Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010359

Physical Location & Seq

Genomic Coordinates Reverse (-)

969693 .. 970814

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46116

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGATGAGTTCAGTCCTCGTGCACGGAGGCGAAGTGCTTTGCTTACATGGCAGCACATTGCATCCTTACCACCTAACTTGCCAGTTGTTTATTGTGGAGGGTTCAACACACAAAAGGAATCAACTACTGGTCGTTTTCTTCTTGGGAGATCAAGAGAGCATGGTGTGGTCGGTGATATGAGGGATACATGGCCTAATGCCCGTGTGAGGAAAAATGCTTCTCTAATTCGCACTTTTCATGGATTTAAAGGTAACAAACAAGGAGCTCTTGAATTCTTCAAGTTGGTTTTCAGAGCCCTGTGCCTTTGCTGGGATCGCCAAACACAGGATCTACACATAGATTGGATTCTTTTCAGAGGTAGATCTCTTGTTCCTGTTTCGTGTGAAGTGGTGAGTGATAACATTGATGGACAATATCCATCCTCCCACTATCCAATATTTGCTGAGTTTCTGCTTCCTCGTGCTGTGAGAATTGTTGACCCACCTGCTCAAGAGGAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

167

Amino Acids

19.16

Weight (kDa)

9.3

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010359)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G30900 AT4G30900 AT4G30900
fragaria_vesca	FvH4_1g00920
malus_domestica	MD02G1007400.v1.1 MD15G1144700.v1.1
prunus_persica	Prupe.7G263000_v2.0.a1
pyrus_communis	pycom02g00640 pycom15g13630
rosa_chinensis	RchiOBHm_Chr2g0085611
rosa_laevigata	RLG00000015706
rosa_multiflora	Rmu_co8451807.1_g000001 Rmu_sc0006261.1_g000001
rosa_roxburghii	Rroxscaffold_2G00155180
rosa_rugosa	Rorug01G0461500 Rorug01G0461600
rosa_samantha	Rh2AG010900 Rh2BG011400 Rh2CG012200 Rh2DG013300
rosa_wichuraiana	Rw2G000970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	1 cut(s)	493
AclWI	GGATC	2 cut(s)	321, 336
AcsI	RAATTY	1 cut(s)	272
AfiI	CCNNNNNNNGG	3 cut(s)	207, 310, 325
AgsI	TTSAA	3 cut(s)	106, 272, 280
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
Alw21I	GWGCWC	2 cut(s)	25, 268
Alw44I	GTGCAC	1 cut(s)	21
AlwI	GGATC	2 cut(s)	321, 336
AoxI	GGCC	1 cut(s)	191
ApaLI	GTGCAC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	52
ApoI	RAATTY	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	185, 403
BaeGI	GKGCMC	1 cut(s)	25
BanII	GRGCYC	2 cut(s)	268, 298
BauI	CACGAG	2 cut(s)	18, 459
Bbv12I	GWGCWC	2 cut(s)	25, 268
BbvI	GCAGC	1 cut(s)	64
BccI	CCATC	2 cut(s)	401, 427
BciVI	GTATCC	1 cut(s)	178
BfuAI	ACCTGC	1 cut(s)	493
BfuI	GTATCC	1 cut(s)	178
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	1 cut(s)	53
BlsI	GCNGC	1 cut(s)	54
BmsI	GCATC	1 cut(s)	71
BpuEI	CTTGAG	1 cut(s)	474
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	3 cut(s)	207, 310, 325
Bse1I	ACTGG	2 cut(s)	83, 133
Bse3DI	GCAATG	1 cut(s)	57
BseGI	GGATG	3 cut(s)	10, 62, 419
BseLI	CCNNNNNNNGG	3 cut(s)	207, 310, 325
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	2 cut(s)	83, 133
BseSI	GKGCMC	1 cut(s)	25
BseXI	GCAGC	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	309
BshFI	GGCC	1 cut(s)	193
BsiHKAI	GWGCWC	2 cut(s)	25, 268
BslI	CCNNNNNNNGG	3 cut(s)	207, 310, 325
BsnI	GGCC	1 cut(s)	193
Bsp1286I	GDGCHC	3 cut(s)	25, 268, 298
Bsp143I	GATC	4 cut(s)	149, 313, 328, 362
BspANI	GGCC	1 cut(s)	193
BspCNI	CTCAG	1 cut(s)	436
BspMI	ACCTGC	1 cut(s)	493
BspPI	GGATC	2 cut(s)	321, 336
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	2 cut(s)	83, 133
BssMI	GATC	4 cut(s)	149, 313, 328, 362
