Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010359

Physical Location & Seq

Genomic Coordinates Reverse (-)

350350 .. 351600

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g00640.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTATTGCAACATGGTTCAACTGAAAGGAGCTGAGCCACCTGGATTTTCCTTCCAGATAGTAAATACAAACATGGATGAGTTCAGTGCTCGTGCTCGTCGACGAAGTGCTTTGCTCACATGGCAGCACATAGCGTCCTTACCACCTGGCTTGCCAGTTGTATATTGTGGAGGCTTCAACACACAAAAGGAATCAACTACCGGCCGGTTTCTTTTGGGGAGATCAAGAGAGCACGGTGCAGTGGGGGATATGAGGGATGCATGGCCTAATGCTCGTGTGAGGAAAAATGCCTCTCTCATTCGCACTTTCCATGGATTTAAAGGTGACAAACAAGGAGCTCTTGAATTCCTCAAGTTGATTTTCAGAGCACTCTGCCCCTGCTGGGATCGACAAACACAGGATCTACATGTAGATTGGATTCTTTTTAGAGGTAGATCTCTTATCCCTGTCTTGTGTGAAGTGGTGAGTGATAACATTGATGGATATTACCCATCCTCGCACTATCCCATATTTGCCGAGTTTATGCTTCCTCGTACGGTGAGAATGATTGACCCGCCTGCTCCGGAGGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

192

Amino Acids

21.76

Weight (kDa)

