Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0010359

Physical Location & Seq

Genomic Coordinates Reverse (-)

9252116 .. 9253393

Gene Structure 1278 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g13630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGTATTGCAACATGGTTCAACTGAAAGGAGCTGAGCCACCTGGATTTTCATTCCAGATAGTAAATACAAACATGGATGAGTTCAGTCCTCGTGCCCGTCGACGAAGTGCTTTGCTCACATGGCAGCACATAGCATCCTTGCCACCTGGCTTGCCAGTTGTATATTGTGGAGGTTTCAACACACAAAAGGAATCAACTACCGGCCGGTTTCTTTTGGGGAGATCAAGAGAGCATGGTGCAGTGGGGGATATGAGGGATGCATGGCCTAATGCCCGTGTGAGGAAAAATGTCTCTCTTATTCGCACTTTTCATGGATTTAAAGGTGACAAACAAGGAGCTCTTGAATTCCTCAAGTTGGTTTTCAGAGCGCTCTGCCTTTGCTGGGATCGCCAAACACAGGATCTACATGTAGATTGGATTCTTTTTAGAGGTCGATCTCTTATTCCTGTTTTATGTGAAGTGGTGAGTGATAACATTGATGGATATTACCCATCCTCGCACTATCCCATATTTGCCGAGTTTATGCTTCCTCGCACGGTGAGAATGATTGACCCACCCGCTCCCGAGGGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

192

Amino Acids

21.75

Weight (kDa)

9.1

Isoelectric Point (pI)

