BstC8I	GCNNGC	2 cut(s)	179, 440
BstDEI	CTNAG	1 cut(s)	804
BstF5I	GGATG	3 cut(s)	370, 422, 779
BstKTI	GATC	5 cut(s)	46, 512, 676, 691, 725
BstMBI	GATC	5 cut(s)	43, 509, 673, 688, 722
BstMWI	GCNNNNNNNGC	2 cut(s)	409, 675
BstNI	CCWGG	2 cut(s)	183, 321
BstNSI	RCATGY	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	181, 319
BstSLI	GKGCMC	1 cut(s)	385
BstV1I	GCAGC	1 cut(s)	424
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	3 cut(s)	43, 688, 722
BstYI	RGATCY	3 cut(s)	43, 688, 722
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	1 cut(s)	553
BtsCI	GGATG	3 cut(s)	370, 422, 779
Cac8I	GCNNGC	2 cut(s)	179, 440
CciI	TCATGA	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	215
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	132
CspCI	CAANNNNNGTGG	2 cut(s)	420, 455
CviAII	CATG	8 cut(s)	38, 69, 328, 361, 408, 521, 549, 599
CviJI	RGCY	5 cut(s)	146, 438, 553, 626, 656
CviKI_1	RGCY	5 cut(s)	146, 438, 553, 626, 656
CviQI	GTAC	1 cut(s)	132
DdeI	CTNAG	1 cut(s)	804
DpnI	GATC	5 cut(s)	45, 511, 675, 690, 724
DpnII	GATC	5 cut(s)	43, 509, 673, 688, 722
DraI	TTTAAA	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	76
Ecl136II	GAGCTC	1 cut(s)	626
Eco24I	GRGCYC	2 cut(s)	628, 658
Eco32I	GATATC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	215
Eco53kI	GAGCTC	1 cut(s)	626
Eco57I	CTGAAG	2 cut(s)	213, 240
EcoICRI	GAGCTC	1 cut(s)	626
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	632
EcoRII	CCWGG	2 cut(s)	181, 319
EcoRV	GATATC	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	628, 658
FaeI	CATG	8 cut(s)	41, 72, 331, 364, 411, 524, 552, 602
FalI	AAGNNNNNCTT	2 cut(s)	612, 644
FaqI	GGGAC	1 cut(s)	302
FatI	CATG	8 cut(s)	37, 68, 327, 360, 407, 520, 548, 598
Fnu4HI	GCNGC	1 cut(s)	413
FokI	GGATG	3 cut(s)	377, 409, 766
FriOI	GRGCYC	2 cut(s)	628, 658
Fsp4HI	GCNGC	1 cut(s)	413
FspBI	CTAG	2 cut(s)	108, 435
GluI	GCNGC	1 cut(s)	413
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	1 cut(s)	553
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	8 cut(s)	41, 72, 331, 364, 411, 524, 552, 602
HincII	GTYRAC	1 cut(s)	838
HindII	GTYRAC	1 cut(s)	838
HinfI	GANTC	4 cut(s)	124, 305, 479, 706
HphI	GGTGA	3 cut(s)	300, 545, 763
Hpy166II	GTNNAC	2 cut(s)	383, 838
Hpy188I	TCNGA	6 cut(s)	48, 120, 232, 304, 653, 716
Hpy188III	TCNNGA	5 cut(s)	38, 207, 513, 629, 851
Hpy8I	GTNNAC	2 cut(s)	383, 838
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	3 cut(s)	259, 275, 321
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4IV	ACGT	1 cut(s)	26
HpyCH4V	TGCA	3 cut(s)	243, 383, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	409, 675
HpyF3I	CTNAG	1 cut(s)	804
HpySE526I	ACGT	1 cut(s)	26
Hsp92II	CATG	8 cut(s)	41, 72, 331, 364, 411, 524, 552, 602
Kzo9I	GATC	5 cut(s)	43, 509, 673, 688, 722
LmnI	GCTCC	2 cut(s)	143, 623
Lsp1109I	GCAGC	1 cut(s)	424
LweI	GCATC	1 cut(s)	431
MaeI	CTAG	2 cut(s)	108, 435
MaeII	ACGT	1 cut(s)	26
MaeIII	GTNAC	3 cut(s)	103, 306, 611
MalI	GATC	5 cut(s)	45, 511, 675, 690, 724
MboI	GATC	5 cut(s)	43, 509, 673, 688, 722
MboII	GAAGA	8 cut(s)	26, 53, 93, 158, 233, 241, 491, 628
MfeI	CAATTG	1 cut(s)	155
MflI	RGATCY	3 cut(s)	43, 688, 722
MhlI	GDGCHC	4 cut(s)	343, 385, 628, 658
MluCI	AATT	7 cut(s)	64, 155, 194, 585, 632, 831, 859
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	71
MseI	TTAA	1 cut(s)	606
MspR9I	CCNGG	2 cut(s)	183, 321
MunI	CAATTG	1 cut(s)	155
MvaI	CCWGG	2 cut(s)	183, 321
MwoI	GCNNNNNNNGC	2 cut(s)	409, 675
NdeII	GATC	5 cut(s)	43, 509, 673, 688, 722
NlaIII	CATG	8 cut(s)	41, 72, 331, 364, 411, 524, 552, 602
NmuCI	GTSAC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	331
PagI	TCATGA	1 cut(s)	37
PfeI	GAWTC	3 cut(s)	124, 479, 706
PkrI	GCNGC	1 cut(s)	414
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
PpuMI	RGGWCCY	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	628
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	181, 319
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	2 cut(s)	181, 319
PspPI	GGNCC	1 cut(s)	215
PspPPI	RGGWCCY	1 cut(s)	215
PsuI	RGATCY	3 cut(s)	43, 688, 722
RsaI	GTAC	1 cut(s)	133
RsaNI	GTAC	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	628
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	1 cut(s)	413
Sau3AI	GATC	5 cut(s)	43, 509, 673, 688, 722
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	183, 321
SduI	GDGCHC	4 cut(s)	343, 385, 628, 658
SfaNI	GCATC	1 cut(s)	431
SinI	GGWCC	1 cut(s)	215
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	7 cut(s)	64, 155, 194, 585, 632, 831, 859
SspMI	CTAG	2 cut(s)	108, 435
SstI	GAGCTC	1 cut(s)	628
StyD4I	CCNGG	2 cut(s)	181, 319
TaaI	ACNGT	1 cut(s)	19
TaiI	ACGT	1 cut(s)	29
TasI	AATT	7 cut(s)	64, 155, 194, 585, 632, 831, 859
TatI	WGTACW	1 cut(s)	131
TfiI	GAWTC	3 cut(s)	124, 479, 706
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	4 cut(s)	26, 54, 57, 587
TspGWI	ACGGA	1 cut(s)	400
VneI	GTGCAC	1 cut(s)	381
VpaK11BI	GGWCC	1 cut(s)	215
XapI	RAATTY	1 cut(s)	632
XceI	RCATGY	1 cut(s)	331
XspI	CTAG	2 cut(s)	108, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.