8.9

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30900 AT4G30900 AT4G30900
fragaria_vesca	FvH4_1g00920
malus_domestica	MD02G1007400.v1.1 MD15G1144700.v1.1
prunus_persica	Prupe.7G263000_v2.0.a1
pyrus_communis	pycom02g00640 pycom15g13630
rosa_chinensis	RchiOBHm_Chr2g0085611
rosa_laevigata	RLG00000015706
rosa_multiflora	Rmu_co8451807.1_g000001 Rmu_sc0006261.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155180
rosa_rugosa	Rorug01G0461500 Rorug01G0461600
rosa_samantha	Rh2AG010900 Rh2BG011400 Rh2CG012200 Rh2DG013300
rosa_wichuraiana	Rw2G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	100
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	2 cut(s)	393, 408
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	344
AfaI	GTAC	1 cut(s)	535
AfiI	CCNNNNNNNGG	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	20, 178, 344
AjnI	CCWGG	2 cut(s)	40, 145
AluBI	AGCT	2 cut(s)	32, 338
AluI	AGCT	2 cut(s)	32, 338
Alw21I	GWGCWC	5 cut(s)	91, 97, 234, 340, 370
AlwI	GGATC	2 cut(s)	393, 408
Aor13HI	TCCGGA	1 cut(s)	562
AoxI	GGCC	2 cut(s)	202, 263
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	344
AsuHPI	GGTGA	3 cut(s)	335, 475, 550
BanII	GRGCYC	1 cut(s)	340
BauI	CACGAG	2 cut(s)	90, 273
Bbv12I	GWGCWC	5 cut(s)	91, 97, 234, 340, 370
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	473, 499
BciT130I	CCWGG	2 cut(s)	42, 147
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	1 cut(s)	125
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	42, 147
BmrFI	CCNGG	2 cut(s)	42, 147
BmsI	GCATC	1 cut(s)	247
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	310
BsaWI	WCCGGW	1 cut(s)	562
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse118I	RCCGGY	2 cut(s)	200, 204
Bse1I	ACTGG	1 cut(s)	155
BseAI	TCCGGA	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	42, 147
BseDI	CCNNGG	1 cut(s)	310
BseGI	GGATG	3 cut(s)	82, 262, 491
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	155
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	204, 265
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	5 cut(s)	91, 97, 234, 340, 370
BsiSI	CCGG	3 cut(s)	201, 205, 563
BsiWI	CGTACG	1 cut(s)	533
BslI	CCNNNNNNNGG	1 cut(s)	382
BsnI	GGCC	2 cut(s)	204, 265
Bsp1286I	GDGCHC	5 cut(s)	91, 97, 234, 340, 370
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	4 cut(s)	221, 385, 400, 434
Bsp1720I	GCTNAGC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	2 cut(s)	204, 265
BspCNI	CTCAG	1 cut(s)	25
BspEI	TCCGGA	1 cut(s)	562
BspPI	GGATC	2 cut(s)	393, 408
BsrFI	RCCGGY	2 cut(s)	200, 204
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	2 cut(s)	200, 204
BssECI	CCNNGG	1 cut(s)	310
BssMI	GATC	4 cut(s)	221, 385, 400, 434
BssSI	CACGAG	2 cut(s)	90, 273
BssT1I	CCWWGG	1 cut(s)	310
Bst2BI	CACGAG	2 cut(s)	90, 273
Bst2UI	CCWGG	2 cut(s)	42, 147
Bst4CI	ACNGT	2 cut(s)	236, 538
BstC8I	GCNNGC	2 cut(s)	152, 558
BstDEI	CTNAG	1 cut(s)	33
BstDSI	CCRYGG	1 cut(s)	310
BstF5I	GGATG	3 cut(s)	82, 262, 491
BstKTI	GATC	4 cut(s)	224, 388, 403, 437
BstMBI	GATC	4 cut(s)	221, 385, 400, 434
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	2 cut(s)	42, 147
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	40, 145
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	2 cut(s)	400, 434
BstYI	RGATCY	2 cut(s)	400, 434
BstZI	CGGCCG	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	204, 265
BtgI	CCRYGG	1 cut(s)	310
BtsCI	GGATG	3 cut(s)	82, 262, 491
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	91, 246
Cac8I	GCNNGC	2 cut(s)	152, 558
Cfr10I	RCCGGY	2 cut(s)	200, 204
CseI	GACGC	1 cut(s)	123
Csp6I	GTAC	1 cut(s)	534
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	6 cut(s)	13, 73, 120, 261, 311, 407
CviJI	RGCY	7 cut(s)	32, 37, 150, 174, 204, 265, 338
CviKI_1	RGCY	7 cut(s)	32, 37, 150, 174, 204, 265, 338
CviQI	GTAC	1 cut(s)	534
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	4 cut(s)	223, 387, 402, 436
DpnII	GATC	4 cut(s)	221, 385, 400, 434
DraI	TTTAAA	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	202
EagI	CGGCCG	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	338
EclXI	CGGCCG	1 cut(s)	202
Eco130I	CCWWGG	1 cut(s)	310
Eco24I	GRGCYC	1 cut(s)	340
Eco52I	CGGCCG	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	338
EcoICRI	GAGCTC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	40, 145
EcoT14I	CCWWGG	1 cut(s)	310
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	1 cut(s)	310
FaeI	CATG	6 cut(s)	16, 76, 123, 264, 314, 410
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	6 cut(s)	12, 72, 119, 260, 310, 406
FauI	CCCGC	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	3 cut(s)	89, 269, 478
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	125
GluI	GCNGC	1 cut(s)	125
GsaI	CCCAGC	1 cut(s)	385
HaeIII	GGCC	2 cut(s)	204, 265
HapII	CCGG	3 cut(s)	201, 205, 563
HgaI	GACGC	1 cut(s)	123
Hin1II	CATG	6 cut(s)	16, 76, 123, 264, 314, 410
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	191, 418
HpaII	CCGG	3 cut(s)	201, 205, 563
HphI	GGTGA	3 cut(s)	335, 475, 550
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	4 cut(s)	55, 225, 341, 563
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	102, 105
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	2 cut(s)	236, 538
HpyCH4V	TGCA	3 cut(s)	9, 239, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	6 cut(s)	16, 76, 123, 264, 314, 410
Kpn2I	TCCGGA	1 cut(s)	562
Kzo9I	GATC	4 cut(s)	221, 385, 400, 434
LmnI	GCTCC	3 cut(s)	29, 335, 565
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	4 cut(s)	223, 387, 402, 436
MboI	GATC	4 cut(s)	221, 385, 400, 434
MflI	RGATCY	2 cut(s)	400, 434
MhlI	GDGCHC	5 cut(s)	91, 97, 234, 340, 370
MluCI	AATT	1 cut(s)	344
MnlI	CCTC	9 cut(s)	164, 246, 273, 301, 359, 422, 505, 540, 559
Mph1103I	ATGCAT	1 cut(s)	262
MroI	TCCGGA	1 cut(s)	562
MseI	TTAA	1 cut(s)	318
MspI	CCGG	3 cut(s)	201, 205, 563
MspR9I	CCNGG	2 cut(s)	42, 147
MvaI	CCWGG	2 cut(s)	42, 147
MwoI	GCNNNNNNNGC	1 cut(s)	121
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	4 cut(s)	221, 385, 400, 434
NlaIII	CATG	6 cut(s)	16, 76, 123, 264, 314, 410
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	1 cut(s)	410
PciI	ACATGT	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	191, 418
Pfl23II	CGTACG	1 cut(s)	533
PkrI	GCNGC	1 cut(s)	126
PscI	ACATGT	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	40, 145
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	2 cut(s)	40, 145
PspLI	CGTACG	1 cut(s)	533
PsuI	RGATCY	2 cut(s)	400, 434
RsaI	GTAC	1 cut(s)	535
RsaNI	GTAC	1 cut(s)	534
SacI	GAGCTC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	4 cut(s)	221, 385, 400, 434
ScrFI	CCNGG	2 cut(s)	42, 147
SduI	GDGCHC	5 cut(s)	91, 97, 234, 340, 370
SetI	ASST	6 cut(s)	34, 43, 148, 325, 340, 433
SfaNI	GCATC	1 cut(s)	247
SgrDI	CGTCGACG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	1 cut(s)	344
SsiI	CCGC	1 cut(s)	554
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	40, 145
StyI	CCWWGG	1 cut(s)	310
TaaI	ACNGT	2 cut(s)	236, 538
TaqI	TCGA	2 cut(s)	100, 388
TasI	AATT	1 cut(s)	344
TfiI	GAWTC	2 cut(s)	191, 418
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	2 cut(s)	91, 246
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	323
TspRI	CASTG	2 cut(s)	91, 246
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.