43.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30900 AT4G30900 AT4G30900
fragaria_vesca	FvH4_1g00920
malus_domestica	MD02G1007400.v1.1 MD15G1144700.v1.1
prunus_persica	Prupe.7G263000_v2.0.a1
pyrus_communis	pycom02g00640 pycom15g13630
rosa_chinensis	RchiOBHm_Chr2g0085611
rosa_laevigata	RLG00000015706
rosa_multiflora	Rmu_co8451807.1_g000001 Rmu_sc0006261.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155180
rosa_rugosa	Rorug01G0461500 Rorug01G0461600
rosa_samantha	Rh2AG010900 Rh2BG011400 Rh2CG012200 Rh2DG013300
rosa_wichuraiana	Rw2G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	560
AccI	GTMKAC	1 cut(s)	100
AciI	CCGC	1 cut(s)	558
AclWI	GGATC	2 cut(s)	393, 408
AcoI	YGGCCR	1 cut(s)	202
AcsI	RAATTY	1 cut(s)	344
AfeI	AGCGCT	1 cut(s)	369
AfiI	CCNNNNNNNGG	4 cut(s)	279, 355, 382, 397
AflIII	ACRYGT	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	20, 178, 344
AjnI	CCWGG	2 cut(s)	40, 145
AluBI	AGCT	2 cut(s)	32, 338
AluI	AGCT	2 cut(s)	32, 338
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	393, 408
Ama87I	CYCGRG	1 cut(s)	563
Aor51HI	AGCGCT	1 cut(s)	369
AoxI	GGCC	2 cut(s)	202, 263
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	1 cut(s)	344
AspLEI	GCGC	1 cut(s)	370
AsuHPI	GGTGA	3 cut(s)	335, 475, 550
AvaI	CYCGRG	1 cut(s)	563
BaeGI	GKGCMC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	340
BauI	CACGAG	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	136
BccI	CCATC	2 cut(s)	473, 499
BciT130I	CCWGG	2 cut(s)	42, 147
BcoDI	GTCTC	1 cut(s)	295
BfoI	RGCGCY	1 cut(s)	371
BisI	GCNGC	1 cut(s)	125
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	42, 147
BmeT110I	CYCGRG	1 cut(s)	563
BmrFI	CCNGG	2 cut(s)	42, 147
BmsI	GCATC	2 cut(s)	143, 247
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuEI	CTTGAG	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	564
Bsc4I	CCNNNNNNNGG	4 cut(s)	279, 355, 382, 397
Bse118I	RCCGGY	2 cut(s)	200, 204
Bse1I	ACTGG	1 cut(s)	155
BseBI	CCWGG	2 cut(s)	42, 147
BseDI	CCNNGG	1 cut(s)	564
BseGI	GGATG	4 cut(s)	82, 134, 262, 491
BseLI	CCNNNNNNNGG	4 cut(s)	279, 355, 382, 397
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	97
BseX3I	CGGCCG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	136
BseYI	CCCAGC	1 cut(s)	381
BsgI	GTGCAG	1 cut(s)	258
Bsh1285I	CGRYCG	1 cut(s)	205
BshFI	GGCC	2 cut(s)	204, 265
BsiEI	CGRYCG	1 cut(s)	205
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	563
BsiSI	CCGG	2 cut(s)	201, 205
BslI	CCNNNNNNNGG	4 cut(s)	279, 355, 382, 397
BsmAI	GTCTC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	204, 265
BsoBI	CYCGRG	1 cut(s)	563
Bsp1286I	GDGCHC	2 cut(s)	97, 340
Bsp143I	GATC	4 cut(s)	221, 385, 400, 434
Bsp1720I	GCTNAGC	1 cut(s)	33
BspACI	CCGC	1 cut(s)	558
BspANI	GGCC	2 cut(s)	204, 265
BspCNI	CTCAG	1 cut(s)	25
BspPI	GGATC	2 cut(s)	393, 408
BsrBI	CCGCTC	1 cut(s)	560
BsrFI	RCCGGY	2 cut(s)	200, 204
BsrI	ACTGG	1 cut(s)	155
BssAI	RCCGGY	2 cut(s)	200, 204
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	4 cut(s)	221, 385, 400, 434
BssSI	CACGAG	1 cut(s)	90
Bst2BI	CACGAG	1 cut(s)	90
Bst2UI	CCWGG	2 cut(s)	42, 147
Bst4CI	ACNGT	1 cut(s)	538
BstC8I	GCNNGC	1 cut(s)	152
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	4 cut(s)	82, 134, 262, 491
BstH2I	RGCGCY	1 cut(s)	371
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	4 cut(s)	224, 388, 403, 437
BstMAI	GTCTC	1 cut(s)	295
BstMBI	GATC	4 cut(s)	221, 385, 400, 434
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 387
BstNI	CCWGG	2 cut(s)	42, 147
BstNSI	RCATGY	1 cut(s)	410
BstSCI	CCNGG	2 cut(s)	40, 145
BstSLI	GKGCMC	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BstZI	CGGCCG	1 cut(s)	202
BsuRI	GGCC	2 cut(s)	204, 265
BtsCI	GGATG	4 cut(s)	82, 134, 262, 491
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	246
Cac8I	GCNNGC	1 cut(s)	152
CfoI	GCGC	1 cut(s)	370
Cfr10I	RCCGGY	2 cut(s)	200, 204
CspCI	CAANNNNNGTGG	2 cut(s)	132, 167
CviAII	CATG	7 cut(s)	13, 73, 120, 233, 261, 311, 407