BssSI	CACGAG	2 cut(s)	18, 459
Bst2BI	CACGAG	2 cut(s)	18, 459
BstDEI	CTNAG	1 cut(s)	444
BstF5I	GGATG	3 cut(s)	10, 62, 419
BstKTI	GATC	4 cut(s)	152, 316, 331, 365
BstMBI	GATC	4 cut(s)	149, 313, 328, 362
BstMWI	GCNNNNNNNGC	2 cut(s)	49, 315
BstSLI	GKGCMC	1 cut(s)	25
BstV1I	GCAGC	1 cut(s)	64
BstX2I	RGATCY	2 cut(s)	328, 362
BstYI	RGATCY	2 cut(s)	328, 362
BsuI	GTATCC	1 cut(s)	178
BsuRI	GGCC	1 cut(s)	193
BtsCI	GGATG	3 cut(s)	10, 62, 419
BveI	ACCTGC	1 cut(s)	493
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviAII	CATG	4 cut(s)	48, 161, 189, 239
CviJI	RGCY	3 cut(s)	193, 266, 296
CviKI_1	RGCY	3 cut(s)	193, 266, 296
DdeI	CTNAG	1 cut(s)	444
DpnI	GATC	4 cut(s)	151, 315, 330, 364
DpnII	GATC	4 cut(s)	149, 313, 328, 362
DraI	TTTAAA	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	266
Eco24I	GRGCYC	2 cut(s)	268, 298
Eco53kI	GAGCTC	1 cut(s)	266
EcoICRI	GAGCTC	1 cut(s)	266
EcoRI	GAATTC	1 cut(s)	272
EcoT38I	GRGCYC	2 cut(s)	268, 298
FaeI	CATG	4 cut(s)	51, 164, 192, 242
FaiI	YATR	6 cut(s)	49, 162, 179, 190, 240, 338
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	4 cut(s)	47, 160, 188, 238
Fnu4HI	GCNGC	1 cut(s)	53
FokI	GGATG	3 cut(s)	17, 49, 406
FriOI	GRGCYC	2 cut(s)	268, 298
Fsp4HI	GCNGC	1 cut(s)	53
GluI	GCNGC	1 cut(s)	53
GsaI	CCCAGC	1 cut(s)	313
HaeIII	GGCC	1 cut(s)	193
Hin1II	CATG	4 cut(s)	51, 164, 192, 242
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HinfI	GANTC	2 cut(s)	119, 346
HphI	GGTGA	2 cut(s)	185, 403
Hpy166II	GTNNAC	2 cut(s)	23, 478
Hpy188I	TCNGA	2 cut(s)	293, 356
Hpy188III	TCNNGA	3 cut(s)	153, 269, 491
Hpy8I	GTNNAC	2 cut(s)	23, 478
HpyCH4V	TGCA	2 cut(s)	23, 62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	49, 315
HpyF3I	CTNAG	1 cut(s)	444
Hsp92II	CATG	4 cut(s)	51, 164, 192, 242
Kzo9I	GATC	4 cut(s)	149, 313, 328, 362
LmnI	GCTCC	1 cut(s)	263
LpnPI	CCDG	7 cut(s)	96, 114, 295, 311, 311, 387, 498
Lsp1109I	GCAGC	1 cut(s)	64
LweI	GCATC	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	4 cut(s)	151, 315, 330, 364
MboI	GATC	4 cut(s)	149, 313, 328, 362
MboII	GAAGA	2 cut(s)	131, 268
MflI	RGATCY	2 cut(s)	328, 362
MhlI	GDGCHC	3 cut(s)	25, 268, 298
MluCI	AATT	4 cut(s)	225, 272, 471, 499
MnlI	CCTC	9 cut(s)	21, 27, 92, 174, 201, 350, 433, 468, 487
MseI	TTAA	1 cut(s)	246
MwoI	GCNNNNNNNGC	2 cut(s)	49, 315
NdeII	GATC	4 cut(s)	149, 313, 328, 362
NlaIII	CATG	4 cut(s)	51, 164, 192, 242
PaqCI	CACCTGC	1 cut(s)	493
PfeI	GAWTC	2 cut(s)	119, 346
PkrI	GCNGC	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	309
PsuI	RGATCY	2 cut(s)	328, 362
SacI	GAGCTC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	53
Sau3AI	GATC	4 cut(s)	149, 313, 328, 362
SduI	GDGCHC	3 cut(s)	25, 268, 298
SetI	ASST	5 cut(s)	76, 253, 268, 361, 487
SfaNI	GCATC	1 cut(s)	71
SmlI	CTYRAG	1 cut(s)	489
SmoI	CTYRAG	1 cut(s)	489
Sse9I	AATT	4 cut(s)	225, 272, 471, 499
SspI	AATATT	1 cut(s)	438
SstI	GAGCTC	1 cut(s)	268
TasI	AATT	4 cut(s)	225, 272, 471, 499
TfiI	GAWTC	2 cut(s)	119, 346
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TseI	GCWGC	1 cut(s)	52
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	40
VneI	GTGCAC	1 cut(s)	21
XapI	RAATTY	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.