CviJI	RGCY	6 cut(s)	32, 37, 150, 204, 265, 338
CviKI_1	RGCY	6 cut(s)	32, 37, 150, 204, 265, 338
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	4 cut(s)	223, 387, 402, 436
DpnII	GATC	4 cut(s)	221, 385, 400, 434
DraI	TTTAAA	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	202
EagI	CGGCCG	1 cut(s)	202
Ecl136II	GAGCTC	1 cut(s)	338
EclXI	CGGCCG	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	340
Eco47III	AGCGCT	1 cut(s)	369
Eco52I	CGGCCG	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	563
EcoICRI	GAGCTC	1 cut(s)	338
EcoRI	GAATTC	1 cut(s)	344
EcoRII	CCWGG	2 cut(s)	40, 145
EcoT22I	ATGCAT	1 cut(s)	262
EcoT38I	GRGCYC	1 cut(s)	340
FaeI	CATG	7 cut(s)	16, 76, 123, 236, 264, 314, 410
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	7 cut(s)	12, 72, 119, 232, 260, 310, 406
FauI	CCCGC	1 cut(s)	565
FblI	GTMKAC	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	125
FokI	GGATG	4 cut(s)	89, 121, 269, 478
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	1 cut(s)	125
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	125
GsaI	CCCAGC	1 cut(s)	385
HaeII	RGCGCY	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	204, 265
HapII	CCGG	2 cut(s)	201, 205
HhaI	GCGC	1 cut(s)	370
Hin1II	CATG	7 cut(s)	16, 76, 123, 236, 264, 314, 410
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	101
HindII	GTYRAC	1 cut(s)	101
HinfI	GANTC	2 cut(s)	191, 418
HpaII	CCGG	2 cut(s)	201, 205
HphI	GGTGA	3 cut(s)	335, 475, 550
Hpy166II	GTNNAC	1 cut(s)	101
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	4 cut(s)	55, 225, 341, 563
Hpy8I	GTNNAC	1 cut(s)	101
Hpy99I	CGWCG	2 cut(s)	102, 105
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4V	TGCA	3 cut(s)	9, 239, 260
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 387
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	7 cut(s)	16, 76, 123, 236, 264, 314, 410
HspAI	GCGC	1 cut(s)	368
Kzo9I	GATC	4 cut(s)	221, 385, 400, 434
LmnI	GCTCC	3 cut(s)	29, 335, 565
Lsp1109I	GCAGC	1 cut(s)	136
LweI	GCATC	2 cut(s)	143, 247
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	4 cut(s)	223, 387, 402, 436
MbiI	CCGCTC	1 cut(s)	560
MboI	GATC	4 cut(s)	221, 385, 400, 434
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	97, 340
MluCI	AATT	2 cut(s)	344, 571
MnlI	CCTC	9 cut(s)	99, 164, 246, 273, 359, 422, 505, 540, 559
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	318
MspI	CCGG	2 cut(s)	201, 205
MspR9I	CCNGG	2 cut(s)	42, 147
MvaI	CCWGG	2 cut(s)	42, 147
MwoI	GCNNNNNNNGC	2 cut(s)	121, 387
NdeII	GATC	4 cut(s)	221, 385, 400, 434
NlaIII	CATG	7 cut(s)	16, 76, 123, 236, 264, 314, 410
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	1 cut(s)	323
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	1 cut(s)	410
PciI	ACATGT	1 cut(s)	406
PcsI	WCGNNNNNNNCGW	1 cut(s)	97
PfeI	GAWTC	2 cut(s)	191, 418
PkrI	GCNGC	1 cut(s)	126
PscI	ACATGT	1 cut(s)	406
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	40, 145
PspFI	CCCAGC	1 cut(s)	381
PspGI	CCWGG	2 cut(s)	40, 145
PsuI	RGATCY	1 cut(s)	400
SacI	GAGCTC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	318
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	4 cut(s)	221, 385, 400, 434
ScrFI	CCNGG	2 cut(s)	42, 147
SduI	GDGCHC	2 cut(s)	97, 340
SetI	ASST	7 cut(s)	34, 43, 148, 175, 325, 340, 433
SfaNI	GCATC	2 cut(s)	143, 247
SgrDI	CGTCGACG	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	350
SmoI	CTYRAG	1 cut(s)	350
Sse9I	AATT	2 cut(s)	344, 571
SsiI	CCGC	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	40, 145
TaaI	ACNGT	1 cut(s)	538
TaqI	TCGA	2 cut(s)	100, 433
TasI	AATT	2 cut(s)	344, 571
TfiI	GAWTC	2 cut(s)	191, 418
Tru1I	TTAA	1 cut(s)	318
Tru9I	TTAA	1 cut(s)	318
TscAI	CASTG	1 cut(s)	246
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	124
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	39, 299
TspRI	CASTG	1 cut(s)	246
XapI	RAATTY	1 cut(s)	344
XceI	RCATGY	1 cut(s)	410
XmiI	GTMKAC	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.